View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4889-Insertion-1 (Length: 1003)

Name: NF4889-Insertion-1
Description: NF4889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4889-Insertion-1
NF4889-Insertion-1
[»] chr4 (1 HSPs)
chr4 (8-995)||(39918257-39919246)
[»] chr5 (1 HSPs)
chr5 (658-727)||(5545448-5545517)


Alignment Details
Target: chr4 (Bit Score: 915; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 915; E-Value: 0
Query Start/End: Original strand, 8 - 995
Target Start/End: Complemental strand, 39919246 - 39918257
Alignment:
Q  8 ccaatcaccaacagaaccatcactataatcttctccgaatctcttaatacaccacaaatcttcttcacaagacaaaaccttccaatgaggaatagcaaaa 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39919246 ccaatcaccaacagaaccatcactataatcttctcctaatctcttaatacaccacaaatcttcttcacaagacaaaaccttccaatgaggaatagcaaaa 39919147  T
Q  108 cgtaacggttcacagctagaaacttcagttgccacagcactacacccattttccattgcaagattatgagcaaaaccacacaaagctttcaccatcttca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39919146 cgtaacggttcacagctagaaacttcagttgccacagcactacacccattttccattgcaagattatgagcaaaaccacacaaagctttcaccatcttca 39919047  T
Q  208 acacttctgctccttccccaccaattccatacattagatgaaacccaaacggtttgaaaaaattcggaatcgaaggtaattttaaccaaggtaaagcctt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39919046 acacttctgctccttccccaccaattccatacattagatgaaacccaaacggtttgaaaaaattcggaatcgaaggtaattttaaccaaggtaaagcctt 39918947  T
Q  308 gtctatcagtcgagttgtttttgctaacacacgtctcaggcgcgatgcgccttttacttcaagggtaaacacgtctttgcagttccaaacacttactaaa 407  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39918946 gtctatcagtcgagttgtttttgctaacacacgtctcacgcgcgatgcgccttttacttcaagggtaaacacgtctttgcagttccaaacacttactaaa 39918847  T
Q  408 gcccacgaactcggtgggtccattaaagagctttcggagccggaccaattatatgatccggccccatattttccgtctcttggaacggctaagaaggttc 507  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  39918846 gcccacgaactcggtgggtccattaaaaagctttcggagccggaccagttatctgatccggccccatattttccgtctcttggaatggctaagaaggttc 39918747  T
Q  508 cgagggtgagtttgtttttcaaaacagaatcaatgtcacgaggaaaaaactcagtggtggagaatttgtaacggtaaagtgtttcagcgtcgtttggtgt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39918746 cgagggtgagtttgtttttcaaaacagaatcaatgtcacgaggaaaaaactcagtggtggagaatttgtaacggtaaagtgtttcagcgtcgtttggtgt 39918647  T
Q  608 gagtttaaggattgttgttttggacgatgatgttttgagacggtgtttgaaaacggggttaacaaggattgacggtgtacggaactttgagtaaccgcat 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39918646 gagtttaaggattgttgttttggacgatgatgttttgagacggtgtttgaaaacggggttaacaaggattgacggtgtacggaactttgagtaaccgcat 39918547  T
Q  708 ttgtcggtgaaaagtttaactgatgcaacgttgtcgttttcagtagccatgtaagaatactcagcaccattttcacgaaaccattgttccattttctcta 807  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39918546 ttgtcggtgaaaagtttaactgatgcaacgttatcgttttcagtagccatgtaagaatactcagcaccattttcacgaaaccattgttccattttctcta 39918447  T
Q  808 ccagttttagccctattcccattcttctatgatttggagaaactcttaagcct-aaacgtaggctagttttgtgaaaacagggacatgattggaattttg 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39918446 ccagttttagccctattcccattcttctatgatttggagaaactcttaagcctaaaacgtaggctagttttgtgaaaacagggacatgattggaattttg 39918347  T
Q  907 atttgtttctgtgctgttttttgttggtcttgtgaagtttttggccgcatgtaacgg-tttgata-acactcgtatcattcggactgtctc 995  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |  |||||||||||| |||||||||    
T  39918346 atttgtttctgtgctgttttttgttggtcttgtg-agttttttgccgcatgtaacggttttgatacaacctcgtatcattccgactgtctc 39918257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 658 - 727
Target Start/End: Original strand, 5545448 - 5545517
Alignment:
Q  658 aaacggggttaacaaggattgacggtgtacggaactttgagtaaccgcatttgtcggtgaaaagtttaac 727  Q
    |||||||||| || || ||||||||||||||||||||||  ||||||||||| || ||||| ||||||||    
T  5545448 aaacggggttgacgagaattgacggtgtacggaactttgtataaccgcatttttcagtgaagagtttaac 5545517  T

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