View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4889-Insertion-3 (Length: 797)
Name: NF4889-Insertion-3
Description: NF4889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4889-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 7 - 797
Target Start/End: Complemental strand, 38175389 - 38174597
Alignment:
| Q |
7 |
acaaaatgcatataaaaagtaagataaatattgaatgaaaaagggataagatggcaaaatttgtt--gtgtttgattgatgtgtgtcatttactttatac |
104 |
Q |
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| T |
38175389 |
acaaaatgcatataaaaagtaagataaatattgaatgaaaaagggataagatagcaaaatttgttttgtgtttgattgatgtgt--catttactttatac |
38175292 |
T |
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| Q |
105 |
ataatatgtatttatatgcaaaactatttctactctcctaaacgacatggccctacaacttatcatccttttctcattattaactccaagtatgtaatct |
204 |
Q |
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| T |
38175291 |
ataatatgtatttatatgcaaaactatttctactctcctaaacgacatggccctacaacttatcattcttttctcattattaactccaagtatgtaatct |
38175192 |
T |
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| Q |
205 |
taagacctcttgcttcttttgaaacacaaatatgatctaagctaacccaacaaatcttatttacctctatcccacccacctcccccacaaaaattatctt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38175191 |
taagacctcttgcttcttttgaaacacaaatatgatctaagctaacccaacaaatcttatttacctctatcccacccacctcccccacaaaaattatctt |
38175092 |
T |
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| Q |
305 |
tgaatagatatcatcttacttataaccttttaggggctatgtatagaatgaaaagaa----aacaaagaaaatatatagtgagagaattgattgaactta |
400 |
Q |
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| T |
38175091 |
taaatagatatcatcttagttataaccttttaggggctttgtatagaatgaaaagaaaaacaaaaaaaaaaaaatatagtgagagaattgattgaattta |
38174992 |
T |
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| Q |
401 |
attcatcaatact---ccaccaatatatacttcatttgattacatttatnnnnnnnnnnnnnnnnnnnnaaagtagtttttaagtttattgaataagtaa |
497 |
Q |
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| T |
38174991 |
attcatcaatactccaccaccaatatatatttcatctggttacatttat-----aagtaaaaaaaaaaaaatatagtttttaagtttattgaataagtaa |
38174897 |
T |
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| Q |
498 |
tgtaattgaactataaatatgattatatgcattaattatttaatgaagctataaaattgtgtttgatgtgacatgaaggagtacaaatgtttacctttcc |
597 |
Q |
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| T |
38174896 |
tgtaatcgaactataaatatgattatatacattaattatttaatgaagctacaaaattgtgtttgatgtgacatgaaggagtacaaatgtttacctttcc |
38174797 |
T |
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| Q |
598 |
gattagctaatttgttcatcatcgaatcaataacaagtttccatgtttcgtatttcacatgacaaaaatgaagatgcagctgccacatattcatcaggtt |
697 |
Q |
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| T |
38174796 |
tattagctaatttgttcatcatcgaatcaataaaaagtttccatatttcgtatttcacatgacaaaaatgaagatgcagctgccacatattcatcaggtt |
38174697 |
T |
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| Q |
698 |
gattaaatgcaaaaatgcgctactctgatgaaaattcagtcagatttctataacactcagctgccacaattttggttgagatgagtatttctacctttcc |
797 |
Q |
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| T |
38174696 |
gattaaatgcaaaaatgcgctactctgatgaaaattcagtcagatttctataacactcagctgccacaattttggttaagatgagtatttctacctttcc |
38174597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 474 - 544
Target Start/End: Complemental strand, 31836520 - 31836450
Alignment:
| Q |
474 |
tttttaagtttattgaataagtaatgtaattgaactataaatatgattatatgcattaattatttaatgaa |
544 |
Q |
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| T |
31836520 |
tttttaggttcattgaataattaatgtatttggtctataaatatgactaaatacattaattattcaatgaa |
31836450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 541
Target Start/End: Complemental strand, 38133491 - 38133432
Alignment:
| Q |
482 |
tttattgaataagtaatgtaattgaactataaatatgattatatgcattaattatttaat |
541 |
Q |
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| T |
38133491 |
tttattgaataattaatatatttgacctataaatatgatcagatacattaattatttaat |
38133432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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