View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4889-Insertion-5 (Length: 512)

Name: NF4889-Insertion-5
Description: NF4889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4889-Insertion-5
NF4889-Insertion-5
[»] chr4 (3 HSPs)
chr4 (8-512)||(34621696-34622197)
chr4 (250-312)||(49219128-49219190)
chr4 (343-380)||(41162203-41162240)
[»] chr1 (3 HSPs)
chr1 (250-312)||(12564893-12564955)
chr1 (352-387)||(6933118-6933153)
chr1 (230-293)||(47020515-47020579)
[»] chr5 (4 HSPs)
chr5 (228-312)||(21768193-21768278)
chr5 (343-382)||(14257346-14257385)
chr5 (345-383)||(30845201-30845239)
chr5 (342-382)||(11095603-11095643)
[»] chr8 (2 HSPs)
chr8 (352-387)||(31167861-31167896)
chr8 (344-389)||(7026605-7026650)
[»] chr7 (3 HSPs)
chr7 (352-387)||(31691271-31691306)
chr7 (250-312)||(10190784-10190846)
chr7 (250-310)||(44151499-44151559)
[»] chr2 (1 HSPs)
chr2 (352-387)||(6772696-6772731)
[»] chr6 (4 HSPs)
chr6 (341-382)||(30865355-30865396)
chr6 (276-312)||(2112189-2112225)
chr6 (228-311)||(3168257-3168341)
chr6 (260-312)||(28660789-28660841)
[»] scaffold0024 (1 HSPs)
scaffold0024 (276-312)||(27565-27601)
[»] chr3 (3 HSPs)
chr3 (343-387)||(2201000-2201044)
chr3 (352-384)||(4534500-4534532)
chr3 (256-312)||(47904088-47904144)


Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 512
Target Start/End: Complemental strand, 34622197 - 34621696
Alignment:
Q  8 aagattcgccactggcttcaaccctttgcaactcaagccgttggattctattgtagatattgagaggctcaagaatcgggatcctgaaaatatcacttcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34622197 aagattcgccactggcttcaaccctttgcaactcaagccgttggattctattgtagatattgagaggctcaaggatcgggatcctgaaaatatcacttcc 34622098  T
Q  108 atttgggatgatgtaatgtcttatttgtctaatttcaatcattcgttctttattctttttctctttggtaaatgtttacaaatgttgataggagtctatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||         || ||| ||||||||||||||||||||| ||| |||||||||||    
T  34622097 atttgggatgatgtaatgtcttatttgtctaatttcaatcattcgtt---------ttctct-tttggtaaatgtttacaaatgctgacaggagtctatg 34622008  T
Q  208 actt-------------tatttgagtttgtttacttatgacatgtccatggactgtttcaacttatttccgtaagctcgtaaagataggttatgaaaaca 294  Q
    ||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34622007 acttgtttggattgatttatttgagtttgtttacttatgacatgtccatggactgtttcaacttatttccgtaagctcgtaaagatacgttatgaaaaca 34621908  T
Q  295 atttatagtttatatgaatgtagcttatagcttttgttgtagaaataacttatgttgtaagtgcttagttaagttgtttatccaaacagagtcgtgttgg 394  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  34621907 atttatagtttatatgactgtagcttatagcttttgttgtagaaataacttatgttgtaagtgtttagttaagttgtttatccaaacagagtcatgttgg 34621808  T
Q  395 agataaaagatactcacagtttt-tacatcattggatataaatataaaatgtacacaattttcacaccatagtgaatagtgaattttaacatgagaggtg 493  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  34621807 agataaaagatactcacagttttatacatcattggatataaatataaaatgtacacaattttcacacc-------atagtgaattttaacatgagaggtg 34621715  T
Q  494 tggatcctggttggaagag 512  Q
    |||||||||||||||||||    
T  34621714 tggatcctggttggaagag 34621696  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 49219190 - 49219128
Alignment:
Q  250 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 312  Q
    ||||| ||||||||| ||| ||| | ||||||| |||||||||||| |||||| |||||||||    
T  49219190 tttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaa 49219128  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Original strand, 41162203 - 41162240
Alignment:
Q  343 cttatgttgtaagtgcttagttaagttgtttatccaaa 380  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  41162203 cttatgttataagtgcttaattaagttgtttatccaaa 41162240  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 12564893 - 12564955
Alignment:
Q  250 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 312  Q
    ||||| ||||||||||||||| |  |||||||| |||||||||||| |||||| |||||||||    
T  12564893 tttcagcttatttccgtaagcactaaaagatagcttatgaaaacaacttatagcttatatgaa 12564955  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Original strand, 6933118 - 6933153
Alignment:
Q  352 taagtgcttagttaagttgtttatccaaacagagtc 387  Q
    |||||||||| |||||||||||||||||||||||||    
T  6933118 taagtgcttaattaagttgtttatccaaacagagtc 6933153  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 47020579 - 47020515
Alignment:
Q  230 tatgacatgtccatggactgttt-caacttatttccgtaagctcgtaaagataggttatgaaaac 293  Q
    ||||||||||||||   |||||| ||||||||||||||||||||   ||||||| ||||||||||    
T  47020579 tatgacatgtccataacctgtttacaacttatttccgtaagctctctaagatagcttatgaaaac 47020515  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 21768193 - 21768278
Alignment:
Q  228 cttatgacatgtccatggactgttt-caacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 312  Q
    ||||||||||||||||   |||||| |||||||||| ||||||||| | ||||||  |||||||||||  ||| ||||||||||||    
T  21768193 cttatgacatgtccatacgctgttttcaacttattttcgtaagctcttcaagataacttatgaaaacagcttaaagtttatatgaa 21768278  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 382
Target Start/End: Complemental strand, 14257385 - 14257346
Alignment:
Q  343 cttatgttgtaagtgcttagttaagttgtttatccaaaca 382  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  14257385 cttatgttataagtgcttaattaagttgtttatccaaaca 14257346  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 30845239 - 30845201
Alignment:
Q  345 tatgttgtaagtgcttagttaagttgtttatccaaacag 383  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  30845239 tatgttataagtgcttaattaagttgtttatccaaacag 30845201  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 11095603 - 11095643
Alignment:
Q  342 acttatgttgtaagtgcttagttaagttgtttatccaaaca 382  Q
    |||||| | ||||||| ||||||||||||||||||||||||    
T  11095603 acttatatggtaagtgtttagttaagttgtttatccaaaca 11095643  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Complemental strand, 31167896 - 31167861
Alignment:
Q  352 taagtgcttagttaagttgtttatccaaacagagtc 387  Q
    |||||||||| |||||||||||||||||||||||||    
T  31167896 taagtgcttaattaagttgtttatccaaacagagtc 31167861  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 7026650 - 7026605
Alignment:
Q  344 ttatgttgtaagtgcttagttaagttgtttatccaaacagagtcgt 389  Q
    ||||| ||||| |||||| ||||||||||||||||||||| |||||    
T  7026650 ttatgctgtaaatgcttaattaagttgtttatccaaacagggtcgt 7026605  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Original strand, 31691271 - 31691306
Alignment:
Q  352 taagtgcttagttaagttgtttatccaaacagagtc 387  Q
    |||||||||| |||||||||||||||||||||||||    
T  31691271 taagtgcttaattaagttgtttatccaaacagagtc 31691306  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 10190846 - 10190784
Alignment:
Q  250 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 312  Q
    ||||||| ||||||| ||||||  |||  |||| |||||||||||||||| ||||||||||||    
T  10190846 tttcaacgtatttccataagcttttaagaatagtttatgaaaacaatttacagtttatatgaa 10190784  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 44151499 - 44151559
Alignment:
Q  250 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatg 310  Q
    ||||| ||||||||| ||||||  | ||||||| |||||||||||| |||||| |||||||    
T  44151499 tttcagcttatttccataagcttttcaagatagtttatgaaaacaacttatagcttatatg 44151559  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Original strand, 6772696 - 6772731
Alignment:
Q  352 taagtgcttagttaagttgtttatccaaacagagtc 387  Q
    |||||||||| |||||||||||||||||||||||||    
T  6772696 taagtgcttaattaagttgtttatccaaacagagtc 6772731  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 30865396 - 30865355
Alignment:
Q  341 aacttatgttgtaagtgcttagttaagttgtttatccaaaca 382  Q
    |||||||||| ||| |||||| ||||||||||||||||||||    
T  30865396 aacttatgttataaatgcttaattaagttgtttatccaaaca 30865355  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 2112225 - 2112189
Alignment:
Q  276 aagataggttatgaaaacaatttatagtttatatgaa 312  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  2112225 aagatagtttatgaaaacaacttatagtttatatgaa 2112189  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 3168257 - 3168341
Alignment:
Q  228 cttatgacatgtccatggactg-tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatga 311  Q
    |||||||||||||||| | ||| ||||| ||||||||| |||||||   | ||||| ||| ||||||| ||||||| ||||||||    
T  3168257 cttatgacatgtccatcggctgttttcagcttatttccttaagctctccaggatagcttaagaaaacagtttatagcttatatga 3168341  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 28660789 - 28660841
Alignment:
Q  260 tttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 312  Q
    ||||| ||||||  ||| ||||| |||||||||||||||||| ||||||||||    
T  28660789 tttccataagcttttaaggatagtttatgaaaacaatttataatttatatgaa 28660841  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 27601 - 27565
Alignment:
Q  276 aagataggttatgaaaacaatttatagtttatatgaa 312  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  27601 aagatagtttatgaaaacaacttatagtttatatgaa 27565  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 2201044 - 2201000
Alignment:
Q  343 cttatgttgtaagtgcttagttaagttgtttatccaaacagagtc 387  Q
    |||||| | |||| ||||||||||||||||||||| |||||||||    
T  2201044 cttatgctataagcgcttagttaagttgtttatcctaacagagtc 2201000  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 4534500 - 4534532
Alignment:
Q  352 taagtgcttagttaagttgtttatccaaacaga 384  Q
    |||||||||| ||||||||||||||||||||||    
T  4534500 taagtgcttaattaagttgtttatccaaacaga 4534532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 47904088 - 47904144
Alignment:
Q  256 cttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 312  Q
    ||||||||||||||||| | | ||||| |||||||||| | |||||| |||||||||    
T  47904088 cttatttccgtaagctcttcacgatagcttatgaaaaccacttatagattatatgaa 47904144  T

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