View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4889-Insertion-6 (Length: 358)
Name: NF4889-Insertion-6
Description: NF4889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4889-Insertion-6 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 3552802 - 3553148
Alignment:
| Q |
14 |
ccccagtgttttttacccaaaaactcatttgaaga---taatttaattcaattcaccataattgcttaaatgggataa-cttattagagaaaataatgtt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3552802 |
ccccagtgttttttacccaaaaactcatttgaagaagataatttaattcaattcacca--attgcttaaatgggataaacttattagagaaaataatgtt |
3552899 |
T |
|
| Q |
110 |
acttcgtgacttccaatgtgaaactaactccaaacaaagtttttagttgagaatcaattaactccaaagnnnnnnnnnggagaataatcggaataaatta |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| || |
|
|
| T |
3552900 |
acttcgtgacttccaatgtgaaactaactccaaacaaagtttttagttgagaaccaattaactccaaagaaaaaaaaaggagaataatcgaaataaggta |
3552999 |
T |
|
| Q |
210 |
ggagatatgactcgccccgacctaaaccatcacataactttataccatactttgtggtgataagttataggtaacgaaaagacgtcgatctgactcttga |
309 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
3553000 |
ggagatatgactcgctccgacctaaaccatcacataattttataccatactttgtggtgataagtcataggtaacaaaaagacatcgatctgaatcttga |
3553099 |
T |
|
| Q |
310 |
gtcttgaccgatgctacaaaaaacacacaccaaactttcaacatctcta |
358 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3553100 |
gtcttgattgatgctacaaaaaacacacaccaaactttcaacatctcta |
3553148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University