View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4889_high_2 (Length: 440)
Name: NF4889_high_2
Description: NF4889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4889_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 47365235 - 47365656
Alignment:
| Q |
1 |
gtgtgtatttgggaggctaaagaacaagagatttccttcgattgaagcaccaccaccattaaaagaaacaagattatgtgaacctgaggctttaacagtt |
100 |
Q |
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| T |
47365235 |
gtgtgtatttgggaggctaaagaacaagagatttccttcgattgaagcaccaccaccattaaaagaaacaagattatgtgaacctgaggctttaacagtt |
47365334 |
T |
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| Q |
101 |
gctattgcctcagctgcagcagctgaagctgcttttactgctgctcaggttgcagttgaagttgttaggttccaatcggcttatcaatgtaaaggaaaac |
200 |
Q |
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| T |
47365335 |
gctattgcctcagctgcagcagctgaagctgcttttactgctgctcaggttgcagttgaagttgttaggttccaatcggcttatcaatgtaaaggaaaac |
47365434 |
T |
|
| Q |
201 |
cagaagttaagcttgttaaaactaagcataatgcttctcaatcaacacatagctgcaagttaaagattgaagaatcttcagctatcaaaattcaaacaac |
300 |
Q |
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| T |
47365435 |
cagaagttaagcttgttaaaactaagcataatgcttctcaatcaacacatagctgcaagttaaagattgaagaatcttcagctatcaaaattcaaacaac |
47365534 |
T |
|
| Q |
301 |
atttagaggctacatagtgagttttgtattcactttcacctttcatttgtatcaacttaaacccttttttcatagttttccccttctgctaaatgctcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47365535 |
atttagaggctacatagtgagttttgtattcacttttacctttcatttgtatcaacttaaacccttttttcatagttttccccttctgctaaatgctcaa |
47365634 |
T |
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| Q |
401 |
ttatttttgtgacaaacatagt |
422 |
Q |
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| T |
47365635 |
ttatttttgtgacaaacatagt |
47365656 |
T |
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