View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4889_high_6 (Length: 259)
Name: NF4889_high_6
Description: NF4889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4889_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 10231321 - 10231214
Alignment:
| Q |
16 |
aacaaccacccacaattcctatccctcaatttaacatagcattcgtcagaacccaagaaaaaccccaaacatcacaacctcatgagacactaagaaccgg |
115 |
Q |
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| T |
10231321 |
aacaaccacccacaattcctatccctcaatttaacatagcattcgtcagaacccaagaaaaaccccaaacatcacaacctcatgagacactaagaaccgg |
10231222 |
T |
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| Q |
116 |
ttcccctg |
123 |
Q |
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|||||||| |
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| T |
10231221 |
ttcccctg |
10231214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 10231151 - 10231078
Alignment:
| Q |
186 |
tcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaacc |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10231151 |
tcatcaatatcagcactaatactcaacacactcgatgacattatcaacaccttcatagacccaccaataaaacc |
10231078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 10239931 - 10239858
Alignment:
| Q |
186 |
tcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaacc |
259 |
Q |
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| T |
10239931 |
tcatcaatctcagcactaatactcaacacactcgatgacatcatcaacaccttcatagacccaccaataaaacc |
10239858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 10240104 - 10240025
Alignment:
| Q |
16 |
aacaaccacccacaattcctatccctcaatttaacatagcattcgtcagaacccaagaaaaaccccaaacatcacaacct |
95 |
Q |
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||||||||||||||| | ||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||||||||| |
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| T |
10240104 |
aacaaccacccacaacttatatccctcaatttaacacagcatccgtcagaaccaaagaaaaacctcaaacatcacaacct |
10240025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 10254684 - 10254747
Alignment:
| Q |
196 |
cagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaacc |
259 |
Q |
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|||||||| || |||||||| |||| ||||| ||||||| |||||||||||||||||||||||| |
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| T |
10254684 |
cagcactactattcaacacattcgacgacatcatcaacaccttcatagacccaccaataaaacc |
10254747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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