View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4889_low_3 (Length: 389)
Name: NF4889_low_3
Description: NF4889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4889_low_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 55382849 - 55383225
Alignment:
| Q |
13 |
tggagcaatattgttgaacataatcaaggagacccctggtttgatcgataacaccagggacgccttttggaggtggatgatgaggggttccaagagttaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55382849 |
tggagcaatattgttgaacataatcaaggagacccctggtttgatcgataacaccagggacgccttttggaggtggatgatgaggggttccaagagttaa |
55382948 |
T |
|
| Q |
113 |
taacagtgatatattggacgccccaaactgctgcatatacagacgcgcaagccatcctccggccgagtgaccaatcaatgatagagtggtctcaggaggt |
212 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55382949 |
taacagtgatatattggacaccccaaattgctgcatatacagacgcgcaagccatcctccggccgagtgaccaatcaatgatagagtggtctcaggaggt |
55383048 |
T |
|
| Q |
213 |
gctaaatccatggcctcttgaacagcatcatcaactctcttcaaataccaatcgaggatgggcgttggttgaagagtgccacgccagtaattgggatcga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55383049 |
gctaaatccatggcctcttgaacagcatcatcaactctcttcaaataccaatcgaggatgggcgttggttgaagagtgccacgccagtaattgggatcga |
55383148 |
T |
|
| Q |
313 |
tcaaaccagcggcattccggagccaatcaggtcttgacaccttggcaacaacggtggacacaccgtagttattgttc |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55383149 |
tcaaaccagcggcattccggagccaatcaggtcttgacaccttggcaacaacggtggacacaccgtagttattgttc |
55383225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University