View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4889_low_5 (Length: 278)

Name: NF4889_low_5
Description: NF4889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4889_low_5
NF4889_low_5
[»] chr3 (2 HSPs)
chr3 (1-94)||(55383464-55383557)
chr3 (92-166)||(19341907-19341979)
[»] chr4 (2 HSPs)
chr4 (99-273)||(53730768-53730941)
chr4 (95-174)||(53731276-53731353)
[»] chr2 (2 HSPs)
chr2 (184-271)||(596765-596854)
chr2 (94-174)||(597190-597268)
[»] chr8 (2 HSPs)
chr8 (94-174)||(26936796-26936874)
chr8 (127-274)||(26937204-26937344)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 55383464 - 55383557
Alignment:
Q  1 caagttaacattactgctcgctcactctgcttcccttacttcctctccacccatttctttgcattctctttctattctataaataaataagtaa 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55383464 caagttaacattactgctcgctcactctgcttcccttacttcctctccacccatttctttgcattctctttctattctataaataaataagtaa 55383557  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 19341907 - 19341979
Alignment:
Q  92 taagagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacata 166  Q
    ||||||||||||||||||| |||||| |||||||  ||||||||||| |||| ||||||||||||||||||||||    
T  19341907 taagagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacata 19341979  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 53730768 - 53730941
Alignment:
Q  99 ttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaa 198  Q
    |||||||||||| |||||| |||||||  ||||||||||| |||  ||||||||  |||| | |||||||| ||||         |||||||||||||||    
T  53730768 ttaattgtggtgcactgaccgtgtaaa--agaactttacacagttagccaataaattttttcaacataatcctttttaaaaaaaatgttaatttattcaa 53730865  T
Q  199 taaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctccccattcttctctct 273  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||    
T  53730866 taaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactc-ccccattcttctctct 53730941  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 53731353 - 53731276
Alignment:
Q  95 gagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 174  Q
    |||||||||||||||| |||||| |||||||  ||||||||||| ||||  |||||||||||||||||||||||| ||||    
T  53731353 gagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcaaccaataacattttgccacataatcctttt 53731276  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 596765 - 596854
Alignment:
Q  184 tgttaatttattcaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctccccattcttctct 271  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||| ||||||    
T  596765 tgttaatttatacaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactccccccattattctct 596854  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 597268 - 597190
Alignment:
Q  94 agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 174  Q
    ||||||||||||||||| |||||| |||||||  ||||||||||| |||| | ||||||||||||||||||||||| ||||    
T  597268 agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagtcaataacattttgccacataatcctttt 597190  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 26936796 - 26936874
Alignment:
Q  94 agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 174  Q
    ||||||||||||||||| |||||| |||||||  ||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  26936796 agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacataatcctttt 26936874  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 274
Target Start/End: Complemental strand, 26937344 - 26937204
Alignment:
Q  127 aagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaataaaaggtaaattctgaaggtgtgcctc 226  Q
    ||||| |||||| |||| |||||||| |||||||||||||||| ||||         |||||||||||||||||||||||||        ||||||||||    
T  26937344 aagaaatttacacagtcagccaataaaattttgccacataatcctttttaaaaaaa-tgttaatttattcaataaaaggtaa--------ggtgtgcctc 26937254  T
Q  227 tccacgttcttgtc--agttgtgtcgttactctccccattcttctctctc 274  Q
    ||||||||||||||   ||||||||||||||| ||||||| || ||||||    
T  26937253 tccacgttcttgtctttgttgtgtcgttactccccccatttttttctctc 26937204  T

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