View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890-Insertion-10 (Length: 569)
Name: NF4890-Insertion-10
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 153 - 387
Target Start/End: Complemental strand, 10408643 - 10408410
Alignment:
| Q |
153 |
tatatcgtgaagcaaaagtaagaaaatcgagtctatcataatatgcagnnnnnnnnnngttatccattcatatatcataattaagcattaaattgatttt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
10408643 |
tatatcgtgaagcaaaagtaagaaaatcgagtctatcataatatgcagttttttt---gctatccattcatatatcataattaagcattaaattgatttt |
10408547 |
T |
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| Q |
253 |
gtggtggatagttaataaatttgagataatagtttttt--agagggtggcaagattttaatagagaatgaggagtttctatagatatgccacatagacac |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10408546 |
gtggtggatagttaataaatttgagataatagttttttagagagggtggcaagattttaatagagaatgaggagtttctatagatatgccacatagacac |
10408447 |
T |
|
| Q |
351 |
aatccaagcattagaatgaagaaagtttataattcaa |
387 |
Q |
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||||||||||||| ||||| | |||||| |||||||| |
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| T |
10408446 |
aatccaagcattaaaatgatgcaagtttctaattcaa |
10408410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 10408836 - 10408725
Alignment:
| Q |
18 |
ttaatccaatggccacatctatctaaatctgtatatttttgtatacaaagcgttaattttctcatcaaagaaggcaaagagtttgtttaacgtacaatac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || ||||| |
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| T |
10408836 |
ttaatccaatggccacatctatctaaatctgtatatttttgtatacaaagcgttacttttctcatcaaagaaggcaaagaatttgtttaacatataatac |
10408737 |
T |
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| Q |
118 |
atattgctaaaa |
129 |
Q |
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|||||||||||| |
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| T |
10408736 |
atattgctaaaa |
10408725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 448 - 526
Target Start/End: Complemental strand, 10408367 - 10408289
Alignment:
| Q |
448 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacacccgcaccc |
526 |
Q |
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| T |
10408367 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacaccctcaccc |
10408289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 448 - 526
Target Start/End: Complemental strand, 10391625 - 10391547
Alignment:
| Q |
448 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacacccgcaccc |
526 |
Q |
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| T |
10391625 |
acacatgacatgcaactgttatcagcataactgaattcatcaccttgaaagctcttagggttgatatacacccccaccc |
10391547 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 448 - 512
Target Start/End: Complemental strand, 10403134 - 10403070
Alignment:
| Q |
448 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgat |
512 |
Q |
| |
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| T |
10403134 |
acacaagacatgcaactgttatcagaatgactgaattcatcaccttgaaagctattagggttgat |
10403070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 51168994 - 51169038
Alignment:
| Q |
343 |
atagacacaatccaagcattagaatgaagaaagtttataattcaa |
387 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||| |||||||| |
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| T |
51168994 |
ataggcacaatccaagcattagaatgaagcaagtttctaattcaa |
51169038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 9580138 - 9580085
Alignment:
| Q |
334 |
atatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
387 |
Q |
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||||| ||||||| |||||||||||||||||||||||| |||||| ||||||| |
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| T |
9580138 |
atatgtcacataggcacaatccaagcattagaatgaagcaagtttcaaattcaa |
9580085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 9585833 - 9585780
Alignment:
| Q |
334 |
atatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
387 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||||| |||||| ||||||| |
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| T |
9585833 |
atatgtcacataggcacaatccaagcattagaatgaagcaagtttcaaattcaa |
9585780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 9366716 - 9366669
Alignment:
| Q |
340 |
cacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
387 |
Q |
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||||||| ||||||||||||||||||||||| |||||| |||||||| |
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| T |
9366716 |
cacataggcacaatccaagcattagaatgaaacaagtttctaattcaa |
9366669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 29902789 - 29902739
Alignment:
| Q |
337 |
tgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
387 |
Q |
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|||||||||| |||||||||| ||||||||||||| |||||| ||||||| |
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| T |
29902789 |
tgccacataggcacaatccaaacattagaatgaagcaagtttcaaattcaa |
29902739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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