View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4890-Insertion-12 (Length: 604)

Name: NF4890-Insertion-12
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4890-Insertion-12
NF4890-Insertion-12
[»] chr6 (15 HSPs)
chr6 (9-597)||(32826197-32826792)
chr6 (9-101)||(6978500-6978593)
chr6 (9-91)||(7591059-7591141)
chr6 (16-84)||(33450813-33450881)
chr6 (27-92)||(989507-989572)
chr6 (36-90)||(20207190-20207244)
chr6 (36-90)||(22101213-22101267)
chr6 (46-88)||(33148312-33148354)
chr6 (15-87)||(13214195-13214267)
chr6 (9-88)||(9929297-9929375)
chr6 (25-101)||(26894168-26894246)
chr6 (15-65)||(9540583-9540633)
chr6 (7-88)||(33240886-33240965)
chr6 (20-93)||(6542014-6542087)
chr6 (27-91)||(6890581-6890645)
[»] chr1 (5 HSPs)
chr1 (15-98)||(7439090-7439173)
chr1 (18-92)||(31577995-31578069)
chr1 (27-88)||(38091249-38091310)
chr1 (18-91)||(31767936-31768009)
chr1 (20-88)||(2749215-2749282)
[»] chr2 (6 HSPs)
chr2 (7-101)||(24166792-24166886)
chr2 (9-103)||(37267714-37267808)
chr2 (46-101)||(45203224-45203279)
chr2 (46-91)||(5867942-5867987)
chr2 (25-90)||(28816182-28816246)
chr2 (9-65)||(44647242-44647298)
[»] chr8 (12 HSPs)
chr8 (35-101)||(9045699-9045765)
chr8 (7-101)||(39039704-39039798)
chr8 (27-105)||(44173167-44173245)
chr8 (9-92)||(27157699-27157782)
chr8 (47-101)||(7229072-7229126)
chr8 (7-64)||(29026240-29026297)
chr8 (9-88)||(40506616-40506695)
chr8 (7-101)||(31078800-31078894)
chr8 (26-80)||(39555877-39555931)
chr8 (60-101)||(6030054-6030095)
chr8 (26-102)||(3103761-3103837)
chr8 (25-101)||(7685448-7685523)
[»] chr7 (5 HSPs)
chr7 (25-103)||(44453616-44453694)
chr7 (9-88)||(22713451-22713529)
chr7 (9-71)||(2391586-2391648)
chr7 (18-91)||(40256819-40256892)
chr7 (7-101)||(10382014-10382107)
[»] chr4 (4 HSPs)
chr4 (27-101)||(9603867-9603941)
chr4 (46-88)||(39345421-39345463)
chr4 (7-88)||(38303253-38303334)
chr4 (7-67)||(29491942-29492002)
[»] chr3 (7 HSPs)
chr3 (9-90)||(7925345-7925426)
chr3 (7-71)||(26665523-26665587)
chr3 (9-90)||(25123224-25123305)
chr3 (7-92)||(33513403-33513488)
chr3 (20-87)||(1750080-1750147)
chr3 (7-90)||(18395501-18395583)
chr3 (9-44)||(25468652-25468687)
[»] chr5 (8 HSPs)
chr5 (25-80)||(13271486-13271541)
chr5 (25-88)||(17223085-17223148)
chr5 (9-79)||(27549736-27549806)
chr5 (27-89)||(35323623-35323685)
chr5 (9-78)||(33043868-33043937)
chr5 (46-101)||(38290781-38290836)
chr5 (46-88)||(7599442-7599484)
chr5 (45-91)||(30124539-30124585)


Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 597
Target Start/End: Complemental strand, 32826792 - 32826197
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttatacggatc 108  Q
    ||||||||| ||||| ||||||||||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  32826792 tttttccattctatgagtttctcgcgcgttctatttgaattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttatgcggttc 32826693  T
Q  109 gaaactgtaaaggaggcgtgagaagctcaatggnnnnnnnnnnttaaagagtaaaatatgaaattcctt----ttgaaagtaacaacaatacattgcttt 204  Q
    | ||| ||| || | |||| |||||||||||||          ||||| |||||||| |||||||||||    |||||||||||||   |||||||||||    
T  32826692 ggaaccgtatagaacgcgtaagaagctcaatggaaaaagaaa-ttaaacagtaaaatttgaaattccttggatttgaaagtaacaa---tacattgcttt 32826597  T
Q  205 tacaaaaaa-tagtgaaaatacattgctgtgttagacatgtttggtcattgtcagtcacatgttactgtgttaggaaagcttttcttcctcttctactca 303  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32826596 tacaaaaaaatagtgaaaatacattgctgtgttagacatgtttggtcattgtcagtcacatgttactgtgttaggaaagcttttcttcctcttctactca 32826497  T
Q  304 gacttgggcaatgttcaacttgtcaagcaaatgctacatttagnnnnnnnnctttaaatagtaaatatcagtacaattttattgttgctgccattctttc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32826496 gacttgggcaatgttcaacttgtcaagcaaatgctacatttagttttttttctttaaatagtaaatatcagtacaattttattgttgctgccattctttc 32826397  T
Q  404 aatttaattaacttgccaaccttataactccaataaattaagtgtggcaa-nnnnnnnnaatatgtagaattttagatgaagtctacatgtatannnnnn 502  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||          
T  32826396 aacttaattaacttgccaaccttataactccaataaattaagtgtggcaatttttttttaatatgtagaattttagatgaagtctacatgtatatttttt 32826297  T
Q  503 nagatacatttctgtttgagatctaaagagtaataaagataattggtcctc-----tttccagannnnnnnnatatagggtacgccgtcacatcaccacc 597  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||        ||||||||||||||||||||||||||||    
T  32826296 tagatacatttctgtttgagatctaaagagtaataaagataattggtcctctttaatttccagattttttttatatagggtacgccgtcacatcaccacc 32826197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 6978593 - 6978500
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacg-agtttttggaggttttatggaatttttat 101  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||| | ||||||||||||| | ||||||||||||||||||| |||||||    
T  6978593 tttttccatcctatgagtttctcgtgcgtcctatttggattctaaaatctaaaatatttcaacgtaatttttggaggttttatggagtttttat 6978500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 7591059 - 7591141
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatg 91  Q
    |||| ||||||||||  |||| ||||||||||||| ||||||||||||  |||||||||||||| |||||| |||||||||||    
T  7591059 ttttcccatcctatgaatttcccgcgcgtcctattaagattctaaaatccgaaatatttcaacgtgttttttgaggttttatg 7591141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 33450813 - 33450881
Alignment:
Q  16 atcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggagg 84  Q
    |||||||| | |||| ||||||||||||  |||||||||||| |||||||||||||| |||||||||||    
T  33450813 atcctatgagcttcttgcgcgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggagg 33450881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 989507 - 989572
Alignment:
Q  27 ttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatgg 92  Q
    ||||||| || |||||| ||| |||||||| ||||||||||||||| |||||||||| ||||||||    
T  989507 ttctcgcacgccctattcagaatctaaaatctgaaatatttcaacgtgtttttggagattttatgg 989572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 20207244 - 20207190
Alignment:
Q  36 gtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttat 90  Q
    |||||||| |||||||||||| ||||||||||||||| ||||||| || ||||||    
T  20207244 gtcctattcagattctaaaatctgaaatatttcaacgtgtttttgaagtttttat 20207190  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 22101267 - 22101213
Alignment:
Q  36 gtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttat 90  Q
    |||||||| |||||||||||| ||||||||||||||| ||||||| || ||||||    
T  22101267 gtcctattcagattctaaaatctgaaatatttcaacgtgtttttgaagtttttat 22101213  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 33148354 - 33148312
Alignment:
Q  46 gattctaaaatttgaaatatttcaacgagtttttggaggtttt 88  Q
    |||||||||| |||||||||||||||| |||||||||||||||    
T  33148354 gattctaaaaattgaaatatttcaacgtgtttttggaggtttt 33148312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 13214267 - 13214195
Alignment:
Q  15 catcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttt 87  Q
    |||| ||| ||||| |||||| ||||||| ||||| ||||||  |||||||||||||| |||||| |||||||    
T  13214267 catcttatatgtttgtcgcgcatcctattcagattttaaaatccgaaatatttcaacgtgtttttagaggttt 13214195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 9929297 - 9929375
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggtttt 88  Q
    ||||| ||||||||| || | |||| | ||||||||||||| |||||| |||||| |||||||| | |||||||||||||    
T  9929297 ttttttcatcctatgagtatgtcgcacctcctatttagattttaaaatctgaaatctttcaacgtg-ttttggaggtttt 9929375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 26894246 - 26894168
Alignment:
Q  25 gtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaac--gagtttttggaggttttatggaatttttat 101  Q
    |||||||| ||||||||||| | ||||||||||  |||||||| |||  | ||||||||||||||||||  ||||||||    
T  26894246 gtttctcgtgcgtcctatttggtttctaaaattcaaaatatttgaacgtgtgtttttggaggttttatgagatttttat 26894168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 9540633 - 9540583
Alignment:
Q  15 catcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatat 65  Q
    ||||||||| ||||||| |||| |||||| |||||||||||| ||||||||    
T  9540633 catcctatgagtttctcacgcgccctattcagattctaaaatctgaaatat 9540583  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 33240965 - 33240886
Alignment:
Q  7 attttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggtttt 88  Q
    |||||||  |||||||| |||||||| ||| ||||||  |||||||||||  |||||||||||||  ||||||| |||||||    
T  33240965 attttttatatcctatgagtttctcgtgcgccctattcggattctaaaatccgaaatatttcaac--gtttttgaaggtttt 33240886  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 6542087 - 6542014
Alignment:
Q  20 tatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatgga 93  Q
    |||| |||||||| | |||||||| |||||||||||||  |||||||| |||| | ||||| || |||||||||    
T  6542087 tatgagtttctcgtgtgtcctattcagattctaaaattcaaaatattttaacgtgcttttgaagattttatgga 6542014  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 6890645 - 6890581
Alignment:
Q  27 ttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatg 91  Q
    ||||||| | |||||||| ||||  ||||| ||||||||||||| | ||||||| ||||||||||    
T  6890645 ttctcgcacttcctatttggatttcaaaatctgaaatatttcaatgtgtttttgaaggttttatg 6890581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 7439173 - 7439090
Alignment:
Q  15 catcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttt 98  Q
    ||||||||| | ||||||||||||||||| | |||||||||| | ||||||||||||| ||||||| ||||||||||| |||||    
T  7439173 catcctatgagattctcgcgcgtcctattcaaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatgggatttt 7439090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 31578069 - 31577995
Alignment:
Q  18 cctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatgg 92  Q
    |||||| | |||||||||| ||||||| |||||||||||  |||||||||||||| |||||||||||||||||||    
T  31578069 cctatgagcttctcgcgcgccctatttggattctaaaatccgaaatatttcaacgtgtttttggaggttttatgg 31577995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 38091310 - 38091249
Alignment:
Q  27 ttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggtttt 88  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| || ||| ||| |||||||    
T  38091310 ttctcgcgcgtcctattcagattctaaaattcgaaatatttcaccgtgttattgaaggtttt 38091249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 31768009 - 31767936
Alignment:
Q  18 cctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatg 91  Q
    |||||| | ||||| |||| ||||||| |||| ||||||  |||||||||||||| ||||||| | ||||||||    
T  31768009 cctatgcgcttctcacgcgccctatttggattttaaaatccgaaatatttcaacgtgtttttgaaagttttatg 31767936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 2749282 - 2749215
Alignment:
Q  20 tatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggtttt 88  Q
    |||| |||||||||||| || ||||||||||||||||  ||||| |||||||  | |||||||||||||    
T  2749282 tatgagtttctcgcgcgcccaatttagattctaaaatccgaaatgtttcaacttg-ttttggaggtttt 2749215  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 24166792 - 24166886
Alignment:
Q  7 attttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    |||||||||| |||||| ||||||| |||| ||||||  |||||| ||||| |||||||||||||  |||||| ||||||||||||| |||||||    
T  24166792 attttttccaccctatgagtttctcacgcgccctattcggattcttaaattcgaaatatttcaacatgtttttagaggttttatggagtttttat 24166886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 37267714 - 37267808
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttatac 103  Q
    |||||||| | |||| | |||||| | | ||||||| |||||||||||  ||||||||| |||| ||||| ||||||||||||  ||||||||||    
T  37267714 tttttccaccttatgagcttctcgtgtgccctatttggattctaaaatccgaaatattttaacgtgttttgggaggttttatgagatttttatac 37267808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 45203224 - 45203279
Alignment:
Q  46 gattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    |||||||||||  |||||||||||| | |||||| |||||||||||| ||||||||    
T  45203224 gattctaaaatccgaaatatttcaatgtgtttttcgaggttttatgggatttttat 45203279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 5867942 - 5867987
Alignment:
Q  46 gattctaaaatttgaaatatttcaacgagtttttggaggttttatg 91  Q
    |||| |||||| ||||||||||||||| |||||||||| |||||||    
T  5867942 gattttaaaatctgaaatatttcaacgtgtttttggagattttatg 5867987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 28816246 - 28816182
Alignment:
Q  25 gtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttat 90  Q
    |||||||| ||| |||||| | ||| |||||||| ||||||||||||| | |||||||||||||||    
T  28816246 gtttctcgtgcgccctattcaaattataaaattttaaatatttcaacgtg-ttttggaggttttat 28816182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 44647298 - 44647242
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatat 65  Q
    ||||| ||||||||  | || |||||||||||| ||||||||||||||| |||||||    
T  44647298 ttttttcatcctataagcttatcgcgcgtcctacttagattctaaaattcgaaatat 44647242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 9045765 - 9045699
Alignment:
Q  35 cgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    ||||||||| |||||  ||||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  9045765 cgtcctattcagatttaaaaatctgaaatatttcaacgtgtttttggaggttttatggagtttttat 9045699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 39039704 - 39039798
Alignment:
Q  7 attttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    ||||||| ||||||||  | |||| |||||||||||||||||||||||||  |||| ||||||||| |||||| || ||||||||| | ||||||    
T  39039704 atttttttcatcctataagcttcttgcgcgtcctatttagattctaaaatccgaaacatttcaacgtgtttttagaagttttatgggaattttat 39039798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 44173167 - 44173245
Alignment:
Q  27 ttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttatacgg 105  Q
    |||||||||| |||||| ||||||||||||  ||||||||||||||  ||||||||| ||||||| | ||||| |||||    
T  44173167 ttctcgcgcgccctattcagattctaaaatcagaaatatttcaacgtatttttggagattttatgaagtttttttacgg 44173245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 27157782 - 27157699
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatgg 92  Q
    |||||||| |||||| |||||||| |||| |||||  |||||||||||  ||| |||||||||| | |||||||| ||||||||    
T  27157782 tttttccaccctatgagtttctcgtgcgtgctattcggattctaaaatccgaattatttcaacgtggttttggagattttatgg 27157699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 7229126 - 7229072
Alignment:
Q  47 attctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    |||||||||||||||||||||||||  ||||||| | ||||||||| ||||||||    
T  7229126 attctaaaatttgaaatatttcaacatgtttttgaatgttttatgggatttttat 7229072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 29026297 - 29026240
Alignment:
Q  7 attttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaata 64  Q
    |||||||| |||||||| ||||||||||  ||||||| | ||||||||||||||||||    
T  29026297 attttttctatcctatgagtttctcgcgtatcctattcaaattctaaaatttgaaata 29026240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 40506616 - 40506695
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggtttt 88  Q
    ||||| ||||||||| ||||||||   | ||||||| |||| ||||||  |||||||||||||| | |||||||||||||    
T  40506616 ttttttcatcctatgagtttctcgtatgccctatttggattgtaaaatccgaaatatttcaacgtgattttggaggtttt 40506695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 31078894 - 31078800
Alignment:
Q  7 attttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    ||||||| | || |||| ||||||||||| |||||||| |  ||||||||||||||| ||| |||| ||||| | |  ||||||||||| |||||    
T  31078894 atttttttcttcttatgagtttctcgcgcatcctatttggtctctaaaatttgaaatgttttaacgtgttttggaaatttttatggaatatttat 31078800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 39555877 - 39555931
Alignment:
Q  26 tttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttg 80  Q
    ||||||||||||||| || ||||| |||||| |||||| |||||||| |||||||    
T  39555877 tttctcgcgcgtcctgttcagattttaaaatctgaaatgtttcaacgtgtttttg 39555931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 6030095 - 6030054
Alignment:
Q  60 aaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    ||||||||||||| ||||||||| |||||||| |||||||||    
T  6030095 aaatatttcaacgtgtttttggaagttttatgaaatttttat 6030054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 3103761 - 3103837
Alignment:
Q  26 tttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttata 102  Q
    ||||||||||  | |||| ||||| |||||| | ||||||||||||| ||||||| || ||||||  ||||||||||    
T  3103761 tttctcgcgcaccttattcagattttaaaatctaaaatatttcaacgtgtttttgaagattttattaaatttttata 3103837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 7685448 - 7685523
Alignment:
Q  25 gtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    ||||||||| | ||||||||| ||| |||||| |||||||||||||||   ||||| | |||||||||| |||||||    
T  7685448 gtttctcgcacatcctatttaaattttaaaatctgaaatatttcaacg-tattttgaaagttttatggagtttttat 7685523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 44453616 - 44453694
Alignment:
Q  25 gtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttatac 103  Q
    ||||||||  |||||||||  |||||||||||| |||||||||||||| ||||||||| |||||||||| | |||||||    
T  44453616 gtttctcgtacgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggaagttttatggagtctttatac 44453694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 22713529 - 22713451
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggtttt 88  Q
    |||||||| | |||| |||||||| ||| |||||||  ||| |||||| ||||||||||||||| |||||||||||||||    
T  22713529 tttttccaccttatgagtttctcgtgcg-cctatttgaattttaaaatctgaaatatttcaacgtgtttttggaggtttt 22713451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 2391586 - 2391648
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaac 71  Q
    ||||| ||||||||| ||||||||||||  |||||| |||||||||||  |||||||||||||    
T  2391586 ttttttcatcctatgagtttctcgcgcgcactatttggattctaaaatccgaaatatttcaac 2391648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 40256819 - 40256892
Alignment:
Q  18 cctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatg 91  Q
    |||||| |||| ||||||| | ||||  |||| |||||| ||||||||| ||||| ||||||||||||||||||    
T  40256819 cctatgagtttttcgcgcgccttattcggattttaaaatctgaaatattgcaacgtgtttttggaggttttatg 40256892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 10382107 - 10382014
Alignment:
Q  7 attttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    |||||||||||| ||||  |||||||| |||| |||| ||||| ||||||  |||| |||| |||| ||||||| |||||||||||  |||||||    
T  10382107 attttttccatcgtatgactttctcgcacgtcttattaagattttaaaatccgaaa-attttaacgtgtttttgaaggttttatggggtttttat 10382014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 9603941 - 9603867
Alignment:
Q  27 ttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    ||||||||||||||||| | |||||||||| |||||||||| ||||  ||||||||||||||||||  |||||||    
T  9603941 ttctcgcgcgtcctattcaaattctaaaatctgaaatattttaacgtatttttggaggttttatggggtttttat 9603867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 39345463 - 39345421
Alignment:
Q  46 gattctaaaatttgaaatatttcaacgagtttttggaggtttt 88  Q
    ||||||||||||||||||||| ||| | |||||||||||||||    
T  39345463 gattctaaaatttgaaatattacaaagtgtttttggaggtttt 39345421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 38303253 - 38303334
Alignment:
Q  7 attttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggtttt 88  Q
    ||||||||||| ||||| |||||||||||   |||||  |||  |||||| |||||| |||||| | |||||||||||||||    
T  38303253 attttttccattctatgagtttctcgcgcactctattcggatcttaaaatctgaaatgtttcaatgcgtttttggaggtttt 38303334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 29492002 - 29491942
Alignment:
Q  7 attttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatattt 67  Q
    |||||||||| | |||  ||||||||||||| ||||| ||||| |||||||| ||||||||    
T  29492002 attttttccaccttataagtttctcgcgcgttctattcagattttaaaatttaaaatattt 29491942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 7925345 - 7925426
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttat 90  Q
    |||||||| ||||||  |||||| || ||||||||||||||||||||| |||||||||||||||  |||||  |||||||||    
T  7925345 tttttccaccctatgaatttctcacgtgtcctatttagattctaaaatctgaaatatttcaacgtattttttaaggttttat 7925426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 26665587 - 26665523
Alignment:
Q  7 attttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaac 71  Q
    |||||| |||||||||| |||||||||||||||||||| |||| ||||||  |||||||||||||    
T  26665587 atttttcccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaac 26665523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 25123224 - 25123305
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttat 90  Q
    |||||||| | |||| |||| ||||||| |||||| ||||||||||||   |||||||| |||| |||||||||||||||||    
T  25123224 tttttccaccatatgagtttttcgcgcgccctattcagattctaaaatccaaaatattttaacgcgtttttggaggttttat 25123305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 33513488 - 33513403
Alignment:
Q  7 attttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttatgg 92  Q
    |||||||||| |||||| |||||| | ||  ||||||  |||||||||||   ||||||||||||| ||||| |||||||||||||    
T  33513488 attttttccaccctatgagtttcttgtgcaccctattcggattctaaaatcctaaatatttcaacgtgttttcggaggttttatgg 33513403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 1750080 - 1750147
Alignment:
Q  20 tatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttt 87  Q
    |||| |||||||| ||||||||||| ||||||||||| | |||| |||||||| | ||| ||||||||    
T  1750080 tatgagtttctcgtgcgtcctatttggattctaaaatctaaaatgtttcaacgtgatttaggaggttt 1750147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 18395501 - 18395583
Alignment:
Q  7 attttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggttttat 90  Q
    |||||| |||||||||| |||| ||||||| |||||||  ||||| ||||  |||||||||||| | |||| ||||||||||||    
T  18395501 atttttcccatcctatgagttt-tcgcgcgccctatttgtattctgaaatccgaaatatttcaatgtgtttgtggaggttttat 18395583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 25468652 - 25468687
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctattt 44  Q
    ||||||||||||||||||| ||||||||||||||||    
T  25468652 tttttccatcctatgtgttactcgcgcgtcctattt 25468687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 13271541 - 13271486
Alignment:
Q  25 gtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttg 80  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||||| |||||||    
T  13271541 gtttctcgcgcgtcctatttgaattctaaaatctgaaatatttcaacgtgtttttg 13271486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 17223085 - 17223148
Alignment:
Q  25 gtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggtttt 88  Q
    ||||||| |||| | ||||||||||||||||| ||||||||||||||| ||||||| |||||||    
T  17223085 gtttctcacgcgccttatttagattctaaaatctgaaatatttcaacgtgtttttgcaggtttt 17223148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 27549806 - 27549736
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagttttt 79  Q
    ||||||| || |||| ||||||||| | || |||||||||||||||||||||||| |||||||| ||||||    
T  27549806 tttttccgtcatatgagtttctcgcacatcatatttagattctaaaatttgaaatgtttcaacgtgttttt 27549736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 35323623 - 35323685
Alignment:
Q  27 ttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttttggaggtttta 89  Q
    |||||| |||||||||| ||||||||||||  ||||||||||||||  |||||| ||||||||    
T  35323623 ttctcgtgcgtcctattcagattctaaaatccgaaatatttcaacgtatttttgaaggtttta 35323685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 33043868 - 33043937
Alignment:
Q  9 tttttccatcctatgtgtttctcgcgcgtcctatttagattctaaaatttgaaatatttcaacgagtttt 78  Q
    ||||||||||||||| |||||| || |  |||||||| |||||||||| |||||||||| |||| |||||    
T  33043868 tttttccatcctatgagtttcttgcacaccctatttaaattctaaaatctgaaatattttaacgtgtttt 33043937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 38290781 - 38290836
Alignment:
Q  46 gattctaaaatttgaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    |||||||||||| |||| ||||||||  |||||||||||||||||||  |||||||    
T  38290781 gattctaaaattagaaagatttcaacatgtttttggaggttttatggggtttttat 38290836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 7599442 - 7599484
Alignment:
Q  46 gattctaaaatttgaaatatttcaacgagtttttggaggtttt 88  Q
    |||||||||||||||||||||| || | |||||||||||||||    
T  7599442 gattctaaaatttgaaatatttaaaggtgtttttggaggtttt 7599484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 30124539 - 30124585
Alignment:
Q  45 agattctaaaatttgaaatatttcaacgagtttttggaggttttatg 91  Q
    |||||||||||||| ||||| ||||||| |||||| |||||||||||    
T  30124539 agattctaaaatttaaaatagttcaacgtgtttttagaggttttatg 30124585  T

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