View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890-Insertion-14 (Length: 552)
Name: NF4890-Insertion-14
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890-Insertion-14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 8 - 552
Target Start/End: Complemental strand, 30620378 - 30619830
Alignment:
| Q |
8 |
catctgtgcctcttctcaatgcaaatgtgatgagtggtgagatttcctcatcggaaaacaaacaaccacccacaactgcagttgtacttgatagcaacca |
107 |
Q |
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| T |
30620378 |
catctgtgcctcttctcaatgcaaatgtgatgagtggtgagatttcctcatcggaaaacaaacaaccacccacaactgcagttgtacttgatagcaacca |
30620279 |
T |
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| Q |
108 |
aacaagtgtcgttgaaagtgctgtgcctagaaaatccgttgatacatttggacaaagaacttccatttaccgtggtgtgacaaggttctctattttaaca |
207 |
Q |
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| T |
30620278 |
aacaagtgtcgttgaaagtgctgtgcctagaaaatccgttgatacatttggacaaagaacttccatttaccgtggtgtaacaaggttctctattttaaca |
30620179 |
T |
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| Q |
208 |
tcaaaaacatttatttatt----tattctcattgtatgagtaaaaacctataagtattttctatgctattttaaagaaaaaagaacttagcctttctatt |
303 |
Q |
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| T |
30620178 |
tcaaaaacatttatttatttatttattcttattgtatcaataaaaacctataagtattttctttgctattttaaagaaaaaagaacttagcctttctatt |
30620079 |
T |
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| Q |
304 |
tttgagatgcatgatggtgagttttagagttttgaattgattgaaggcatagatggacagggagatatgaagctcacctttgggataatagttgtagaag |
403 |
Q |
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| T |
30620078 |
tttgagatgcatgatggtgag-tttagagttttgaattgattgaaggcatagatggacagggagatatgaagctcacctttgggataatagttgtagaag |
30619980 |
T |
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| Q |
404 |
agaggggcagactcgcaaaggaaggcaaggtaattagatctacaaatttatgttccctgttgtattt----tttattaataacattgattaagtgaaata |
499 |
Q |
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| T |
30619979 |
agaggggcagactcgcaaaggaaggcaaggtaattagatctacaaatttatgttccctgttgtatttttaatttattaataacattgattaagtgaaata |
30619880 |
T |
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| Q |
500 |
tatactattattattacttaacaattgcttttgttctttgcatgccattttcc |
552 |
Q |
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| T |
30619879 |
tatac---tactattacttaacaattgcttttgttctttgcatgccattttcc |
30619830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 436
Target Start/End: Original strand, 7210439 - 7210527
Alignment:
| Q |
348 |
aggcatagatggacagggagatatgaagctcacctttgggataatagttgtagaagagaggggcagactcgcaaaggaaggcaaggtaa |
436 |
Q |
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| T |
7210439 |
aggcatagatggactgggagatatgaagcacatttatgggataatagttgcagaaaagaagggcaaacaaggaaaggaaggcaaggtaa |
7210527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 41965314 - 41965262
Alignment:
| Q |
351 |
catagatggacagggagatatgaagctcacctttgggataatagttgtagaag |
403 |
Q |
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| T |
41965314 |
catagatggaccggaaggtatgaagctcacctttgggataatacttgtagaag |
41965262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 406
Target Start/End: Complemental strand, 13683569 - 13683511
Alignment:
| Q |
348 |
aggcatagatggacagggagatatgaagctcacctttgggataatagttgtagaagaga |
406 |
Q |
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| T |
13683569 |
aggcatagatggacaggaagatatgaagcccatctatgggataacagctgtagaagaga |
13683511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 436
Target Start/End: Complemental strand, 5178564 - 5178479
Alignment:
| Q |
351 |
catagatggacagggagatatgaagctcacctttgggataatagttgtagaagagaggggcagactcgcaaaggaaggcaaggtaa |
436 |
Q |
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| T |
5178564 |
cataggtggacaggtagatatgaagctcatctatgggataacagctgtaaaaaagagggccaagctagaaaaggaaagcaaggtaa |
5178479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 13684089 - 13684049
Alignment:
| Q |
145 |
gttgatacatttggacaaagaacttccatttaccgtggtgt |
185 |
Q |
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| T |
13684089 |
gttgatacttttggtcaaagaacttcaatttaccgtggtgt |
13684049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 24563207 - 24563155
Alignment:
| Q |
351 |
catagatggacagggagatatgaagctcacctttgggataatagttgtagaag |
403 |
Q |
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| T |
24563207 |
catagatggactggaaggtatgaagctcacctttgggataacagctgtagaag |
24563155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 53236005 - 53235953
Alignment:
| Q |
351 |
catagatggacagggagatatgaagctcacctttgggataatagttgtagaag |
403 |
Q |
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| T |
53236005 |
catagatggacggggagatatgaagcacatctatgggacaatagttgcagaag |
53235953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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