View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4890-Insertion-2 (Length: 960)
Name: NF4890-Insertion-2
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890-Insertion-2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Complemental strand, 16452970 - 16452459
Alignment:
| Q |
8 |
ggaattggacatctcttggaccacatgtttgttcatatagcacatggattccgctaaacttagcaacctctcttacagagtcctcgttgtttgttatatg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16452970 |
ggaattggacatctcttggaccacatgtttgttcatatagcacatggattccgctaaacttagcaacctctcttatagagtcctcgttgtttgttatatg |
16452871 |
T |
|
| Q |
108 |
atccgcatatgacacctccacgtgattccacccattatctgcaaacactatgtcctcattatcttcaaactgtagcaaaagcacatgatcagttgctatc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16452870 |
atccgcatatgacacctccacgtgattccacccattatctgtaaacactatgtcctcattatcttcaaactgtagcaaaagcacatgatcagttgctatc |
16452771 |
T |
|
| Q |
208 |
atgaactcgtagattttctgacagccaagcaactgtttattgccattgatgcatactcgagggctaaacttgacctttatatgtttctcatccccatgtc |
307 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
16452770 |
atgaactcgtagattttctgacaacctagcgactgtttatggccattgatgcatactcgagggctaaacttgaccttgatatgtttctcatccccacgtc |
16452671 |
T |
|
| Q |
308 |
caataacaagacaaagagaaatagcagggaatttgttacgaaaccagaaagacattgaccctccccttgtacgatgcttgaaccactttggaannnnnnn |
407 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
16452670 |
ctataacaagacaaagagaaatagcagggaatttgttacaaaaccagaaagacgttgaccctccccttgtatgatgcgtgaaccactttggaattttttt |
16452571 |
T |
|
| Q |
408 |
ncccggaaaaaagaactttttgtttccagcttctacccattcctgtcaatcataagta---aagaatggttaaaatttcaccaacgacatttagacattg |
504 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
16452570 |
ccccggaaaaaataactttttgtttccagcttctacccattcctgttgatcataagtatagaagaatggttaaaattt-acca---gcatttagacattg |
16452475 |
T |
|
| Q |
505 |
atagtaattgatgata |
520 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
16452474 |
atagtagttgatgata |
16452459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 523 - 885
Target Start/End: Complemental strand, 16452160 - 16451793
Alignment:
| Q |
523 |
ataaagagaggaccttattacataacatgcttatgatctgggaagtcaagcatgtgcatccttttgcagaaaaactgtccaagtttgatggaaagcatgt |
622 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| |||||||| | ||||||||||||||||| ||||| | |||||||| ||||| | ||| |
|
|
| T |
16452160 |
ataaagagaggacctgattacataacatgcttatactctgtaaagtcaaggaagtgcatccttttgcagagaaactattcaagtttggtggaagccctgt |
16452061 |
T |
|
| Q |
623 |
aatttctcgaagacacgcgcagtcatccaaaatcagttccttcagaaagcaactttgttcagtgcattcaggaagaactccgaggtctaagcaattcaag |
722 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| |||||||||| || | || | |||||||| |||||| |||||||||| | ||||| |
|
|
| T |
16452060 |
aatttctcgaagacatgcacagtcatccaaaatcagttcctttagaaagcaacattctgcattacattcaggtagaactgtgaggtctaagaatctcaag |
16451961 |
T |
|
| Q |
723 |
gatatgcatcctttcacagaaattctttctaagttcctcgg-atccctataatttctcaaagacgactacaatcatccatcttaagattccttaaaagat |
821 |
Q |
| |
|
|||||||| |||||||| |||||| |||||| ||||| || |||||| ||||||||| |||| |||| ||||| ||||||||||| ||||| | ||||| |
|
|
| T |
16451960 |
gatatgcaccctttcacggaaattttttctatattccttggaatccctctaatttctcgaagaagactgcaatcgtccatcttaaggttcctcagaagat |
16451861 |
T |
|
| Q |
822 |
g--actctttgatccatgcatgaagagttatg-aactattccatgatagg-ttaaatctttcacattg |
885 |
Q |
| |
|
| ||||||||||||| ||||||||||||||| || |||||| ||||||| |||| |||||||||||| |
|
|
| T |
16451860 |
gacactctttgatccacgcatgaagagttatgaaattattccctgataggtttaactctttcacattg |
16451793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 523 - 884
Target Start/End: Original strand, 16351871 - 16352237
Alignment:
| Q |
523 |
ataaagagaggaccttattacataacatgcttatgatctgggaagtcaagcatgtgcatccttttgcagaaaaactgtccaagtttgatggaaagcatgt |
622 |
Q |
| |
|
|||||||||| ||||||||| |||||||| | || | |||||||||||| ||||||| | ||||||||| ||| | ||||||||| |||| | | |
|
|
| T |
16351871 |
ataaagagagaaccttattaaataacatgttcatactatgggaagtcaaggatgtgcagctttttgcagagaaattatccaagtttttaggaagcccctt |
16351970 |
T |
|
| Q |
623 |
aatttctcgaagacacgcgcagtcatccaaaatcagttccttcagaaagcaactttgttcagtgcattcaggaagaactccgaggtctaagcaattcaag |
722 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||||||| | |||||| || ||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
16351971 |
aatttctaaaagacacctacaatcatccaaaatcagttccttcaaagagcaacattcagcagtgcaatcaggaagaactgcgaggtctaagcatctcaag |
16352070 |
T |
|
| Q |
723 |
gatatgcatcctttcacagaaattctttctaagttcctcgg-atccctataatttctcaaagacgactacaatcatccatcttaagattccttaaaagat |
821 |
Q |
| |
|
|| |||||||||||| ||||| | ||||||| ||||| || |||||| |||||||| || | | |||||||||| | |||||||||| |||| | |
|
|
| T |
16352071 |
aatttgcatcctttcaaagaaagtttttctaatttccttggaatccctttaatttcttgtagttggttgcaatcatccagcgtaagattcctcaaaaagt |
16352170 |
T |
|
| Q |
822 |
gac--tctttgatccatgcatgaagagttatg-aactattccatgatagg-ttaaatctttcacatt |
884 |
Q |
| |
|
||| |||||||||||||||||||||||| || || ||||| |||||| |||||||||||||||| |
|
|
| T |
16352171 |
gacagtctttgatccatgcatgaagagttgtgaaattattcttcgataggtttaaatctttcacatt |
16352237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 310 - 479
Target Start/End: Original strand, 16350283 - 16350452
Alignment:
| Q |
310 |
ataacaagacaaagagaaatagcagggaatttgttacgaaaccagaaagacattgaccctccccttgtacgatgcttgaaccactttggaannnnnnnnc |
409 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||| | |||||||||||||||||||||||| |||| || |||| ||||| | ||||| | |
|
|
| T |
16350283 |
ataacaaggcacagagaaatggcagggaatttgttgcaaaaccagaaagacattgaccctcctcttgcactatgcgaaaaccattctggaattttttttc |
16350382 |
T |
|
| Q |
410 |
ccggaaaaaagaactttttgtttccagcttctacccattcctgtcaatcataagtaaagaatggttaaaa |
479 |
Q |
| |
|
| || |||| ||| ||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
16350383 |
ctgggaaaacaaacattttgtttccagcctctacccattcctgtcaatcataagtatagaactgttaaaa |
16350452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 16350123 - 16350194
Alignment:
| Q |
144 |
atctgcaaacactatgtcctcattatcttcaaactgtagcaaaagcacatgatcagttgctatcatgaactcgta |
218 |
Q |
| |
|
|||| |||||||||||||| ||| ||||||||| |||||||| | |||||||||| |||||||||||||||| |
|
|
| T |
16350123 |
atcttcaaacactatgtccacat---cttcaaacttcagcaaaagtatatgatcagtttctatcatgaactcgta |
16350194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 29718612 - 29718666
Alignment:
| Q |
312 |
aacaagacaaagagaaatagcagggaatttgttacgaaaccagaaagacattgac |
366 |
Q |
| |
|
||||| |||||||| || ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
29718612 |
aacaacacaaagagctatggcaggaaatttgttacgaaaccagaaagaaattgac |
29718666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University