View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4890-Insertion-6 (Length: 797)

Name: NF4890-Insertion-6
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4890-Insertion-6
NF4890-Insertion-6
[»] scaffold0005 (1 HSPs)
scaffold0005 (7-797)||(54087-54864)
[»] chr4 (17 HSPs)
chr4 (7-797)||(14784866-14785643)
chr4 (499-606)||(4698636-4698743)
chr4 (497-587)||(31240889-31240979)
chr4 (502-611)||(4698646-4698755)
chr4 (502-638)||(55292108-55292244)
chr4 (502-636)||(19485588-19485722)
chr4 (502-635)||(38687910-38688043)
chr4 (502-637)||(4758774-4758909)
chr4 (502-592)||(18135355-18135445)
chr4 (502-604)||(31854409-31854511)
chr4 (502-599)||(52535986-52536083)
chr4 (502-637)||(36099503-36099638)
chr4 (502-604)||(2385225-2385327)
chr4 (502-592)||(2411882-2411972)
chr4 (502-592)||(18430297-18430387)
chr4 (502-604)||(31227287-31227389)
chr4 (346-408)||(52454576-52454638)
[»] chr3 (19 HSPs)
chr3 (25-466)||(13415321-13415759)
chr3 (502-637)||(8243679-8243814)
chr3 (502-636)||(10049684-10049818)
chr3 (488-641)||(23825151-23825304)
chr3 (502-606)||(22003812-22003916)
chr3 (502-606)||(22011329-22011433)
chr3 (502-604)||(6086931-6087033)
chr3 (502-604)||(25846541-25846643)
chr3 (502-604)||(52114054-52114156)
chr3 (502-637)||(8243698-8243833)
chr3 (502-641)||(9465064-9465203)
chr3 (502-637)||(26999037-26999172)
chr3 (500-599)||(55139187-55139286)
chr3 (502-604)||(335405-335507)
chr3 (502-604)||(14768114-14768216)
chr3 (502-636)||(18765256-18765390)
chr3 (502-643)||(9440144-9440285)
chr3 (502-607)||(44593217-44593322)
chr3 (502-611)||(55139196-55139305)
[»] chr7 (9 HSPs)
chr7 (499-620)||(26563934-26564055)
chr7 (274-431)||(35830039-35830196)
chr7 (502-638)||(7107646-7107782)
chr7 (502-637)||(12763245-12763380)
chr7 (502-599)||(7463465-7463562)
chr7 (502-638)||(41850592-41850728)
chr7 (496-604)||(46449808-46449916)
chr7 (502-599)||(26563956-26564053)
chr7 (502-639)||(30866261-30866398)
[»] chr8 (7 HSPs)
chr8 (521-610)||(24255895-24255984)
chr8 (502-642)||(2229062-2229202)
chr8 (502-636)||(41915610-41915744)
chr8 (503-604)||(8242240-8242341)
chr8 (512-637)||(43135070-43135195)
chr8 (502-593)||(22781898-22781989)
chr8 (502-604)||(2339306-2339408)
[»] chr2 (13 HSPs)
chr2 (504-600)||(22857822-22857918)
chr2 (502-637)||(44737280-44737414)
chr2 (488-604)||(45065610-45065726)
chr2 (502-639)||(7765789-7765926)
chr2 (499-611)||(22857827-22857938)
chr2 (502-604)||(16241297-16241399)
chr2 (566-623)||(27182086-27182143)
chr2 (566-623)||(27831628-27831685)
chr2 (502-606)||(20427017-20427121)
chr2 (502-604)||(42263500-42263602)
chr2 (512-638)||(42341644-42341770)
chr2 (502-604)||(43657955-43658057)
chr2 (502-599)||(38598472-38598569)
[»] chr1 (6 HSPs)
chr1 (502-626)||(33325349-33325473)
chr1 (502-636)||(10065253-10065387)
chr1 (502-635)||(28989288-28989421)
chr1 (502-604)||(14281606-14281708)
chr1 (502-606)||(23398096-23398200)
chr1 (502-592)||(29312455-29312545)
[»] chr6 (6 HSPs)
chr6 (502-637)||(7405460-7405595)
chr6 (502-594)||(6045721-6045813)
chr6 (502-637)||(31971027-31971162)
chr6 (502-604)||(390835-390937)
chr6 (502-599)||(6047831-6047928)
chr6 (502-599)||(6801586-6801683)
[»] chr5 (12 HSPs)
chr5 (502-641)||(29374186-29374325)
chr5 (497-592)||(38393797-38393892)
chr5 (502-604)||(6910728-6910830)
chr5 (502-604)||(7749934-7750036)
chr5 (502-604)||(9601623-9601725)
chr5 (502-604)||(37699810-37699912)
chr5 (502-599)||(7945853-7945950)
chr5 (502-638)||(25027710-25027846)
chr5 (502-637)||(13144896-13145031)
chr5 (502-637)||(23411181-23411316)
chr5 (502-604)||(31802988-31803090)
chr5 (502-604)||(41989580-41989682)
[»] scaffold0123 (1 HSPs)
scaffold0123 (502-604)||(29260-29362)
[»] scaffold0002 (1 HSPs)
scaffold0002 (502-604)||(492335-492437)


Alignment Details
Target: scaffold0005 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 7 - 797
Target Start/End: Original strand, 54087 - 54864
Alignment:
Q  7 agccttaacaaagcatcaaaagattttggcaatagataccaatatcattcaatggcagtgatgtacccaaaatcagtttctgatattgcaaccacaataa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54087 agccttaacaaagcatcaaaagattttggcaatagataccaatatcatccaatggcagtgatgtacccaaaatcagtttctgatattgcaacaacaataa 54186  T
Q  107 aacatatatggcatatgggacatagctctcatctcactgttgcagcaagaggacatgggcattcacttcaaggacaatcacaaactcatggaggaattgt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54187 aacatatatggcatatgggacatagctctcatctcactgttgcagcaagaggacatggacattcacttcaaggacaatcacaaactcatggaggaattgt 54286  T
Q  207 gatcaaaatggaatcactcaaagtacctgaaatgcaaatccatgttgggaattcttctccatatgtggatgtctctggtggtgaattgtggataaacatc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54287 gatcaaaatggaatcactcaaagtacctgaaatgcaaatccatgttgggaattcttctccatatgtggatgtctctggtggtgaattgtggataaacatc 54386  T
Q  307 ttgcatgagactttgaaatatgggttggcaccaagatcatggacagattatttgcatctaacagttggtggtactctctccaatgctggtgttagtggac 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54387 ttgcatgagactttgaaatatgggttggcaccaagatcatggacagattatttgcatctaacagttggtggtactctgtccaatgctggtgttagtggac 54486  T
Q  407 aagcatttaagcatggtcctcagatcagtaatgttcaacagcttgagattgttacgggtttgtatataatcttcttttgaatccctacaattctttttac 506  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  54487 aagcatttaagcatggtcctcagatcagtaatgttcagcagcttgagattgttacaggtttgtatataatcttcttttgaatccctacgattctttttac 54586  T
Q  507 aagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaattcaatt 606  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||  || |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  54587 aagaaacaatttattttttaaatacattgaataaattatgtatccaatttagattttataccatatacttaaattattcaatgtatctgaaaagtcaatt 54686  T
Q  607 atttccagtaaataagaccgtaggaagtattttttaagtttcttttacgggaaaaaatttagtacgtgaattatgttagttttcaatgtttgaatcttca 706  Q
    |||||| ||||||| || || |||||||||||||||||||||||||||  ||||||||||||         |||| ||||||| |||||||||||||| |    
T  54687 atttcctgtaaataggatcggaggaagtattttttaagtttcttttac-agaaaaaatttag---------tatggtagtttttaatgtttgaatcttta 54776  T
Q  707 gaattctctctgatggcccttaactcaccgcaatcgatttgtgttgcttaaaactattactccatccatcccaaattaagtgagttatttg 797  Q
    ||||||||||||||| ||||||||||||  ||| || ||||| ||| || ||||||||||||| ||  ||| |||||||||||| ||||||    
T  54777 gaattctctctgatgtcccttaactcac--caaacgctttgt-ttgttttaaactattactccctcggtcctaaattaagtgagctatttg 54864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 604; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 7 - 797
Target Start/End: Complemental strand, 14785643 - 14784866
Alignment:
Q  7 agccttaacaaagcatcaaaagattttggcaatagataccaatatcattcaatggcagtgatgtacccaaaatcagtttctgatattgcaaccacaataa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14785643 agccttaacaaagcatcaaaagattttggcaatagataccaatatcatccaatggcagtgatgtacccaaaatcagtttctgatattgcaacaacaataa 14785544  T
Q  107 aacatatatggcatatgggacatagctctcatctcactgttgcagcaagaggacatgggcattcacttcaaggacaatcacaaactcatggaggaattgt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14785543 aacatatatggcatatgggacatagctctcatctcactgttgcagcaagaggacatggacattcacttcaaggacaatcacaaactcatggaggaattgt 14785444  T
Q  207 gatcaaaatggaatcactcaaagtacctgaaatgcaaatccatgttgggaattcttctccatatgtggatgtctctggtggtgaattgtggataaacatc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14785443 gatcaaaatggaatcactcaaagtacctgaaatgcaaatccatgttgggaattcttctccatatgtggatgtctctggtggtgaattgtggataaacatc 14785344  T
Q  307 ttgcatgagactttgaaatatgggttggcaccaagatcatggacagattatttgcatctaacagttggtggtactctctccaatgctggtgttagtggac 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14785343 ttgcatgagactttgaaatatgggttggcaccaagatcatggacagattatttgcatctaacagttggtggtactctgtccaatgctggtgttagtggac 14785244  T
Q  407 aagcatttaagcatggtcctcagatcagtaatgttcaacagcttgagattgttacgggtttgtatataatcttcttttgaatccctacaattctttttac 506  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  14785243 aagcatttaagcatggtcctcagatcagtaatgttcagcagcttgagattgttacaggtttgtatataatcttcttttgaatccctacgattctttttac 14785144  T
Q  507 aagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaattcaatt 606  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||  || |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  14785143 aagaaacaatttattttttaaatacattgaataaattatgtatccaatttagattttataccatatacttaaattattcaatgtatctgaaaagtcaatt 14785044  T
Q  607 atttccagtaaataagaccgtaggaagtattttttaagtttcttttacgggaaaaaatttagtacgtgaattatgttagttttcaatgtttgaatcttca 706  Q
    |||||| ||||||| || || |||||||||||||||||||||||||||  ||||||||||||         |||| ||||||| |||||||||||||| |    
T  14785043 atttcctgtaaataggatcggaggaagtattttttaagtttcttttac-agaaaaaatttag---------tatggtagtttttaatgtttgaatcttta 14784954  T
Q  707 gaattctctctgatggcccttaactcaccgcaatcgatttgtgttgcttaaaactattactccatccatcccaaattaagtgagttatttg 797  Q
    ||||||||||||||| ||||||||||||  ||| || ||||| ||| || ||||||||||||| ||  ||| |||||||||||| ||||||    
T  14784953 gaattctctctgatgtcccttaactcac--caaacgctttgt-ttgttttaaactattactccctcggtcctaaattaagtgagctatttg 14784866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 499 - 606
Target Start/End: Original strand, 4698636 - 4698743
Alignment:
Q  499 ctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaa 598  Q
    ||||||||||||||||||| | |||||| |||||||||| || ||||||||||| | |||||| || |||| |||| ||||||||||||||||||| |||    
T  4698636 ctttttacaagaaacaattgaatttttagatacattgaataatttatgtatctggtttagattctagaccatatacataaattattcaatgtatctaaaa 4698735  T
Q  599 attcaatt 606  Q
    | ||||||    
T  4698736 aatcaatt 4698743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 497 - 587
Target Start/End: Complemental strand, 31240979 - 31240889
Alignment:
Q  497 ttctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaa 587  Q
    ||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |  | ||||||||| ||||||||| ||||||||||||    
T  31240979 ttctttttacaagaaacaattaactttttaaatacattgaataaattatgtatttagtttagattttaaaccagatacataaattattcaa 31240889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 502 - 611
Target Start/End: Complemental strand, 4698755 - 4698646
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||| |||||||| | |||||| |||||||||| || |||||||| || | |||| | || ||||||||| ||||||||||||||||||| ||||||    
T  4698755 tttacaataaacaattgattttttagatacattgaataatttatgtatatggtctagaatctaaaccagatacataaattattcaatgtatctaaaaatt 4698656  T
Q  602 caattatttc 611  Q
    ||||| ||||    
T  4698655 caattgtttc 4698646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 502 - 638
Target Start/End: Complemental strand, 55292244 - 55292108
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| |||| ||| || |  || |||||  || |||||||||||||||| |||| |    
T  55292244 tttacaagaaacaatttattttttagatacattaaataatttatgtatttgatttaggttctcgactagatatatacattattcaatgtatctaaaaagt 55292145  T
Q  602 caattatttccagtaaataagaccgtaggaagtattt 638  Q
    ||| | | ||  ||||||| ||||| |||||||||||    
T  55292144 caaatttctcttgtaaataggaccggaggaagtattt 55292108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 502 - 636
Target Start/End: Original strand, 19485588 - 19485722
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||||||||||||||||| |||||||||||||| || || |||||||| || | ||| || |  |  |||||| || |||||||||||||||| |||| |    
T  19485588 tttacaagaaacaatttactttttaaatacattaaataatttatgtatttggtttaggttcttgattagatacatacattattcaatgtatctaaaaaat 19485687  T
Q  602 caattatttccagtaaataagaccgtaggaagtat 636  Q
    ||||| | ||  ||||||| ||||| ||| |||||    
T  19485688 caattttctcttgtaaataggaccggagggagtat 19485722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 502 - 635
Target Start/End: Complemental strand, 38688043 - 38687910
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  38688043 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacgtacattattcaatgtatctaaaaagt 38687944  T
Q  602 caattatttccagtaaataagaccgtaggaagta 635  Q
    ||| | | ||  ||||||||||||| ||| ||||    
T  38687943 caactttctcttgtaaataagaccggagggagta 38687910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 637
Target Start/End: Complemental strand, 4758909 - 4758774
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| |||| ||| || |  || |||||| || |||||||||||||||| |||| |    
T  4758909 tttacaagagacaatttactttttagatacattaaataatttatgtatttgatttaggttcttaactagatacatacattattcaatgtatctaaaaagt 4758810  T
Q  602 caattatttccagtaaataagaccgtaggaagtatt 637  Q
    ||| | | ||  ||||||| ||||| ||| ||||||    
T  4758809 caactgtctcttgtaaataggaccggagggagtatt 4758774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 592
Target Start/End: Complemental strand, 18135445 - 18135355
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtat 592  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| |||| ||| || |  || |||||| || ||||||||||||||    
T  18135445 tttacaagagacaatttactttttagatacattgaataatttatgtatttgatttaggttcttgactagatacatacattattcaatgtat 18135355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 31854511 - 31854409
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  31854511 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttattgactagatacatacattattcaatgtatctaaaaagt 31854412  T
Q  602 caa 604  Q
    |||    
T  31854411 caa 31854409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 52536083 - 52535986
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 599  Q
    ||||||||| |||||| | |||||| ||||||| || || |||||||| |||| ||| ||||  || |||||| || |||||||||||||||| ||||    
T  52536083 tttacaagatacaattaactttttatatacattaaataatttatgtatttgatttaggtttttaactagatacatacattattcaatgtatctaaaaa 52535986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 637
Target Start/End: Original strand, 36099503 - 36099638
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  36099503 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaaat 36099602  T
Q  602 caattatttccagtaaataagaccgtaggaagtatt 637  Q
    ||| | | ||  ||||||| ||||| ||| ||||||    
T  36099603 caactgtctcttgtaaataggaccggagggagtatt 36099638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 2385327 - 2385225
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| |  | |||||| |  || |||||| || |||||||||||||||| |||| |    
T  2385327 tttacaagagacaatttaatttttagatacattaaataatttatgtattttgtttagattcttgactagatacatacattattcaatgtatctaaaaagt 2385228  T
Q  602 caa 604  Q
    |||    
T  2385227 caa 2385225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 592
Target Start/End: Complemental strand, 2411972 - 2411882
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtat 592  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| |  | |||||| |  || |||||| || ||||||||||||||    
T  2411972 tttacaagaaacaatttactttttagatacattaaataatttatgtatttagtttagattcttgactagatacatacattattcaatgtat 2411882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 592
Target Start/End: Complemental strand, 18430387 - 18430297
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtat 592  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| |||| ||| || |  || |||||| || ||||||||||||||    
T  18430387 tttacaagagacaatttactttttagatacattaaataatttatgtatttgatttaggttcttgactagatacatacattattcaatgtat 18430297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 604
Target Start/End: Original strand, 31227287 - 31227389
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||| ||||||||| |||| |    
T  31227287 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattatttaatgtatctaaaaagt 31227386  T
Q  602 caa 604  Q
    |||    
T  31227387 caa 31227389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 346 - 408
Target Start/End: Complemental strand, 52454638 - 52454576
Alignment:
Q  346 tggacagattatttgcatctaacagttggtggtactctctccaatgctggtgttagtggacaa 408  Q
    ||||| ||||||||| || || | |||||||| |||||||| ||||||||| |||||||||||    
T  52454638 tggactgattatttgtatttatcggttggtggaactctctctaatgctggtattagtggacaa 52454576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 4e-62; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 25 - 466
Target Start/End: Complemental strand, 13415759 - 13415321
Alignment:
Q  25 aaagattttggcaatagataccaatatcattcaatggcagtgatgtacccaaaatcagtttctgatattgcaaccacaataaaacatatatggcatatgg 124  Q
    |||||||||||||| || ||||||| |||| | ||| ||||  |  | ||||||||||||||||||||||||   || ||||| ||||||||| || | |    
T  13415759 aaagattttggcaacaggtaccaatctcatcctatgacagtactacatccaaaatcagtttctgatattgcagttactataaagcatatatggaatttag 13415660  T
Q  125 gacatagctctcatctcactgttgcagcaagaggacatgggcattcacttcaaggacaatcacaaactcatggaggaattgtgatcaaaatggaatcact 224  Q
    | |  || ||||| || ||||||||||| ||||||||||| || ||||||||||| ||| ||||| || | |  ||| |||||||||| |||||||||||    
T  13415659 gtccaagttctcacctaactgttgcagctagaggacatggccactcacttcaagggcaagcacaagctgaagagggagttgtgatcaatatggaatcact 13415560  T
Q  225 caaagtacctgaaatgcaaatccatgttgg-gaattcttctccatatgtggatgtctctggtggtgaattgtggataaacatcttgcatgagactttgaa 323  Q
     || ||    |||||  |  |  ||| ||| |||||    ||| ||||||||||| || || |||||||| |||||||| || ||||||||||| |||||    
T  13415559 gaatgttgaagaaattaaggtgtatggtggagaatt----tccttatgtggatgtgtcaggaggtgaattatggataaagattttgcatgagacattgaa 13415464  T
Q  324 atatgggttggcaccaagatcatggacagattatttgcatctaacagttggtggtactctctccaatgctggtgttagtggacaagcatttaagcatggt 423  Q
     ||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| || || |||| |||||||    
T  13415463 gtatggtttggcaccaagatcttggacagattatttgcatctgacagttggtggtactttatccaatgctggtgttagtggtcaggcttttaggcatggt 13415364  T
Q  424 cctcagatcagtaatgttcaacagcttgagattgttacgggtt 466  Q
    || |||||||||||||||||  || | ||||||||||| ||||    
T  13415363 ccacagatcagtaatgttcagaagatggagattgttacaggtt 13415321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 502 - 637
Target Start/End: Complemental strand, 8243814 - 8243679
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | |||||| |  || |||||| || |||||||||||||||| |||| |    
T  8243814 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttagattcttgactagatacatacattattcaatgtatctaaaaagt 8243715  T
Q  602 caattatttccagtaaataagaccgtaggaagtatt 637  Q
    ||||| | ||  ||||||||||||| | ||||||||    
T  8243714 caattgtctcttgtaaataagaccggatgaagtatt 8243679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 502 - 636
Target Start/End: Original strand, 10049684 - 10049818
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  10049684 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 10049783  T
Q  602 caattatttccagtaaataagaccgtaggaagtat 636  Q
    ||||| | ||  ||||||| ||||| ||| |||||    
T  10049784 caattgtctcttgtaaataggaccggagggagtat 10049818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 488 - 641
Target Start/End: Original strand, 23825151 - 23825304
Alignment:
Q  488 tccctacaattctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaa 587  Q
    ||||| |||| || |||||||||||||||||| |||||| ||||||  || || |||||||| || | |||||| |  || |||||| || |||||||||    
T  23825151 tccctccaatcctatttacaagaaacaatttactttttagatacatcaaataatttatgtatttggtttagattcttgactagatacatacattattcaa 23825250  T
Q  588 tgtatctgaaaattcaattatttccagtaaataagaccgtaggaagtatttttt 641  Q
    ||||||| |||| |||| | | ||  ||||||| || || ||| ||||||||||    
T  23825251 tgtatctaaaaagtcaactttctcttgtaaatatgatcggagggagtatttttt 23825304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 606
Target Start/End: Original strand, 22003812 - 22003916
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||| | |||||| |||||||||| || |||| ||| |  | |||||| | ||| |||||| ||||||||||||||||||| |||| |    
T  22003812 tttacaagagacaattaattttttagatacattgaataatttatatatttagtttagattctttactagatacataaattattcaatgtatctaaaaagt 22003911  T
Q  602 caatt 606  Q
    |||||    
T  22003912 caatt 22003916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 606
Target Start/End: Original strand, 22011329 - 22011433
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||| | |||||| |||||||||| || |||| ||| |  | |||||| | ||| |||||| ||||||||||||||||||| |||| |    
T  22011329 tttacaagagacaattaattttttagatacattgaataatttatatatttagtttagattctttactagatacataaattattcaatgtatctaaaaagt 22011428  T
Q  602 caatt 606  Q
    |||||    
T  22011429 caatt 22011433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 6087033 - 6086931
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  6087033 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 6086934  T
Q  602 caa 604  Q
    |||    
T  6086933 caa 6086931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 25846643 - 25846541
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||||||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  25846643 tttacaagagacaatttactttttaaatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaaat 25846544  T
Q  602 caa 604  Q
    |||    
T  25846543 caa 25846541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 52114156 - 52114054
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || | ||| |||||| || |||||||||||||||| |||| |    
T  52114156 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttctttactagatacatacattattcaatgtatctaaaaaat 52114057  T
Q  602 caa 604  Q
    |||    
T  52114056 caa 52114054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 637
Target Start/End: Original strand, 8243698 - 8243833
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||| | |||||| |||||||||| ||  |||||||||  |  ||| | || |||| |||| ||||||||||||||||||| |||| |    
T  8243698 tttacaagagacaattgactttttagatacattgaataatgtatgtatctagtcaagaatctaaaccaaatacataaattattcaatgtatctaaaaagt 8243797  T
Q  602 caattatttccagtaaataagaccgtaggaagtatt 637  Q
     |||| | ||  ||||||| ||||| ||| ||||||    
T  8243798 aaattgtctcttgtaaataggaccggaggtagtatt 8243833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 641
Target Start/End: Complemental strand, 9465203 - 9465064
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||  || || |||||||| |||| ||| || |  || |||||| || |||||||||||||||| |||| |    
T  9465203 tttacaagagacaatttactttttagatacataaaataatttatgtatttgatttaggttcttgactagatacatacattattcaatgtatctaaaaagt 9465104  T
Q  602 caattatttccagtaaataagaccgtaggaagtatttttt 641  Q
    ||| | | ||  ||||||| ||||| ||  ||||||||||    
T  9465103 caactttatcttgtaaataggaccggagagagtatttttt 9465064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 637
Target Start/End: Original strand, 26999037 - 26999172
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  26999037 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 26999136  T
Q  602 caattatttccagtaaataagaccgtaggaagtatt 637  Q
    ||| | | ||  ||||||| ||||| ||| ||||||    
T  26999137 caaatgtctcttgtaaataggaccggagggagtatt 26999172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 599
Target Start/End: Original strand, 55139187 - 55139286
Alignment:
Q  500 tttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 599  Q
    ||||||| |||||||||| | |||||| |||||||||| || |||||||| || | || ||| |  |||| |||| ||||||||||||| ||||| ||||    
T  55139187 tttttaccagaaacaattgactttttagatacattgaataatttatgtatttgttttaaattcttgaccaaatacataaattattcaatatatctaaaaa 55139286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 335507 - 335405
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||| |||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  335507 tttacaaaaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 335408  T
Q  602 caa 604  Q
    |||    
T  335407 caa 335405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 604
Target Start/End: Original strand, 14768114 - 14768216
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  14768114 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatatattattcaatgtatctaaaaaat 14768213  T
Q  602 caa 604  Q
    |||    
T  14768214 caa 14768216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 636
Target Start/End: Complemental strand, 18765390 - 18765256
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||||||||||||||||| |||||| || |||| || || |||||||| || | ||| || |  || | |||| || |||||||||||||||| |||| |    
T  18765390 tttacaagaaacaatttactttttagatgcattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaatgtatctaaaaaat 18765291  T
Q  602 caattatttccagtaaataagaccgtaggaagtat 636  Q
    ||| | | ||  ||||||| ||||| |||||||||    
T  18765290 caactttctcttgtaaatatgaccggaggaagtat 18765256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 643
Target Start/End: Original strand, 9440144 - 9440285
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| ||| || | |||||| |||||||||| ||  |||||||||  |  |||  ||| |||| |||| ||||||||||||||||||| |||| |    
T  9440144 tttacaagagacagttgactttttagatacattgaataatgtatgtatctagtcaagaacttaaaccaaatacataaattattcaatgtatctaaaaagt 9440243  T
Q  602 caattatttccagtaaataagaccgtaggaagtattttttaa 643  Q
     |||| | ||  ||||||| ||||| ||| |||| |||||||    
T  9440244 aaattgtctcttgtaaataggaccggaggtagtaatttttaa 9440285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 607
Target Start/End: Original strand, 44593217 - 44593322
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||||| | || | ||||||||||||||||| ||  ||||||||| ||  | |  ||| |||| |||| ||||||||| ||||||||| ||||||    
T  44593217 tttacaagaaaaagttgactttttaaatacattgaataatatatgtatctaatcaaaaacttaaaccaaatacataaattatttaatgtatctaaaaatt 44593316  T
Q  602 caatta 607  Q
     |||||    
T  44593317 aaatta 44593322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 611
Target Start/End: Complemental strand, 55139305 - 55139196
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||| ||||||||||  | |||||| ||| |||||| || |||||||| || |  ||| |||| | || |||| ||||||||||||||||||| |||| |    
T  55139305 tttaaaagaaacaatcaactttttagatatattgaataatttatgtatttggtcaagaatttaaaacaaatacataaattattcaatgtatctaaaaagt 55139206  T
Q  602 caattatttc 611  Q
    ||||| ||||    
T  55139205 caattgtttc 55139196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 499 - 620
Target Start/End: Original strand, 26563934 - 26564055
Alignment:
Q  499 ctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaa 598  Q
    ||||||||||||| ||||| | |||||| ||| |||||| ||||||||||| || | |||||| || ||||||||| |||||||||||||||||||||||    
T  26563934 ctttttacaagaagcaattaactttttagatatattgaataaattatgtatttggtttagattctagaccagatacgtaaattattcaatgtatctgaaa 26564033  T
Q  599 attcaattatttccagtaaata 620  Q
    | |||||| ||||  |||||||    
T  26564034 agtcaattgtttcttgtaaata 26564055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 274 - 431
Target Start/End: Original strand, 35830039 - 35830196
Alignment:
Q  274 gatgtctctggtggtgaattgtggataaacatcttgcatgagactttgaaatatgggttggcaccaagatcatggacagattatttgcatctaacagttg 373  Q
    |||||||| |||||||| ||||||||||||||  ||||||||||| | ||| |||| |||||||||| ||| |||||||| ||| | ||||| || ||||    
T  35830039 gatgtctcaggtggtgagttgtggataaacattctgcatgagactctaaaacatggattggcaccaaaatcttggacagactatcttcatctcactgttg 35830138  T
Q  374 gtggtactctctccaatgctggtgttagtggacaagcatttaagcatggtcctcagat 431  Q
    | || ||||| || ||||||||  | ||||||||||| |||| |||||| ||||||||    
T  35830139 gaggcactctttcgaatgctggaataagtggacaagcttttaggcatggacctcagat 35830196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 502 - 638
Target Start/End: Original strand, 7107646 - 7107782
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||| | |||||| ||||||| || || |||||||| || | ||||||||  || |||||| ||||||||||||||||||| |||| |    
T  7107646 tttacaagagacaattaattttttagatacattaaataatttatgtatttggtttagatttttgactagatacataaattattcaatgtatctaaaaagt 7107745  T
Q  602 caattatttccagtaaataagaccgtaggaagtattt 638  Q
    ||| | | ||  ||||||| ||||| ||| |||||||    
T  7107746 caactttctcttgtaaataggaccggaggtagtattt 7107782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 637
Target Start/End: Original strand, 12763245 - 12763380
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  12763245 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 12763344  T
Q  602 caattatttccagtaaataagaccgtaggaagtatt 637  Q
    ||||| | ||  ||||||||||||| ||| ||||||    
T  12763345 caattttctcttgtaaataagaccggagggagtatt 12763380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 7463465 - 7463562
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 599  Q
    |||||||||||||||||| ||||||||||||||  | || |||||||| || | |||||| |  |  |||||| || |||||||||||||||| ||||    
T  7463465 tttacaagaaacaatttactttttaaatacattacataatttatgtatttggtttagattcttgattagatacatacattattcaatgtatctaaaaa 7463562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 502 - 638
Target Start/End: Complemental strand, 41850728 - 41850592
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||| |||||||| |||| |||||  || ||||| | |||| |||||| || | || ||||||||||| |||| | |||||||||||| |||| |||| |    
T  41850728 tttataagaaacattttacttttttgattcattgcataaatgatgtatttgctctatattttataccaaatacattaattattcaatgaatctaaaaaat 41850629  T
Q  602 caattatttccagtaaataagaccgtaggaagtattt 638  Q
     || | ||||   |||||||||||||||| |||||||    
T  41850628 taactttttcttataaataagaccgtagggagtattt 41850592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 496 - 604
Target Start/End: Complemental strand, 46449916 - 46449808
Alignment:
Q  496 attctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctg 595  Q
    ||||| ||||||||| |||||| | |||||||||||||| || || |||| ||| || | ||||||||  |  | |||| |||||||||||||||||||     
T  46449916 attctatttacaagagacaattaattttttaaatacattaaataatttatatatttggtttagatttttaattaaatacataaattattcaatgtatcta 46449817  T
Q  596 aaaattcaa 604  Q
    |||| ||||    
T  46449816 aaaagtcaa 46449808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 26564053 - 26563956
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 599  Q
    |||||||||||||||| | |||| | |||||||||| || ||| ||||||| | |||| | || |||| |||| ||| ||||||||| ||||| ||||    
T  26564053 tttacaagaaacaattgacttttcagatacattgaataatttacgtatctggtctagaatctaaaccaaatacataatttattcaatatatctaaaaa 26563956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 639
Target Start/End: Original strand, 30866261 - 30866398
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||| |||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||| ||||||||| |||| |    
T  30866261 tttaaaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattgaatgtatctaaaaaat 30866360  T
Q  602 caattatttccagtaaataagaccgtaggaagtatttt 639  Q
    ||| | | ||  ||||||||||||| ||| ||||||||    
T  30866361 caactttctcttgtaaataagaccggagggagtatttt 30866398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 521 - 610
Target Start/End: Complemental strand, 24255984 - 24255895
Alignment:
Q  521 tttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaattcaattattt 610  Q
    |||||||||| |||||| ||| ||||||| || | |||||| || ||||||||| ||||||||||||||||| |||||| ||||||||||    
T  24255984 tttttaaataaattgaataaagtatgtatttggtttagattctagaccagatacgtaaattattcaatgtatatgaaaaatcaattattt 24255895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 642
Target Start/End: Complemental strand, 2229202 - 2229062
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||| ||||||| |||| |    
T  2229202 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcattgtatctaaaaagt 2229103  T
Q  602 caattatttccagtaaataagaccgtaggaagtatttttta 642  Q
    ||| | | ||  ||||||| ||||| ||| |||||||||||    
T  2229102 caactgtctcttgtaaataggaccggagggagtatttttta 2229062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 636
Target Start/End: Original strand, 41915610 - 41915744
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||| |||| |||||||| |||||| ||||||| || || |||||||| || | |||||| |  || |||||| || |||||||||||||||| |||| |    
T  41915610 tttataagagacaatttaatttttagatacattaaataatttatgtatttggtttagattattgactagatacatacattattcaatgtatctaaaaagt 41915709  T
Q  602 caattatttccagtaaataagaccgtaggaagtat 636  Q
    ||||| | ||  ||||||| ||||| ||| |||||    
T  41915710 caattttctcttgtaaataggaccggagggagtat 41915744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 604
Target Start/End: Original strand, 8242240 - 8242341
Alignment:
Q  503 ttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaattc 602  Q
    |||||||| |||||||| |||||||||||||| ||  | |||||||| |||| ||| || |  || |||||| || |||||||||||||||| |||| ||    
T  8242240 ttacaagagacaatttactttttaaatacattaaatgatttatgtatttgatttaggttcttgactagatacatacattattcaatgtatctaaaaaatc 8242339  T
Q  603 aa 604  Q
    ||    
T  8242340 aa 8242341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 637
Target Start/End: Original strand, 43135070 - 43135195
Alignment:
Q  512 acaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaattcaattatttc 611  Q
    |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |||| | | ||    
T  43135070 acaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaactgtctc 43135169  T
Q  612 cagtaaataagaccgtaggaagtatt 637  Q
      ||||||| ||||| ||||||||||    
T  43135170 ttgtaaataggaccggaggaagtatt 43135195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 593
Target Start/End: Original strand, 22781898 - 22781989
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatc 593  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||    
T  22781898 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatc 22781989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 604
Target Start/End: Original strand, 2339306 - 2339408
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  2339306 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 2339405  T
Q  602 caa 604  Q
    |||    
T  2339406 caa 2339408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 504 - 600
Target Start/End: Original strand, 22857822 - 22857918
Alignment:
Q  504 tacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaat 600  Q
    |||||||||||||| | |||||| |||||||||| || ||||||||||||| |||| | || |||| |||| ||||||||||| ||||||| |||||    
T  22857822 tacaagaaacaattgactttttagatacattgaataatttatgtatctgatctagaatctaaaccaaatacataaattattcattgtatctaaaaat 22857918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 637
Target Start/End: Complemental strand, 44737414 - 44737280
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | |||||| |  || |||||| || |||||||||||||||| |||| |    
T  44737414 tttacaagagacaatttactttttagatacattgaataatttatgtatttggt-tagattcttaactagatacatacattattcaatgtatctaaaaagt 44737316  T
Q  602 caattatttccagtaaataagaccgtaggaagtatt 637  Q
    ||||| | ||  ||||||||||||| ||| ||||||    
T  44737315 caattttctcttgtaaataagaccggagggagtatt 44737280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 488 - 604
Target Start/End: Complemental strand, 45065726 - 45065610
Alignment:
Q  488 tccctacaattctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaa 587  Q
    ||||| || |||| ||||||||| |||||||| |||||| ||||||| || || |||||||| | || |||||| || || |||||| || |||||||||    
T  45065726 tccctccagttctatttacaagagacaatttactttttagatacattaaataatttatgtatttaatttagattctagactagatacatacattattcaa 45065627  T
Q  588 tgtatctgaaaattcaa 604  Q
    ||||||| |||| ||||    
T  45065626 tgtatctaaaaagtcaa 45065610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 502 - 639
Target Start/End: Complemental strand, 7765926 - 7765789
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||| |||| |||||||| |||||| ||||||| || ||||||||||| |||| ||| || |  || |||||| || |||||||||||||||| |||| |    
T  7765926 tttataagagacaatttactttttagatacattaaataaattatgtatttgatttaggttcttgactagatacatacattattcaatgtatctaaaaagt 7765827  T
Q  602 caattatttccagtaaataagaccgtaggaagtatttt 639  Q
    ||| | | ||  ||||||| ||||| ||| ||||||||    
T  7765826 caactttctcttgtaaataggaccggagggagtatttt 7765789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 611
Target Start/End: Complemental strand, 22857938 - 22857827
Alignment:
Q  499 ctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaa 598  Q
    ||||| ||| |||||| |||| |||||| ||||| |||| || |||||||| || | |||||| || | ||||||| ||||||||||||||||||| |||    
T  22857938 cttttcacaggaaacacttta-tttttagatacaatgaataatttatgtatttggtttagattctagatcagatacataaattattcaatgtatctaaaa 22857840  T
Q  599 attcaattatttc 611  Q
    | |||||| ||||    
T  22857839 agtcaattgtttc 22857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 16241399 - 16241297
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  16241399 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 16241300  T
Q  602 caa 604  Q
    |||    
T  16241299 caa 16241297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 623
Target Start/End: Complemental strand, 27182143 - 27182086
Alignment:
Q  566 accagatacttaaattattcaatgtatctgaaaattcaattatttccagtaaataaga 623  Q
    |||| |||| |||||||||||||||||||||||| |||||| ||||  ||||||||||    
T  27182143 accaaatacataaattattcaatgtatctgaaaaatcaattgtttcttgtaaataaga 27182086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 623
Target Start/End: Complemental strand, 27831685 - 27831628
Alignment:
Q  566 accagatacttaaattattcaatgtatctgaaaattcaattatttccagtaaataaga 623  Q
    |||| |||| |||||||||||||||||||||||| |||||| ||||  ||||||||||    
T  27831685 accaaatacataaattattcaatgtatctgaaaaatcaattgtttcttgtaaataaga 27831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 502 - 606
Target Start/End: Original strand, 20427017 - 20427121
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||| ||| || || |||||||| |||| ||| || |  || |||||| || |||||||||||||||| |||| |    
T  20427017 tttacaagagacaatttactttttagatagattaaataatttatgtatttgatttaggttcttgactagatacatacattattcaatgtatctaaaaagt 20427116  T
Q  602 caatt 606  Q
    |||||    
T  20427117 caatt 20427121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 42263602 - 42263500
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || | |||| || |||||||||||||||| |||| |    
T  42263602 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaatgtatctaaaaaat 42263503  T
Q  602 caa 604  Q
    |||    
T  42263502 caa 42263500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 512 - 638
Target Start/End: Original strand, 42341644 - 42341770
Alignment:
Q  512 acaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaattcaattatttc 611  Q
    |||||||| |||||||||||||| || || |||||||| || | |||||| |  |  |||||| || |||||||||||||| | |||| |||||| | ||    
T  42341644 acaatttactttttaaatacattaaataatttatgtatttggtttagattcttgattagatacatacattattcaatgtatttaaaaaatcaattttctc 42341743  T
Q  612 cagtaaataagaccgtaggaagtattt 638  Q
      ||||||| ||||| | |||||||||    
T  42341744 ttgtaaataggaccggatgaagtattt 42341770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 43658057 - 43657955
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| | |||||| |||||| ||||||| || || |||||||| || | ||| ||||  || |||||| || |||||||||||||||| |||| |    
T  43658057 tttacaagagataatttactttttagatacattaaataatttatgtatttggtttaggtttttgactagatacatacattattcaatgtatctaaaaagt 43657958  T
Q  602 caa 604  Q
    |||    
T  43657957 caa 43657955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 38598472 - 38598569
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 599  Q
    ||||||||| |||||||| |||||| ||| ||| || || |||||||| || | ||| || |  ||||||||| || |||||||||||||||| ||||    
T  38598472 tttacaagagacaatttactttttatatatattaaataatttatgtatttggtttaggttcttgaccagatacatatattattcaatgtatctaaaaa 38598569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 502 - 626
Target Start/End: Original strand, 33325349 - 33325473
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || ||||||||||| | ||||||||  || |||||| || |||||||||||||||| |||| |    
T  33325349 tttacaagagacaatttattttttagatacattaaataatttatgtatctggtttagatttttgactagatacatacattattcaatgtatctaaaaagt 33325448  T
Q  602 caattatttccagtaaataagaccg 626  Q
    ||| | ||||  ||||||| |||||    
T  33325449 caactttttcttgtaaataggaccg 33325473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 502 - 636
Target Start/End: Complemental strand, 10065387 - 10065253
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||| |||||||||| |||||| ||||||| || || |||||||| |||| ||| || |  || |||||| || |||||||||||||||| |||| |    
T  10065387 tttacaaaaaacaatttactttttagatacattaaataatttatgtatttgatttaggttcttgacgagatacatacattattcaatgtatctaaaaaat 10065288  T
Q  602 caattatttccagtaaataagaccgtaggaagtat 636  Q
    ||||| | ||  ||||||| ||||| ||| |||||    
T  10065287 caattttctcttgtaaataggaccggagggagtat 10065253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 502 - 635
Target Start/End: Original strand, 28989288 - 28989421
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | |||||| |  || |||||| || |||||||||||||||| | || |    
T  28989288 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttagattcttgactagatacgtacattattcaatgtatctaataagt 28989387  T
Q  602 caattatttccagtaaataagaccgtaggaagta 635  Q
    ||| | | ||  ||||||||||||| ||| ||||    
T  28989388 caactttctcttgtaaataagaccggagggagta 28989421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 604
Target Start/End: Original strand, 14281606 - 14281708
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  14281606 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 14281705  T
Q  602 caa 604  Q
    |||    
T  14281706 caa 14281708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 502 - 606
Target Start/End: Original strand, 23398096 - 23398200
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||| ||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  23398096 tttacaagagacaacttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 23398195  T
Q  602 caatt 606  Q
    |||||    
T  23398196 caatt 23398200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 592
Target Start/End: Original strand, 29312455 - 29312545
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtat 592  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| |||| ||| || |  || |||||| || ||||||||||||||    
T  29312455 tttacaagagacaatttactttttagatacattaaataatttatgtatttgatttaggttcttgactagatacgtacattattcaatgtat 29312545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 637
Target Start/End: Original strand, 7405460 - 7405595
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  7405460 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 7405559  T
Q  602 caattatttccagtaaataagaccgtaggaagtatt 637  Q
    ||||| | ||  ||||||||||||| ||| ||||||    
T  7405560 caattttctcttgtaaataagaccggagggagtatt 7405595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 502 - 594
Target Start/End: Complemental strand, 6045813 - 6045721
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatct 594  Q
    ||||||||| |||||||| |||||| ||| ||| || || |||||||| |||| |||||| |  || |||||| || ||||||||||||||||    
T  6045813 tttacaagagacaatttactttttagatagattaaataatttatgtatttgatttagattcttgactagatacatagattattcaatgtatct 6045721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 637
Target Start/End: Complemental strand, 31971162 - 31971027
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| ||||||||  ||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  31971162 tttacaagagacaatttacattttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 31971063  T
Q  602 caattatttccagtaaataagaccgtaggaagtatt 637  Q
    ||| | | ||  ||||||||||||| ||| ||||||    
T  31971062 caactttctcttgtaaataagaccggagggagtatt 31971027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 390937 - 390835
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  390937 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaaat 390838  T
Q  602 caa 604  Q
    |||    
T  390837 caa 390835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 6047928 - 6047831
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 599  Q
    ||||||||| | |||||| |||||| ||||||| || || |||||||| |||| ||| || |  || |||||| || |||||||||||||||| ||||    
T  6047928 tttacaagagataatttactttttagatacattaaataatttatgtatttgatttaggttcttgactagatacatacattattcaatgtatctaaaaa 6047831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 6801683 - 6801586
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 599  Q
    |||||||||||||||||| |||||| ||||||| || || | |||||| || | ||| || |  || |||||| || |||||||||||||||| ||||    
T  6801683 tttacaagaaacaatttactttttagatacattaaataattcatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaa 6801586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 641
Target Start/End: Original strand, 29374186 - 29374325
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  29374186 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgacgagatacatacattattcaatgtatctaaaaagt 29374285  T
Q  602 caattatttccagtaaataagaccgtaggaagtatttttt 641  Q
    ||| | | ||  ||||||| ||||| ||| ||||||||||    
T  29374286 caactgtctcttgtaaataggaccggagggagtatttttt 29374325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 497 - 592
Target Start/End: Complemental strand, 38393892 - 38393797
Alignment:
Q  497 ttctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtat 592  Q
    |||| |||||||||||||||| | |||||||||| |||||| || ||||| || |||| |||||| |  || | |||| |||||||||||||||||    
T  38393892 ttctatttacaagaaacaattgactttttaaatatattgaataatttatgaatttgatttagattcttgactatatacataaattattcaatgtat 38393797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 604
Target Start/End: Original strand, 6910728 - 6910830
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| |||| |||||| |  || |||| | || |||||||||| ||||| |||| |    
T  6910728 tttacaagaaacaatttattttttagatacattaaataatttatgtatttgatttagattcttgactagatgcatacattattcaatatatctaaaaagt 6910827  T
Q  602 caa 604  Q
    |||    
T  6910828 caa 6910830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 604
Target Start/End: Original strand, 7749934 - 7750036
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | |||||| |  || |||||| || |||||||||||||||| |||| |    
T  7749934 tttacaagagacaatttaatttttagatacattaaataatttatgtatttggtttagattcttgactagatacatacattattcaatgtatctaaaaagt 7750033  T
Q  602 caa 604  Q
    |||    
T  7750034 caa 7750036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 9601725 - 9601623
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||  || || |||||||| || | ||||||||  || |||||| || |||||||||||||||| |||| |    
T  9601725 tttacaagagacaatttactttttagatacatcaaataatttatgtatttggtttagatttttgactagatacatacattattcaatgtatctaaaaagt 9601626  T
Q  602 caa 604  Q
    |||    
T  9601625 caa 9601623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 37699912 - 37699810
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  37699912 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 37699813  T
Q  602 caa 604  Q
    |||    
T  37699812 caa 37699810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 7945853 - 7945950
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 599  Q
    |||||||||||||||||| |||||| ||||||| || || |||| ||| || | |||||| |  || |||||| || |||||||||||||||| ||||    
T  7945853 tttacaagaaacaatttactttttagatacattaaataatttatatatttggtttagattcttgactagatacatacattattcaatgtatctaaaaa 7945950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 502 - 638
Target Start/End: Original strand, 25027710 - 25027846
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||  || |||||||||||||||| |||| |    
T  25027710 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatatatacattattcaatgtatctaaaaagt 25027809  T
Q  602 caattatttccagtaaataagaccgtaggaagtattt 638  Q
    ||| | | ||  ||||||| ||||| ||| |||||||    
T  25027810 caactgtctcttgtaaataggaccggagggagtattt 25027846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 637
Target Start/End: Original strand, 13144896 - 13145031
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  13144896 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaaat 13144995  T
Q  602 caattatttccagtaaataagaccgtaggaagtatt 637  Q
    ||| | | ||  ||||||| ||||| ||| ||||||    
T  13144996 caactgtctcttgtaaataggaccggagggagtatt 13145031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 637
Target Start/End: Original strand, 23411181 - 23411316
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||| |||| |||| ||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  23411181 tttataagatacaaattactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatatattattcaatgtatctaaaaaat 23411280  T
Q  602 caattatttccagtaaataagaccgtaggaagtatt 637  Q
    ||||| | ||  ||||||||||||| ||| ||||||    
T  23411281 caattttctcttgtaaataagaccggagggagtatt 23411316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 31803090 - 31802988
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||  || |||||||||||||||| |||| |    
T  31803090 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttattgactagatatatacattattcaatgtatctaaaaagt 31802991  T
Q  602 caa 604  Q
    |||    
T  31802990 caa 31802988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 604
Target Start/End: Original strand, 41989580 - 41989682
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  41989580 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 41989679  T
Q  602 caa 604  Q
    |||    
T  41989680 caa 41989682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 604
Target Start/End: Original strand, 29260 - 29362
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  29260 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 29359  T
Q  602 caa 604  Q
    |||    
T  29360 caa 29362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 604
Target Start/End: Complemental strand, 492437 - 492335
Alignment:
Q  502 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 601  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || | |||| || |||||||||||||||| |||| |    
T  492437 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaatgtatctaaaaaat 492338  T
Q  602 caa 604  Q
    |||    
T  492337 caa 492335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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