View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4890-Insertion-7 (Length: 737)

Name: NF4890-Insertion-7
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4890-Insertion-7
NF4890-Insertion-7
[»] chr3 (8 HSPs)
chr3 (162-736)||(2731820-2732390)
chr3 (161-205)||(7928457-7928501)
chr3 (154-205)||(29508444-29508495)
chr3 (161-219)||(25948881-25948939)
chr3 (443-531)||(11200719-11200807)
chr3 (161-198)||(21257001-21257038)
chr3 (161-198)||(21479125-21479162)
chr3 (168-205)||(25093516-25093553)
[»] chr7 (6 HSPs)
chr7 (413-529)||(29467054-29467169)
chr7 (162-223)||(15902830-15902891)
chr7 (160-198)||(3991330-3991368)
chr7 (151-205)||(11665448-11665502)
chr7 (168-205)||(9482948-9482985)
chr7 (152-205)||(18013082-18013135)
[»] chr6 (3 HSPs)
chr6 (490-531)||(32807510-32807551)
chr6 (161-211)||(19040359-19040409)
chr6 (153-198)||(31384919-31384964)
[»] chr5 (5 HSPs)
chr5 (161-205)||(3966510-3966554)
chr5 (152-220)||(22423805-22423873)
chr5 (152-200)||(40131619-40131667)
chr5 (161-220)||(32766936-32766995)
chr5 (162-219)||(38749557-38749614)
[»] chr1 (5 HSPs)
chr1 (483-531)||(301296-301344)
chr1 (161-219)||(1486703-1486761)
chr1 (161-218)||(113306-113363)
chr1 (160-205)||(7918219-7918264)
chr1 (160-213)||(10233259-10233312)
[»] chr8 (1 HSPs)
chr8 (161-220)||(29510297-29510356)
[»] chr4 (4 HSPs)
chr4 (413-464)||(8164501-8164551)
chr4 (151-205)||(54580031-54580085)
chr4 (161-198)||(23293001-23293038)
chr4 (160-205)||(36635330-36635375)
[»] chr2 (3 HSPs)
chr2 (160-222)||(12668414-12668476)
chr2 (161-211)||(21616769-21616819)
chr2 (161-203)||(28677916-28677958)


Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 162 - 736
Target Start/End: Original strand, 2731820 - 2732390
Alignment:
Q  162 taatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgttgtgtcggtatcagtgttttacacgacacatatctgacaccaaaacaagg 261  Q
    ||||||||| | ||||||||| |||| ||| |||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||    
T  2731820 taatactttaagaaaatcacataattaagtgtaattatatgtgtatgtgttgtgtcggtgttagtgttttacacgacacatgtctgacaccaagacaagg 2731919  T
Q  262 ttaatccaaaa----aatgtccaatcttcgtaggtgaggagacaataactacaaccaactatgagaaaacacacaaaggaacaaatggttatttttctca 357  Q
    |||||||||      |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  2731920 ttaatccaagctaggaatgtccaatcttcataggtgaggagacaataactacaaccaactataagaaaacacataaaggaacaaatggttatttttctca 2732019  T
Q  358 aacctaagttccttttacaaaactagtaatctatgtaaaattattattaatccataatcaagtgtacacatgtaaattcacaaacttgtaaatttatcca 457  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  2732020 aacctaagttccatttacaaagctagtaatctgtgtaaaattattattaatccat--------gtacacatgtaaattcacaaacttgtaaatttatcca 2732111  T
Q  458 atcgaataagactatttcaaatttgaatgtcataaagaggtgaaaaccaaatcaacaaatttaaaggaaatataaaatttaatgtaatccaactttgaag 557  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2732112 atcgaacaagactatttcaaatttgaatgtcataaagaggtgaaaaccaaatcaacaaatttaaaggaaatataaaatttaatgtaatccaactttgaag 2732211  T
Q  558 ataatatagatatcagaaacaatttaatgtaatcaaaatagtcaacttgaaagagagtattgaaatcaaacttttgttaaaatgaattaattataaaacc 657  Q
    |||||||||| |||||  |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  2732212 ataatatagaaatcagttacaatttaatgtaatcaaaataatcaacttgaaaaagagtattgaaatcgaacttttgttaaaatgaattaattataaaacc 2732311  T
Q  658 cagagctaactccatcttatggatagctctttcctcgtaagagcggcctcctttagcaatagcttcatctaagggataa 736  Q
     ||||||||||| |||| |||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  2732312 gagagctaactctatctcatggatagttctttcctcgtaagagcggcctcccttagcaatagcttcatttaagggataa 2732390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 7928457 - 7928501
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataattatatgtgt 205  Q
    |||||| ||||||||||||||| |||||||| |||||||||||||    
T  7928457 ctaataatttgaaaaaatcacataattcagtgtaattatatgtgt 7928501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 29508444 - 29508495
Alignment:
Q  154 gatactactaatactttgaaaaaatcacacaattcagtataattatatgtgt 205  Q
    ||||| ||||||| ||||||||||||| | |||||||| |||||||||||||    
T  29508444 gataccactaataatttgaaaaaatcatataattcagtgtaattatatgtgt 29508495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 25948939 - 25948881
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgttgtgtcgg 219  Q
    |||||| ||||||||||||||| |||||||| |||||||| ||||  |||| |||||||    
T  25948939 ctaataatttgaaaaaatcacataattcagtgtaattataagtgttggtgtcgtgtcgg 25948881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 531
Target Start/End: Complemental strand, 11200807 - 11200719
Alignment:
Q  443 ttgtaaatttatccaatcgaataagactatttcaaatttg-aatgtcataaagaggtgaaaaccaaatcaacaaatttaaaggaaatata 531  Q
    ||||||||||||| || | ||||| ||||| ||||| ||  |||||| ||||||||||||| ||||||||| || | |||||||||||||    
T  11200807 ttgtaaatttatcaaaccaaataaaactatatcaaaattccaatgtcgtaaagaggtgaaa-ccaaatcaataactataaaggaaatata 11200719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 21257038 - 21257001
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataatta 198  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  21257038 ctaataatttgaaaaaatcacataattcagtataatta 21257001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 21479125 - 21479162
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataatta 198  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  21479125 ctaataatttgaaaaaatcacacaattcagtgtaatta 21479162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 25093516 - 25093553
Alignment:
Q  168 tttgaaaaaatcacacaattcagtataattatatgtgt 205  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  25093516 tttgagaaaatcacacaattcagtgtaattatatgtgt 25093553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 413 - 529
Target Start/End: Original strand, 29467054 - 29467169
Alignment:
Q  413 aatcaagtgtacacatgtaaattcacaaacttgtaaatttatccaatcgaataagactatttcaaatttgaatgtcataaagaggtgaaaaccaaatcaa 512  Q
    |||||||||||| |||| ||||||| ||| || ||||||||||||||| |||||||||| |  ||| |  |||||||||||||||||||||||||||| |    
T  29467054 aatcaagtgtac-catggaaattcataaatttataaatttatccaatcaaataagactaatcaaaagtccaatgtcataaagaggtgaaaaccaaatcga 29467152  T
Q  513 caaatttaaaggaaata 529  Q
    ||| ||||||| |||||    
T  29467153 caactttaaagaaaata 29467169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 15902830 - 15902891
Alignment:
Q  162 taatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgttgtgtcggtatc 223  Q
    ||||| ||||| ||||||||| |||| ||| |||||||||||||  ||||||||||||||||    
T  15902830 taataatttgataaaatcacataatttagtgtaattatatgtgtcggtgttgtgtcggtatc 15902891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 3991330 - 3991368
Alignment:
Q  160 actaatactttgaaaaaatcacacaattcagtataatta 198  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  3991330 actaataatttgaaaaaatcacataattcagtataatta 3991368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 11665502 - 11665448
Alignment:
Q  151 gctgatactactaatactttgaaaaaatcacacaattcagtataattatatgtgt 205  Q
    ||||| || ||||||| ||||||||||||||| |||||||| |||||||| ||||    
T  11665502 gctgacacaactaataatttgaaaaaatcacataattcagtctaattataagtgt 11665448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 9482948 - 9482985
Alignment:
Q  168 tttgaaaaaatcacacaattcagtataattatatgtgt 205  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  9482948 tttgagaaaatcacacaattcagtgtaattatatgtgt 9482985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 18013135 - 18013082
Alignment:
Q  152 ctgatactactaatactttgaaaaaatcacacaattcagtataattatatgtgt 205  Q
    |||| |||||||||| ||| ||||||| ||| |||||||| |||||||||||||    
T  18013135 ctgacactactaataatttaaaaaaattacataattcagtgtaattatatgtgt 18013082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 531
Target Start/End: Original strand, 32807510 - 32807551
Alignment:
Q  490 taaagaggtgaaaaccaaatcaacaaatttaaaggaaatata 531  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  32807510 taaagaggcgaaaaccaaatcaacaactttaaaggaaatata 32807551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 19040359 - 19040409
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgt 211  Q
    |||||| ||||| ||||||||| |||||||| ||||||||||||| |||||    
T  19040359 ctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgt 19040409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 31384919 - 31384964
Alignment:
Q  153 tgatactactaatactttgaaaaaatcacacaattcagtataatta 198  Q
    |||||| ||||||| ||||||||||||||| |||||||| ||||||    
T  31384919 tgatacaactaataatttgaaaaaatcacataattcagtgtaatta 31384964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 3966510 - 3966554
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataattatatgtgt 205  Q
    |||||| ||||| |||||||||||||||||| |||||||||||||    
T  3966510 ctaataatttgagaaaatcacacaattcagtgtaattatatgtgt 3966554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 22423873 - 22423805
Alignment:
Q  152 ctgatactactaatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgttgtgtcggt 220  Q
    |||| |||||||||| ||||| ||||||||| |||||| ||||||||||| |||  |||| ||||||||    
T  22423873 ctgacactactaataatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcggt 22423805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 40131619 - 40131667
Alignment:
Q  152 ctgatactactaatactttgaaaaaatcacacaattcagtataattata 200  Q
    ||||||| ||||||| ||||||||||||||| |||||||| ||||||||    
T  40131619 ctgatacaactaataatttgaaaaaatcacataattcagtttaattata 40131667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 32766995 - 32766936
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgttgtgtcggt 220  Q
    |||||| ||||| |||||| ||||||||| | ||||||||||||| ||||| ||||||||    
T  32766995 ctaataatttgagaaaatcgcacaattcaatgtaattatatgtgtttgtgtcgtgtcggt 32766936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 38749614 - 38749557
Alignment:
Q  162 taatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgttgtgtcgg 219  Q
    ||||| ||||||||||| ||| |||||| | |||||||||||||  ||||||||||||    
T  38749614 taataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtcgg 38749557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 301344 - 301296
Alignment:
Q  483 aatgtcataaagaggtgaaaaccaaatcaacaaatttaaaggaaatata 531  Q
    ||||| |||| |||||||||||||||||||||||||||||  |||||||    
T  301344 aatgtgataatgaggtgaaaaccaaatcaacaaatttaaacaaaatata 301296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 1486761 - 1486703
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgttgtgtcgg 219  Q
    |||||| ||||||||||||||| |||||||| |||||||| ||||  |||| |||||||    
T  1486761 ctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcgg 1486703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 113306 - 113363
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgttgtgtcg 218  Q
    |||||| ||||||||||||||| |||||||| |||||| | ||||| |||| ||||||    
T  113306 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtaggtgtcgtgtcg 113363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 7918264 - 7918219
Alignment:
Q  160 actaatactttgaaaaaatcacacaattcagtataattatatgtgt 205  Q
    ||||||| ||||| ||||||||| |||||||| |||||||||||||    
T  7918264 actaataatttgagaaaatcacataattcagtgtaattatatgtgt 7918219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 10233259 - 10233312
Alignment:
Q  160 actaatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgttg 213  Q
    |||||||  |||| ||||||||| |||||||| ||||||||||||| |||||||    
T  10233259 actaataaattgagaaaatcacataattcagtgtaattatatgtgtctgtgttg 10233312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 29510356 - 29510297
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgttgtgtcggt 220  Q
    |||||| ||||||||||||||| ||||||||||||||| | ||||  |||| ||||||||    
T  29510356 ctaataatttgaaaaaatcacaaaattcagtataattacaagtgtcggtgtagtgtcggt 29510297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 464
Target Start/End: Original strand, 8164501 - 8164551
Alignment:
Q  413 aatcaagtgtacacatgtaaattcacaaacttgtaaatttatccaatcgaat 464  Q
    |||||||||||| |||| ||||||||||| |||||| |||||||||||||||    
T  8164501 aatcaagtgtac-catgaaaattcacaaatttgtaattttatccaatcgaat 8164551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 54580085 - 54580031
Alignment:
Q  151 gctgatactactaatactttgaaaaaatcacacaattcagtataattatatgtgt 205  Q
    ||||| || ||||||| ||||||||||||||| |||||||| |||||||| ||||    
T  54580085 gctgacacaactaataatttgaaaaaatcacataattcagtgtaattataagtgt 54580031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 23293038 - 23293001
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataatta 198  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  23293038 ctaataatttgaaaaaatcacataattcagtataatta 23293001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 36635330 - 36635375
Alignment:
Q  160 actaatactttgaaaaaatcacacaattcagtataattatatgtgt 205  Q
    ||||||| ||||| ||||||||| |||||||| |||||||||||||    
T  36635330 actaataatttgagaaaatcacataattcagtgtaattatatgtgt 36635375  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 12668476 - 12668414
Alignment:
Q  160 actaatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgttgtgtcggtat 222  Q
    ||||||| ||||||||||| ||| |||||||| |||||||| ||||  |||| ||||||||||    
T  12668476 actaataatttgaaaaaatgacataattcagtgtaattataagtgtcggtgtcgtgtcggtat 12668414  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 21616769 - 21616819
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataattatatgtgtatgtgt 211  Q
    |||||| ||||| ||||||||| |||||||| |||||||||||||| ||||    
T  21616769 ctaataatttgagaaaatcacataattcagtgtaattatatgtgtacgtgt 21616819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 28677916 - 28677958
Alignment:
Q  161 ctaatactttgaaaaaatcacacaattcagtataattatatgt 203  Q
    |||||| ||||||||||||||| |||||||| |||||||||||    
T  28677916 ctaataatttgaaaaaatcacataattcagtgtaattatatgt 28677958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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