View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4890-Insertion-8 (Length: 674)
Name: NF4890-Insertion-8
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890-Insertion-8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Complemental strand, 46912828 - 46912344
Alignment:
| Q |
9 |
caaacacattcatcctttccctgactttgacaatgatataattgatcactacat------aatatatttgtaattaataaattgagagcgatatatatgt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46912828 |
caaacacattcatcctttccctgactttgacaatgatataattgatcactacatgcataaaatatatttgtagaaaataaattgagagcgatatatatgt |
46912729 |
T |
|
| Q |
103 |
tgaggaattaatttattaatacattcaaaaggccactaccaatatatagttataggtcccttaaaacatatataattataggtatttagctatgattaag |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46912728 |
tgaggaattaatttattaatacattcaaaaggccactaccaatatatagttataggtcccttaaaacatatataattataggtatttagctatgattaag |
46912629 |
T |
|
| Q |
203 |
cgatttttcaccaaatcttagttgccaattgatataaatgtttactacaagaaaagtttggtgtcctagtacatttatattgggatattatgcagcagtt |
302 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46912628 |
cgatttttcaccaaatcttagatgccaattgatataaatgtttactacaagaaaagtttggtgtcctagtacatttatattgggatattatgcagcagtt |
46912529 |
T |
|
| Q |
303 |
tgtcactatatatggaatcatactacagaatggttactacgtgcatatgattaagtattactacatgttgaattattaaaacaaatggaattaatcccaa |
402 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46912528 |
tgtcact--atatggaatcatactacagaattgttactacgtgcatatgattaagtattactacatgtagaattattaaaacaaatggaattaatcccaa |
46912431 |
T |
|
| Q |
403 |
tatgttcattgctataattttttagaaatttgtttatcccggtttttagctagtagtagaagggttcatttatgggtaggggcagca |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46912430 |
tatgttcattgctataattttttagaaatttgtttatcccggtttttagctagtagtggaagggttcatttatgggtaggggcagca |
46912344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 536 - 672
Target Start/End: Complemental strand, 46912297 - 46912161
Alignment:
| Q |
536 |
aaagttggaagtgttataattttctgttctgcacctagctagtttcctattttaaattttaaaaaactctctgtttttatacttttgtaatctgtgtgtg |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46912297 |
aaagttggaagtgttataattttctgttctgcacctagctagtttcctattttaaattttaaaaaactctctgtttttatacttttgtaatctgtgtgtg |
46912198 |
T |
|
| Q |
636 |
cattttgttacgtagcggccgtgacaacaattgattt |
672 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
46912197 |
cattttgttatgtagtggccgtgacaacaattgattt |
46912161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University