View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890-Insertion-9 (Length: 673)
Name: NF4890-Insertion-9
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890-Insertion-9 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 8e-63; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 482 - 673
Target Start/End: Complemental strand, 31935777 - 31935574
Alignment:
| Q |
482 |
ttaaaaatgagttcagttgagatgcttgataaaataatcatattgtcacgtaaatctacactgtaactttttnnnnnnnntaatatactcaactcttata |
581 |
Q |
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| T |
31935777 |
ttaaaaatgagttcagttgagatgcttgataaaataatcatattgtcacgtaaatctacactgtaacttttttaaaaaaataatatactcaactcttata |
31935678 |
T |
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| Q |
582 |
gatgtggaaattattatttaccaaatattgtc------------atgcaagcaaaaagagtgatatttatcaattgtgattggtatatatggttagatct |
669 |
Q |
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| T |
31935677 |
gatgtggaaaatattatttaccaaatattttccttcaacattgaatgcaagcaaaaagagtgatatttatcaattgtgattggtatatatggttaaacct |
31935578 |
T |
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| Q |
670 |
tcta |
673 |
Q |
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|||| |
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| T |
31935577 |
tcta |
31935574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 251 - 378
Target Start/End: Complemental strand, 31936045 - 31935918
Alignment:
| Q |
251 |
acaaccgcatgttcgaatagcgacaggtggagaatacatggcaggttctcaataagaatcaagatgtttcttcatatggcatgcattgagaaaaagagtg |
350 |
Q |
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| T |
31936045 |
acaaccgcatgttcaaatagcgacaggtggagaatacatggcaagttctcaataagaatcaagatgtttcttcatatggcatgcattgagaaaaagagtg |
31935946 |
T |
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| Q |
351 |
attcgttgatacaatatagtatagtatc |
378 |
Q |
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| T |
31935945 |
attcgttgatacaatatagtatcgtatc |
31935918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 31936260 - 31936152
Alignment:
| Q |
8 |
acacattgaacacatcaccgtattttattggttcttgctcatgtctccttggttgttcctgactcatgatgatattattgttaccaaaactgctcttaaa |
107 |
Q |
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| T |
31936260 |
acacattgaacacatcaccgtattttattggttcttgctcatgtctccttggttgttcctgactcatgatgatattattgttaccaaaactgctcttaaa |
31936161 |
T |
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| Q |
108 |
aataagtga |
116 |
Q |
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||||||||| |
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| T |
31936160 |
aataagtga |
31936152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 31936114 - 31936044
Alignment:
| Q |
156 |
ttaggagtgaaggtgcgtgacattgatacggtgagagttatattcattgcattgcaagcggttaaggacac |
226 |
Q |
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| T |
31936114 |
ttaggagtgaaggtgcgtgacattgatacggtgagagttatattcattgcattgcaagcggttaaggacac |
31936044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 331 - 378
Target Start/End: Complemental strand, 31932884 - 31932837
Alignment:
| Q |
331 |
atgcattgagaaaaagagtgattcgttgatacaatatagtatagtatc |
378 |
Q |
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| T |
31932884 |
atgcattgagaaagagagtgattcattgatacaatatagtatagtatc |
31932837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 31933286 - 31933215
Alignment:
| Q |
8 |
acacattgaacacatcaccgtattttattggttcttgctcatgtctccttggttgttcctgactcatgatga |
79 |
Q |
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| T |
31933286 |
acacgttgaatatatcaccgtattttattggttcttgctcaggtcttcgtggcttctcttgactcatgatga |
31933215 |
T |
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