View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4890_high_13 (Length: 377)

Name: NF4890_high_13
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4890_high_13
NF4890_high_13
[»] scaffold0210 (3 HSPs)
scaffold0210 (13-359)||(11179-11525)
scaffold0210 (243-359)||(3192-3321)
scaffold0210 (173-219)||(3327-3373)
[»] chr3 (4 HSPs)
chr3 (153-359)||(12713480-12713686)
chr3 (13-106)||(12713390-12713483)
chr3 (243-359)||(12721347-12721476)
chr3 (173-219)||(12721295-12721341)
[»] chr5 (2 HSPs)
chr5 (145-272)||(7878721-7878848)
chr5 (275-316)||(7879914-7879955)
[»] scaffold0479 (3 HSPs)
scaffold0479 (246-324)||(12669-12747)
scaffold0479 (173-219)||(12756-12802)
scaffold0479 (325-359)||(12621-12655)
[»] chr8 (2 HSPs)
chr8 (194-268)||(32829392-32829466)
chr8 (228-269)||(33019248-33019289)


Alignment Details
Target: scaffold0210 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 11525 - 11179
Alignment:
Q  13 aatatagttatatgctggaatgaaatctcctacatagttaaattggagacaagctatttggttgatttccagctccgtgtggaggtaccgtcaatgtcat 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  11525 aatatagctatatgctggaatgaaatctcctacatagttaaattggagacaaactatttggttgatttccagcttcgtgtggaggtactgtcaatgtcat 11426  T
Q  113 atatagcgaaattgtttcccgaaatgttagatctgagttttcaaacatacggattgctgaaacgagaaaaatcatctacaaccaaagatatgatgaagtc 212  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  11425 atatagtgaaattgtttcccgaaatgttacatctgagttttcaaacatatggattgctggaacgagaaatatcatctacaaccaaagatatgatgaagtc 11326  T
Q  213 tgtgccggttgccctccttatctttttggaagctaataacaacttatcagtctcattttccgatggcacctgtccatagtacaatagatacacagaagtt 312  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11325 tgtgccggttgccctccttatctttttgaaagctaataacaacttatcagtctcattttccgatggcacctgtccatagtacaatagatacgcagaagtt 11226  T
Q  313 tctcaatccctcgtattggagaatcacgaggacccagctgatttaac 359  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  11225 tctcaatccctcgtatcggataatcacgaggacccagctgatttaac 11179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 243 - 359
Target Start/End: Complemental strand, 3321 - 3192
Alignment:
Q  243 agctaataacaacttatcagtctcattttccgatggcacctgtccatagtacaatagatacacagaagtttctcaatccctc-------------gtatt 329  Q
    ||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||| |||| |||||||             |||||    
T  3321 agctaataacagcttatcagtctcattttccgatggcaccagtacatagtacaattgatacgcagaagtctctctatccctcatgatgaagcattgtatt 3222  T
Q  330 ggagaatcacgaggacccagctgatttaac 359  Q
    ||||||||||||||||||||||||||||||    
T  3221 ggagaatcacgaggacccagctgatttaac 3192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 3373 - 3327
Alignment:
Q  173 aacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccg 219  Q
    |||||||| |||||||| ||||||  |||||||||||||||||||||    
T  3373 aacgagaagaatcatctgcaaccattgatatgatgaagtctgtgccg 3327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 153 - 359
Target Start/End: Original strand, 12713480 - 12713686
Alignment:
Q  153 tcaaacatacggattgctgaaacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccggttgccctccttatctttttggaagctaataac 252  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12713480 tcaaacatacagattgctggaacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccggttgccctccttatctttttgaaagctaataac 12713579  T
Q  253 aacttatcagtctcattttccgatggcacctgtccatagtacaatagatacacagaagtttctcaatccctcgtattggagaatcacgaggacccagctg 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12713580 aacttatcagtctcattttccgatggcacctgtccatagtacaatagatacacagaagtttctcaatccctcgtatcggagaatcacgaggacccagctg 12713679  T
Q  353 atttaac 359  Q
    |||||||    
T  12713680 atttaac 12713686  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 12713390 - 12713483
Alignment:
Q  13 aatatagttatatgctggaatgaaatctcctacatagttaaattggagacaagctatttggttgatttccagctccgtgtggaggtaccgtcaa 106  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  12713390 aatatagttatatgctggaatgaaaactcctacatagttaaattggagacaagctatttggttgatttccagctccgtgtggtggtactgtcaa 12713483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 243 - 359
Target Start/End: Original strand, 12721347 - 12721476
Alignment:
Q  243 agctaataacaacttatcagtctcattttccgatggcacctgtccatagtacaatagatacacagaagtttctcaatccctc-------------gtatt 329  Q
    ||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||| |||| |||||||             |||||    
T  12721347 agctaataacagcttatcagtctcattttccgatggcaccagtacatagtacaattgatacgcagaagtctctctatccctcatgatgaagcattgtatt 12721446  T
Q  330 ggagaatcacgaggacccagctgatttaac 359  Q
    ||||||||||||||||||||||||||||||    
T  12721447 ggagaatcacgaggacccagctgatttaac 12721476  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 12721295 - 12721341
Alignment:
Q  173 aacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccg 219  Q
    |||||||| |||||||| ||||||  |||||||||||||||||||||    
T  12721295 aacgagaagaatcatctgcaaccattgatatgatgaagtctgtgccg 12721341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 145 - 272
Target Start/End: Original strand, 7878721 - 7878848
Alignment:
Q  145 ctgagttttcaaacatacggattgctgaaacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccggttgccctccttatctttttggaag 244  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  7878721 ctgagttttccaacatacgcattgctggaacgagaaaaatcatcagcaaccaaagatatgatgaagtcagtgccggttgccctccttatctttttggcag 7878820  T
Q  245 ctaataacaacttatcagtctcattttc 272  Q
    ||||||||| ||||||||||||||||||    
T  7878821 ctaataacagcttatcagtctcattttc 7878848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 7879914 - 7879955
Alignment:
Q  275 atggcacctgtccatagtacaatagatacacagaagtttctc 316  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  7879914 atggcaccagtccatagtacaatagatacgcagaagtttctc 7879955  T

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Target: scaffold0479 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 324
Target Start/End: Complemental strand, 12747 - 12669
Alignment:
Q  246 taataacaacttatcagtctcattttccgatggcacctgtccatagtacaatagatacacagaagtttctcaatccctc 324  Q
    |||||||| |||||||||||||||||||| ||||||| || ||||||||||| ||||| |||||||||||| |||||||    
T  12747 taataacagcttatcagtctcattttccggtggcaccagtacatagtacaattgatacgcagaagtttctctatccctc 12669  T

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Target: scaffold0479; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 12802 - 12756
Alignment:
Q  173 aacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccg 219  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||    
T  12802 aacgagaagaatcatctgcaaccaaagatatgatgaagtctgtgccg 12756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 359
Target Start/End: Complemental strand, 12655 - 12621
Alignment:
Q  325 gtattggagaatcacgaggacccagctgatttaac 359  Q
    |||| ||||||||||||||||||||||||||||||    
T  12655 gtatcggagaatcacgaggacccagctgatttaac 12621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 32829466 - 32829392
Alignment:
Q  194 ccaaagatatgatgaagtctgtgccggttgccctccttatctttttggaagctaataacaacttatcagtctcat 268  Q
    |||| ||||||| |||||| ||||| || ||||| ||||||||| |||  |||||||||||||||| | ||||||    
T  32829466 ccaaggatatgacgaagtcggtgcctgtggcccttcttatctttctggcggctaataacaacttattactctcat 32829392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 33019248 - 33019289
Alignment:
Q  228 ccttatctttttggaagctaataacaacttatcagtctcatt 269  Q
    |||||||||||||| ||||||||||||||||| | |||||||    
T  33019248 ccttatctttttggcagctaataacaacttattactctcatt 33019289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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