View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4890_high_23 (Length: 238)

Name: NF4890_high_23
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4890_high_23
NF4890_high_23
[»] chr6 (8 HSPs)
chr6 (82-221)||(3673009-3673148)
chr6 (1-53)||(3673279-3673331)
chr6 (5-72)||(31945840-31945907)
chr6 (5-72)||(3887870-3887937)
chr6 (5-72)||(9461404-9461471)
chr6 (5-72)||(15981905-15981972)
chr6 (5-72)||(28238242-28238308)
chr6 (6-72)||(3729533-3729598)
[»] chr7 (3 HSPs)
chr7 (5-72)||(28038815-28038882)
chr7 (5-72)||(1324819-1324885)
chr7 (4-67)||(41672459-41672523)
[»] chr4 (4 HSPs)
chr4 (5-72)||(33246425-33246491)
chr4 (5-72)||(25477336-25477403)
chr4 (5-69)||(52198655-52198719)
chr4 (5-72)||(52226130-52226198)
[»] chr8 (8 HSPs)
chr8 (5-72)||(10860831-10860898)
chr8 (5-72)||(14522272-14522339)
chr8 (6-72)||(26878657-26878723)
chr8 (6-72)||(45203869-45203935)
chr8 (4-72)||(7727276-7727344)
chr8 (4-72)||(12998615-12998683)
chr8 (5-72)||(36437612-36437680)
chr8 (20-72)||(40517851-40517903)
[»] chr3 (7 HSPs)
chr3 (5-72)||(41308705-41308772)
chr3 (4-72)||(26517143-26517211)
chr3 (5-72)||(20945229-20945296)
chr3 (5-72)||(28228289-28228356)
chr3 (6-72)||(14645819-14645885)
chr3 (30-72)||(28229275-28229317)
chr3 (5-72)||(31531056-31531124)
[»] chr1 (4 HSPs)
chr1 (20-72)||(51997066-51997118)
chr1 (5-72)||(4817832-4817899)
chr1 (5-72)||(4829632-4829699)
chr1 (5-69)||(25258444-25258507)
[»] scaffold1091 (1 HSPs)
scaffold1091 (5-72)||(1840-1907)
[»] scaffold0038 (1 HSPs)
scaffold0038 (5-72)||(38404-38470)
[»] chr2 (1 HSPs)
chr2 (5-72)||(9718099-9718166)
[»] chr5 (2 HSPs)
chr5 (31-72)||(600876-600917)
chr5 (5-69)||(5845290-5845354)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 3673148 - 3673009
Alignment:
Q  82 aatcaaattaaatacacatagatgttactaattttctaaatatatgtgaaatttttgacagggatttataataagaggggactgtaatttttcttctaat 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||     
T  3673148 aatcaaattaaatacacatagatgttactaattttctaaatatatgtgaaatttttgatagggacttataataagaggggactgtaatttttcttctaac 3673049  T
Q  182 tgtatattttagaataaaatatgttttcctaccaattgga 221  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3673048 tgtatattttagaataaaatatgttttcctaccaattgga 3673009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3673331 - 3673279
Alignment:
Q  1 taaacaaattactagctgaatttattatcttttttctaaacataatcataaat 53  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  3673331 taaacaaattactagctgaatttattatctttttcccaaacataatcataaat 3673279  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 31945840 - 31945907
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| ||||| |||||||||  | ||| ||||||||||||||||||||    
T  31945840 caaattactagatgcatttattatttttttcctaaacatatccctaattaatactactaacttgtctt 31945907  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 3887870 - 3887937
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||| ||| || ||||||||| ||||| |||||||||  | ||| ||||||||||||||||||||    
T  3887870 caaattattagatgcatttattatttttttcctaaacatacccctaattaatactactaacttgtctt 3887937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 9461471 - 9461404
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||| ||| || ||||||||| |||||||||||||||  ||||| |||| |||||||| ||||||    
T  9461471 caaattattagatgcatttattattttttttctaaacatacccataattaattctactaacctgtctt 9461404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 15981972 - 15981905
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| ||||||| |||||||   |||| |||||||| |||||||||||    
T  15981972 caaattactagatgcatttattatattttttcaaaacatacctataattaatactattaacttgtctt 15981905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 28238242 - 28238308
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| ||||| |||||||||  | ||| ||||||||||||||||||||    
T  28238242 caaattactagatgcatttattat-tttttcctaaacatacccctaattaatactactaacttgtctt 28238308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 3729598 - 3729533
Alignment:
Q  6 aaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    |||||| ||| || ||||||||| ||||||||||||||| || ||| ||||| ||||||||||||||    
T  3729598 aaattattagatgcatttattat-ttttttctaaacatactcctaattaatattactaacttgtctt 3729533  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 28038815 - 28038882
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| ||||| ||||||||| |||||| ||||||| ||||||||||||    
T  28038815 caaattactagatgtatttattatgtttttcctaaacatattcataattaatactgctaacttgtctt 28038882  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 1324885 - 1324819
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| |||||||||||| ||||| |||||||||  | ||| ||||||||||||||||||||    
T  1324885 caaattactagatgaatttattat-tttttcctaaacatacccctaattaatactactaacttgtctt 1324819  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 41672459 - 41672523
Alignment:
Q  4 acaaattactagctgaatttattatctttttt-ctaaacataatcataaataatactactaactt 67  Q
    |||||||||||| || ||||||||| |||||| |||||||||  | ||| |||||||||||||||    
T  41672459 acaaattactagatgcatttattattttttttcctaaacatacccctaattaatactactaactt 41672523  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 33246425 - 33246491
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| ||||||||||||||| || ||| ||||||||||||||||||||    
T  33246425 caaattactagatgcatttattat-ttttttctaaacatactcctaattaatactactaacttgtctt 33246491  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 25477403 - 25477336
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| ||||| |||||||||  | ||| ||||||||||| ||||||||    
T  25477403 caaattactagatgcatttattatttttttcctaaacatacccctaattaatactactatcttgtctt 25477336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 52198655 - 52198719
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgt 69  Q
    ||||||||||| |  ||||||||| ||||| |||||||||  | ||| |||||||||||||||||    
T  52198655 caaattactagatacatttattatttttttcctaaacatacccctaattaatactactaacttgt 52198719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 52226198 - 52226130
Alignment:
Q  5 caaattactagctgaatttattatcttttttct-aaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || |||||||||  ||||||| |||||||  | ||| ||||||||||||||||||||    
T  52226198 caaattactagatgcatttattattatttttcttaaacatacccctaattaatactactaacttgtctt 52226130  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 10860898 - 10860831
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| ||||| ||||||||   ||||| ||||||||||||||||||||    
T  10860898 caaattactagatgcatttattatatttttcctaaacatttccataattaatactactaacttgtctt 10860831  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 14522272 - 14522339
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| ||||| |||||||||  | ||| ||||||||||||||| ||||    
T  14522272 caaattactagatgcatttattatttttttcctaaacatacccttaattaatactactaacttatctt 14522339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 26878657 - 26878723
Alignment:
Q  6 aaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    |||||||||| || ||||||||| ||||| |||||||||  | ||| ||||||||||||||| ||||    
T  26878657 aaattactagatgtatttattatttttttcctaaacatacccctaattaatactactaacttatctt 26878723  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 45203935 - 45203869
Alignment:
Q  6 aaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    |||||||||| || |||||||||  |||| |||||||||  | ||| ||||||||||||||||||||    
T  45203935 aaattactagatgcatttattattattttcctaaacatacccctaattaatactactaacttgtctt 45203869  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 7727276 - 7727344
Alignment:
Q  4 acaaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    |||||||| ||| || ||||||||| |||| || ||| |||| | ||| ||||||||||||||||||||    
T  7727276 acaaattattaggtgcatttattattttttctccaaatataaccctaattaatactactaacttgtctt 7727344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 12998615 - 12998683
Alignment:
Q  4 acaaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    |||||||||| | || ||| ||||| ||||| |||||||||  | ||| ||||||||||||||||||||    
T  12998615 acaaattactcgatgcattaattatttttttcctaaacatacccctaattaatactactaacttgtctt 12998683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 36437680 - 36437612
Alignment:
Q  5 caaattactagctgaatttattatcttttttc-taaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| ||||| | ||||||||  | ||| ||||||||||||||||||||    
T  36437680 caaattactagatgcatttattatttttttgcctaaacatacccctaactaatactactaacttgtctt 36437612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 40517903 - 40517851
Alignment:
Q  20 atttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||| ||||| |||||||||  | ||| ||||||||||||||||||||    
T  40517903 atttattatttttttcctaaacatacccctaattaatactactaacttgtctt 40517851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 41308705 - 41308772
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| ||||| |||||||||  | ||| ||||||||||||||||||||    
T  41308705 caaattactagatgcatttattatttttttcctaaacatacccctaattaatactactaacttgtctt 41308772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 26517143 - 26517211
Alignment:
Q  4 acaaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    |||||||||||| || ||||||||| ||||  |||||||||  | ||| ||||||||||||||||||||    
T  26517143 acaaattactagatgcatttattattttttgcctaaacatacccctaattaatactactaacttgtctt 26517211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 20945229 - 20945296
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || |||| ||||  |||| |||||||||| | ||| ||||||||||||||||||||    
T  20945229 caaattactagatgcatttgttattattttcctaaacataaccctaattaatactactaacttgtctt 20945296  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 28228356 - 28228289
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||| ||| || |||||||||  |||||||||| ||| |||||| |||||||||||| |||||||    
T  28228356 caaattagtagatgcatttattataatttttctaaatatactcataattaatactactaatttgtctt 28228289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 14645819 - 14645885
Alignment:
Q  6 aaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    |||||||||  || ||||||||| |||||||||||||||  | ||  ||||||||||||||||||||    
T  14645819 aaattactatatgcatttattattttttttctaaacatacccctagttaatactactaacttgtctt 14645885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 28229317 - 28229275
Alignment:
Q  30 ttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    |||||||||||||||  ||||| ||||||||||||||||||||    
T  28229317 ttttttctaaacatacccataattaatactactaacttgtctt 28229275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 31531056 - 31531124
Alignment:
Q  5 caaattactagctgaatttattatcttttttc-taaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || |||||||||  |||||| ||||||||  | ||| ||||||||||||||||||||    
T  31531056 caaattactagatgcatttattattatttttcctaaacatacccctaattaatactactaacttgtctt 31531124  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 51997118 - 51997066
Alignment:
Q  20 atttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||| ||||| ||||||||| || ||| ||||||||||||||||||||    
T  51997118 atttattatttttttcctaaacatactcttaattaatactactaacttgtctt 51997066  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 4817832 - 4817899
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| || ||  |||||||| || ||| ||||||||||||||||||||    
T  4817832 caaattactagatgtatttattattttgttcttaaacatactcttaattaatactactaacttgtctt 4817899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 4829632 - 4829699
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| || ||  |||||||| || ||| ||||||||||||||||||||    
T  4829632 caaattactagatgtatttattattttgttcttaaacatactcttaattaatactactaacttgtctt 4829699  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 25258507 - 25258444
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgt 69  Q
    |||||||| || || ||||||||| ||||||||||||||| || ||| |||||||||||| ||||    
T  25258507 caaattacaagatgcatttattat-ttttttctaaacatactcctaattaatactactaaattgt 25258444  T

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Target: scaffold1091 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 1840 - 1907
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| ||||| |||||||||  | ||| |||||||||||| |||||||    
T  1840 caaattactagatgcatttattatgtttttcctaaacatacccctaattaatactactaatttgtctt 1907  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 38404 - 38470
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||| || ||||||||| ||||| |||||||||  | ||| ||||||||||||||||||||    
T  38404 caaattactagatgcatttattat-tttttcctaaacatacccctaattaatactactaacttgtctt 38470  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 9718099 - 9718166
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||| ||| || ||||||||| ||||| |||||||||  | ||| ||||||||||||||||||||    
T  9718099 caaattattagatgcatttattatttttttcctaaacatacccttaattaatactactaacttgtctt 9718166  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 600917 - 600876
Alignment:
Q  31 tttttctaaacataatcataaataatactactaacttgtctt 72  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||    
T  600917 tttttctaaacataatcctaattaatattactaacttgtctt 600876  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 5845354 - 5845290
Alignment:
Q  5 caaattactagctgaatttattatcttttttctaaacataatcataaataatactactaacttgt 69  Q
    ||||||| ||| || ||||||||  ||||| ||||||||| || ||| |||||||||||||||||    
T  5845354 caaattattagatgcatttattaattttttcctaaacatactcctaattaatactactaacttgt 5845290  T

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