View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_high_6 (Length: 547)
Name: NF4890_high_6
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 7e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 88 - 271
Target Start/End: Complemental strand, 18717158 - 18716976
Alignment:
| Q |
88 |
aataccgaaaatacataaaaagtttaannnnnnnatatggtgtcttaatcattgaaagtgacattttcaagaaactggcccacactttggttgcccttta |
187 |
Q |
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| T |
18717158 |
aataccgaaaatacattaaaagtttaatttttttatatggtgtcttaatcattgaaagtgacattttcaagaaactggcccacactttggttgcccttta |
18717059 |
T |
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| Q |
188 |
tacaataacattaataaaaagaatcttatataggcacctgtgtaaaacagtaacaaaaatcaataaaactttatttttgagagg |
271 |
Q |
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| T |
18717058 |
tacaaaaacattaacaaaaagaatcttatataggcacctgt-taaaacagtaacaaaaatcaataaaactttatttttgagagg |
18716976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 337 - 459
Target Start/End: Complemental strand, 18716913 - 18716791
Alignment:
| Q |
337 |
tttgttggacatatctctagcaatcatcacccgaataattccaaatgaaacagcgggcttattccaataccaaaccatcaattatattacaactctccta |
436 |
Q |
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| T |
18716913 |
tttgttggacatatctctagcaatcatcacccgaataattccaaatgaaacagcgggcttattccaataccaaaccatcaattatattacaactctccta |
18716814 |
T |
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| Q |
437 |
acttatatgcttttataaaaccc |
459 |
Q |
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| T |
18716813 |
acttatatgcttttataaaaccc |
18716791 |
T |
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