View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_high_8 (Length: 471)
Name: NF4890_high_8
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 81 - 370
Target Start/End: Complemental strand, 16972351 - 16972053
Alignment:
| Q |
81 |
atcttattccacatccaatccctttatc------attttgctttcgtcctctttattttcttagagtgtatttgaatgatgtaattgaatgtgttagaaa |
174 |
Q |
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| T |
16972351 |
atcttattccacatccaatccctttatcttcatcattttgctttcgtcctctttattttcttagagtatgtttgaatgatgcaattgaatgtgttagaaa |
16972252 |
T |
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| Q |
175 |
aattaaaat-cttgacaactgaagtgccccaattgaattcccttaatttctattattttttgtttggatagggtaatacaatttttt-attcttgaacta |
272 |
Q |
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| T |
16972251 |
aattaaaattcttcacaactgaagtgccccaattgaattcccttaatttctattattttttgtttggatagggtaatacaatttttttattcttgaacta |
16972152 |
T |
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| Q |
273 |
tgtttgattatttttataattttaaattctattgggatagaagaataaatataatgaaaatggt-nnnnnnngttagaattttcaaagatatgaaagaa |
370 |
Q |
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| T |
16972151 |
tgtttgattatttttataattttaaattctattgggatagaagaataaatataatcaaaatggtaaaaaaaagttagaattttcaaagatatgaaagaa |
16972053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 16972468 - 16972406
Alignment:
| Q |
20 |
caaactccactcccatcgtcgccattcctatctttgacaattatccttaatctgccgacaaat |
82 |
Q |
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| T |
16972468 |
caaactccactcccatcgtcgccattcctatctttgacaattatccttaatctgccgacaaat |
16972406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 419 - 461
Target Start/End: Complemental strand, 16972054 - 16972012
Alignment:
| Q |
419 |
aataaggacaagttgcaaaacaaccacgagatgtgcacctttg |
461 |
Q |
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| T |
16972054 |
aataaggacaagttgcaaaacaaccacgagatgtgcacctttg |
16972012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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