View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4890_low_1 (Length: 856)

Name: NF4890_low_1
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4890_low_1
NF4890_low_1
[»] chr3 (22 HSPs)
chr3 (170-849)||(9370248-9370902)
chr3 (399-849)||(9348594-9349044)
chr3 (20-377)||(9349043-9349401)
chr3 (529-606)||(9341567-9341644)
chr3 (478-607)||(9493997-9494126)
chr3 (517-606)||(9613103-9613192)
chr3 (764-846)||(9341314-9341396)
chr3 (537-602)||(9403059-9403124)
chr3 (544-606)||(9353757-9353819)
chr3 (537-602)||(9421298-9421363)
chr3 (780-824)||(9407962-9408006)
chr3 (484-607)||(9616652-9616778)
chr3 (780-823)||(9426170-9426213)
chr3 (780-823)||(9441257-9441300)
chr3 (484-581)||(9625705-9625802)
chr3 (532-588)||(9449146-9449202)
chr3 (532-607)||(9654636-9654714)
chr3 (780-823)||(9417167-9417210)
chr3 (544-602)||(9344679-9344737)
chr3 (544-606)||(9377942-9378004)
chr3 (764-813)||(9353538-9353587)
chr3 (538-607)||(9433703-9433772)
[»] chr2 (1 HSPs)
chr2 (532-607)||(20693526-20693601)
[»] chr1 (5 HSPs)
chr1 (532-635)||(8813611-8813714)
chr1 (529-605)||(235947-236023)
chr1 (532-634)||(229885-229987)
chr1 (532-602)||(250616-250686)
chr1 (542-587)||(4440665-4440710)
[»] chr6 (4 HSPs)
chr6 (542-602)||(28133077-28133137)
chr6 (532-602)||(28177179-28177249)
chr6 (542-602)||(28177102-28177162)
chr6 (532-602)||(28219946-28220016)
[»] scaffold0038 (1 HSPs)
scaffold0038 (532-602)||(20444-20514)


Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 170 - 849
Target Start/End: Complemental strand, 9370902 - 9370248
Alignment:
Q  170 atccttgattagatgtctaacccgagcaaagtctaatataataaagctacctatattttttactcatatatatccaaattccaaaccctatatcctgaaa 269  Q
    |||||| |||| |||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||       |||||||||||||||    
T  9370902 atccttaattatatgtctaagccgaacaaagtctaatataataaagctacctatatattttactcatatatatacaaa-------ccctatatcctgaaa 9370810  T
Q  270 gatcttccaatataaatatgaatttctgatatcacaaagaagttaaccctattcttcaacagtgcagnnnnnnnngtcacttagggtttggttcctttac 369  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  9370809 gatcttccaatataaatatgaatttctgatatcacagagaagttaaccctattcttcaacagtgcagttttttttgtcacttagggtttggttcctttac 9370710  T
Q  370 ttcttctttttgctattttacggaagacgttaaccttttaacgaaagaggaatgaaagagaagaaggaaagaaaagtgaaccagcggggcacatcaacat 469  Q
    ||| |   |||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||| ||||||               ||    
T  9370709 ttcct---tttgctattttacggaagacgtaaacctttttacgaaagaggaatgaaaaagaagacggaaagaaaagagaacca---------------at 9370628  T
Q  470 catctgcttcagcttggtctgcactcccaatggagcttgtgagtttgatatcacaattcattgacaacgaaatcgatctcattcgttttcgatcaatttg 569  Q
    ||||| |  ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9370627 catctacggcagattggtctgcactcccgatggagcttgtgagtttgatatcacaattcatcgacaacgaaatcgatctcattcgttttcgatcaatttg 9370528  T
Q  570 ttccaattggcgctcttcctccattccaaatcaccatcgtcaaatttcacctatcaaattcccactcgtacatgattccgaagactaccattcctcagaa 669  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||| | |||||||||||||||||    
T  9370527 ttccaattggcgctcttcctccattccaaatcaccatcttcaaacttcacccatcaaattcccactcgtatatgattccggaaactaccattcctcagaa 9370428  T
Q  670 aaagaaatcattgattccctcaacaataccaactcaacattctattacctctccaaacgcactctcgtccttgtcaagccaccacaacatggaaaaaccc 769  Q
    |||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9370427 aaagaaatcattgattccctcaacaataccaactcaccattatgttacctctccaaacgcactctcgtccttgtcaagccaccacaacatggaaaaaccc 9370328  T
Q  770 taattcgtcgtcgtccttggttgattagagttacacaaaactcacatggaaaaactaaattcttcgacccattcatctca 849  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  9370327 taattcgtcgtcgtccttggttgattagagttacacaaaactcacatggaaaaactaaattcttcaacccagtcatctca 9370248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 399 - 849
Target Start/End: Complemental strand, 9349044 - 9348594
Alignment:
Q  399 ttaaccttttaacgaaagaggaatgaaagagaagaaggaaagaaaagtgaaccagcggggcacatcaacatcatctgcttcagcttggtctgcactccca 498  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||    
T  9349044 ttaaccttttaacgaaagaggaatgaaaaagaagaaggaaagaaaagtgaaccagcggggcacatcaacatcatctacggcagattggtctgcactccca 9348945  T
Q  499 atggagcttgtgagtttgatatcacaattcattgacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaa 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9348944 atggagcttgtgagtttgatatcacaattcattgacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaa 9348845  T
Q  599 atcaccatcgtcaaatttcacctatcaaattcccactcgtacatgattccgaagactaccattcctcagaaaaagaaatcattgattccctcaacaatac 698  Q
    ||||||||||||||| |||||| |||  ||||||||||||||||||||||  | ||||||||  ||||||||||||||||||||||||||||||||||||    
T  9348844 atcaccatcgtcaaacttcacccatcctattcccactcgtacatgattccagaaactaccatctctcagaaaaagaaatcattgattccctcaacaatac 9348745  T
Q  699 caactcaacattctattacctctccaaacgcactctcgtccttgtcaagccaccacaacatggaaaaaccctaattcgtcgtcgtccttggttgattaga 798  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  9348744 caactcaacattctattacctctccaaacgcactctcgtccttgtcaggccaccacaacatggaaaaaccccaattcatcgtcgtccttggttgattaga 9348645  T
Q  799 gttacacaaaactcacatggaaaaactaaattcttcgacccattcatctca 849  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9348644 gttacacaaaactcacatggaaaaactaaattcttcgacccattcatctca 9348594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 9349401 - 9349043
Alignment:
Q  20 cgttccgcgtcggtccgtggtgaactttatttcaggatatcatgcatacacaattttagccatcattaattttannnnnnncttccctnnnnnnnnn-tt 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||       |||||||          ||    
T  9349401 cgttccgcgtcggtccgtggtgaactttatttccggatatcatgtatacacaattttagccatcattaattttatttttttcttccctaaaaaaaaaatt 9349302  T
Q  119 annnnnnncttgaagaattagccatcattaattattcttcgnnnnnnntatatccttgattagatgtctaacccgagcaaagtctaatataataaagcta 218  Q
    |       ||||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9349301 atttttttcttgaaggattagccatcattaattattcttcgaaaaaaatatatccttgattagatgtctaacccgagcaaagtctaatataataaagcta 9349202  T
Q  219 cctatattttttactcatatatatccaaattccaaaccctatatcctgaaagatcttccaatataaatatgaatttctgatatcacaaagaagttaaccc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9349201 cctatattttttactcatatatatccaaattccaaaccctatatcctgaaagatcttccaatataaatatgaatttctgatatcacagagaagttaaccc 9349102  T
Q  319 tattcttcaacagtgcagnnnnnnnngtcacttagggtttggttcctttacttcttctt 377  Q
    ||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  9349101 tattcttcaacagtgcagttttttttgtcacttagggtttggttcctttacttcttctt 9349043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 529 - 606
Target Start/End: Complemental strand, 9341644 - 9341567
Alignment:
Q  529 attgacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccat 606  Q
    ||||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  9341644 attgacaccgaaatcgatctcattcgatttcgatccatttgttccaattggcgttcttcctccatcccaaatcaccat 9341567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 478 - 607
Target Start/End: Original strand, 9493997 - 9494126
Alignment:
Q  478 tcagcttggtctgcactcccaatggagcttgtgagtttgatatcacaattcattgacaacgaaatcgatctcattcgttttcgatcaatttgttccaatt 577  Q
    |||| ||||||||||||||| ||||| ||||||| | ||||||||||    || ||||  ||||||||||||||||| ||||||||| | |||| |||||    
T  9493997 tcagattggtctgcactcccgatggatcttgtgaatctgatatcacagggaatcgacactgaaatcgatctcattcgctttcgatcagtctgttgcaatt 9494096  T
Q  578 ggcgctcttcctccattccaaatcaccatc 607  Q
    |||||||||| ||||||| ||| |||||||    
T  9494097 ggcgctcttcttccattcgaaagcaccatc 9494126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 517 - 606
Target Start/End: Original strand, 9613103 - 9613192
Alignment:
Q  517 atatcacaattcattgacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccat 606  Q
    |||||||||| ||||||||||||| |||| || |||| |||||||||||||||||| |  ||||||||||||||||| ||||||||||||    
T  9613103 atatcacaatgcattgacaacgaactcgaccttattcattttcgatcaatttgttcaacgtggcgctcttcctccatcccaaatcaccat 9613192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 764 - 846
Target Start/End: Complemental strand, 9341396 - 9341314
Alignment:
Q  764 aaaccctaattcgtcgtcgtccttggttgattagagttacacaaaactcacatggaaaaactaaattcttcgacccattcatc 846  Q
    |||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||| ||| ||||  ||||| |||||    
T  9341396 aaaccctaattcctcgtcgtccttggttgattagatttactcaaaactcacatggcaaaaccaaactctttcacccactcatc 9341314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Complemental strand, 9403124 - 9403059
Alignment:
Q  537 cgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatca 602  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||| | ||||||    
T  9403124 cgaaatcgatctcattcgctttcgatcagtttgttccaattggcgttcttcttccatccgaaatca 9403059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 544 - 606
Target Start/End: Complemental strand, 9353819 - 9353757
Alignment:
Q  544 gatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccat 606  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||| | ||||||||| |||||    
T  9353819 gatctcattcgttttcgatcagtttgttcaacttggcgctcttccccgattccaaatgaccat 9353757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 537 - 602
Target Start/End: Complemental strand, 9421363 - 9421298
Alignment:
Q  537 cgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatca 602  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| || || ||||| | ||||||    
T  9421363 cgaaatcgatctcattcgctttcgatcagtttgttccaattggcgttcatcttccatccgaaatca 9421298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 780 - 824
Target Start/End: Complemental strand, 9408006 - 9407962
Alignment:
Q  780 tcgtccttggttgattagagttacacaaaactcacatggaaaaac 824  Q
    |||||||||||||||||||||||| |||||||||||||| |||||    
T  9408006 tcgtccttggttgattagagttacccaaaactcacatggcaaaac 9407962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 607
Target Start/End: Original strand, 9616652 - 9616778
Alignment:
Q  484 tggtctgcactcccaatggagcttgtgagtttgatatcacaattcattgacaacgaaatcgatctcattcgttttcgatcaatttgttccaattgg---c 580  Q
    |||||||| ||||||| ||||||| | | | |||||||| ||   ||||||||| | |||||||||||||| ||||||||  | ||||||||||||   |    
T  9616652 tggtctgctctcccaagggagcttctaaatctgatatcaaaaggaattgacaacaagatcgatctcattcgctttcgatcggtatgttccaattggcgtc 9616751  T
Q  581 gctcttcctccattccaaatcaccatc 607  Q
    ||||||||||| |  ||||||||||||    
T  9616752 gctcttcctccgtctcaaatcaccatc 9616778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 780 - 823
Target Start/End: Complemental strand, 9426213 - 9426170
Alignment:
Q  780 tcgtccttggttgattagagttacacaaaactcacatggaaaaa 823  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  9426213 tcgtccttggttgattagagttacccaaaactcacatggcaaaa 9426170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 780 - 823
Target Start/End: Original strand, 9441257 - 9441300
Alignment:
Q  780 tcgtccttggttgattagagttacacaaaactcacatggaaaaa 823  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  9441257 tcgtccttggttgattagagttacccaaaactcacatggcaaaa 9441300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 581
Target Start/End: Original strand, 9625705 - 9625802
Alignment:
Q  484 tggtctgcactcccaatggagcttgtgagtttgatatcacaattcattgacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcg 581  Q
    |||||||  ||||||| ||||||| ||| | |||| || |||   ||||||| ||||||||||||||| || ||||||||  ||||||||||||||||    
T  9625705 tggtctgatctcccaaaggagcttttgaatatgatttcgcaaagaattgacatcgaaatcgatctcatacgctttcgatctgtttgttccaattggcg 9625802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 588
Target Start/End: Complemental strand, 9449202 - 9449146
Alignment:
Q  532 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcc 588  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||| |||| || |||||    
T  9449202 gacaatgaactcgatctcattcgttttcgatcagtttgttccatttggtgcacttcc 9449146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 607
Target Start/End: Original strand, 9654636 - 9654714
Alignment:
Q  532 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattgg---cgctcttcctccattccaaatcaccatc 607  Q
    |||| |||||||||| | ||||| ||||||||  ||||||||||||||   |||||||||||| | |||||||||||||    
T  9654636 gacatcgaaatcgatatgattcgctttcgatcggtttgttccaattggcgtcgctcttcctccgtcccaaatcaccatc 9654714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 780 - 823
Target Start/End: Complemental strand, 9417210 - 9417167
Alignment:
Q  780 tcgtccttggttgattagagttacacaaaactcacatggaaaaa 823  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||    
T  9417210 tcgtccttggttgatcagagttacccaaaactcacatggcaaaa 9417167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 544 - 602
Target Start/End: Complemental strand, 9344737 - 9344679
Alignment:
Q  544 gatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatca 602  Q
    ||||||||||| ||||||||  ||||||||||||||| |||||| ||||| || |||||    
T  9344737 gatctcattcgctttcgatctgtttgttccaattggcactcttcttccatccccaatca 9344679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 544 - 606
Target Start/End: Complemental strand, 9378004 - 9377942
Alignment:
Q  544 gatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccat 606  Q
    ||||||||||||||||||||  ||||||| | ||||| ||||||  ||||||||||| |||||    
T  9378004 gatctcattcgttttcgatcggtttgttcaacttggcactcttctcccattccaaatgaccat 9377942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 813
Target Start/End: Complemental strand, 9353587 - 9353538
Alignment:
Q  764 aaaccctaattcgtcgtcgtccttggttgattagagttacacaaaactca 813  Q
    ||||||||||||||||||| |||||||||||  || |||| |||||||||    
T  9353587 aaaccctaattcgtcgtcggccttggttgatacgaattacccaaaactca 9353538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 607
Target Start/End: Complemental strand, 9433772 - 9433703
Alignment:
Q  538 gaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccatc 607  Q
    ||||| ||||||||||| || |||||| |||||||| ||||||| |||||||| || | |||||| ||||    
T  9433772 gaaattgatctcattcgcttccgatcagtttgttcccattggcgttcttcctcgatccaaaatcatcatc 9433703  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 532 - 607
Target Start/End: Original strand, 20693526 - 20693601
Alignment:
Q  532 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccatc 607  Q
    |||| |||| ||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||    
T  20693526 gacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatcaccatc 20693601  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 532 - 635
Target Start/End: Original strand, 8813611 - 8813714
Alignment:
Q  532 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccatcgtcaaatttcacctatcaaattcc 631  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||||  ||||| ||||| ||||||||||| ||| | |||| | | ||||||||||    
T  8813611 gacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcattcttcttccatcccaaatcaccaccgtaacattttaaccatcaaattcc 8813710  T
Q  632 cact 635  Q
    ||||    
T  8813711 cact 8813714  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 529 - 605
Target Start/End: Complemental strand, 236023 - 235947
Alignment:
Q  529 attgacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcacca 605  Q
    |||||||||||||||||||||||||| || |||||||||||| |||||||||| ||||| ||||| || ||||||||    
T  236023 attgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccatcccgaatcacca 235947  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 634
Target Start/End: Complemental strand, 229987 - 229885
Alignment:
Q  532 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccatcgtcaaatttcacctatcaaattcc 631  Q
    ||||||||||||||| ||||||| || |||||||| |||||||||||||| ||||| ||||| ||||||||||| ||| | || | | | ||||||||||    
T  229987 gacaacgaaatcgatatcattcgcttccgatcaatctgttccaattggcgttcttcttccatcccaaatcaccaccgtgacatgttaaccatcaaattcc 229888  T
Q  632 cac 634  Q
    |||    
T  229887 cac 229885  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 532 - 602
Target Start/End: Original strand, 250616 - 250686
Alignment:
Q  532 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatca 602  Q
    |||||| |||||||||||| | | || |||||||| |||||||||||||| ||| | ||||| ||||||||    
T  250616 gacaacaaaatcgatctcaatagcttccgatcaatatgttccaattggcgttctgcttccatcccaaatca 250686  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 587
Target Start/End: Complemental strand, 4440710 - 4440665
Alignment:
Q  542 tcgatctcattcgttttcgatcaatttgttccaattggcgctcttc 587  Q
    |||||||||||||||| ||||||| ||||||||  |||||||||||    
T  4440710 tcgatctcattcgtttccgatcaacttgttccacatggcgctcttc 4440665  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 602
Target Start/End: Complemental strand, 28133137 - 28133077
Alignment:
Q  542 tcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatca 602  Q
    |||||| |||||||||| ||||| |||||| |||||||| |||||| ||||||||||||||    
T  28133137 tcgatcacattcgtttttgatcagtttgtttcaattggcactcttcttccattccaaatca 28133077  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 532 - 602
Target Start/End: Complemental strand, 28177249 - 28177179
Alignment:
Q  532 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatca 602  Q
    ||||| ||| |||||||||||||||||||||   || |||||||||| | |||||| ||||||||||||||    
T  28177249 gacaatgaactcgatctcattcgttttcgatatgttcgttccaattgacactcttcttccattccaaatca 28177179  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 542 - 602
Target Start/End: Original strand, 28177102 - 28177162
Alignment:
Q  542 tcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatca 602  Q
    ||||||||||| ||||||||||  ||||||||||||||| |||||| || | |||||||||    
T  28177102 tcgatctcatttgttttcgatctgtttgttccaattggcactcttcttcaactccaaatca 28177162  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 532 - 602
Target Start/End: Complemental strand, 28220016 - 28219946
Alignment:
Q  532 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatca 602  Q
    ||||| ||| ||||||||||||||||||||||  || ||| |||||| | |||||| || |||||||||||    
T  28220016 gacaatgaactcgatctcattcgttttcgatctgttcgtttcaattgacactcttcttctattccaaatca 28219946  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 532 - 602
Target Start/End: Complemental strand, 20514 - 20444
Alignment:
Q  532 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatca 602  Q
    ||||| ||| ||||||||||||||||||||||  || ||| |||||| | |||||| || |||||||||||    
T  20514 gacaatgaactcgatctcattcgttttcgatctgttcgtttcaattgacactcttcttctattccaaatca 20444  T

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