View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_10 (Length: 433)
Name: NF4890_low_10
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 21 - 422
Target Start/End: Complemental strand, 22439696 - 22439295
Alignment:
| Q |
21 |
atccattcctttggttcaaactatacttgcatctgttcaagcagcggcgttcaaaactttataaacgccatgacaagaaaagagcataaggagcattatt |
120 |
Q |
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| T |
22439696 |
atccattcctttggttcaaactatacttgcatctgttcaagcagcggcgttcaaaactttataaacgccgtgacaagaaaagagcataaggagcattatt |
22439597 |
T |
|
| Q |
121 |
cttggtttttgttagaagacttgtagacgacaactttctgtttaaccggagaactgattctgaaatttatttgaatctaaaatatttcctttgattggat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22439596 |
cttggtttttgttagaagacttgtagacgacaactttctgttccaccggagaactgattctgaaatttatttgcatctaaaatatttcctttgattggat |
22439497 |
T |
|
| Q |
221 |
aacaattgtatgaaataatggaattgttgttgtcagtaacgattaagattttaggaactggaagatttgtaacagtgcctgcattattctgcacagattt |
320 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22439496 |
aacaattgtacgaaataatggaattgttgttgtcagtaacgattaagattttaggaactggaagatttgtaacagtgcctgcattattctgcacagattt |
22439397 |
T |
|
| Q |
321 |
ctaccttatggattttgataggactctagggcctagtaacaatgtcaccctaagcctgtatttgaagagtttatttcattgtagtatatatgtatgcctt |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22439396 |
ctaccttatggattttgataggactctagggcctagtaacaatgtcaccctaagcctgtatttaaagagtttatttcattgtagtatatatgtatgcctt |
22439297 |
T |
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| Q |
421 |
tg |
422 |
Q |
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|| |
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| T |
22439296 |
tg |
22439295 |
T |
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