View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_11 (Length: 427)
Name: NF4890_low_11
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 9542013 - 9542431
Alignment:
| Q |
1 |
tcatgttatttttcgtaactcaccgtgatatcaacatttttgagaaataaataattttcttacaactaaaatttggacaattttttctttctctattact |
100 |
Q |
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| T |
9542013 |
tcatgttatttttcttaactcaccg-gatatcaacatttttgagaaataaatatttttcttacaactaaaatttggacaattttttctttctctattact |
9542111 |
T |
|
| Q |
101 |
aaaattttgtgtactgttagttttgatggttttggtttctatcattaggagaagctcattcaattaaagtagnnnnnnnnttgtacgaggaaaaatcaaa |
200 |
Q |
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| T |
9542112 |
aaaattttgtgtactgttagttttgatggttttg-tttctatcattaggagaagcacattcaattaaagtagaaaaaaaattgtacgaggaaaaatcaaa |
9542210 |
T |
|
| Q |
201 |
tttccaagaggttttagtttttgaggtataacatcttcatcttacttggtacacaagatttctttttcttaatataattgattaacaccaattgttttgg |
300 |
Q |
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| T |
9542211 |
tttccaagaggttttggtttttgaggtataacatcttcatcttacttggtacacaagatttctttttcttaatataattaattaacaccaattgttttgg |
9542310 |
T |
|
| Q |
301 |
ttttgtagtcattaacatatgggaaagtgcttgtacttgatggaattgttcagttgactgagaaggatgaatgtgcttaccaagagatgataactcatct |
400 |
Q |
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| T |
9542311 |
ttttgtagtcattaacatatgggaaagtgcttgtacttgatggaattgttcagttgactgagaaggatgaatgtgcttaccaagagatgataactcatct |
9542410 |
T |
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| Q |
401 |
ccctctttgttcatttcagtc |
421 |
Q |
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| T |
9542411 |
ccctctttgttcaattcagtc |
9542431 |
T |
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Back To:
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Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 307 - 400
Target Start/End: Complemental strand, 41401629 - 41401536
Alignment:
| Q |
307 |
agtcattaacatatgggaaagtgcttgtacttgatggaattgttcagttgactgagaaggatgaatgtgcttaccaagagatgataactcatct |
400 |
Q |
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| T |
41401629 |
agtcattaacatatgggaaagttctcgtacttgatgggattgttcagttgactgagaaggatgaatgtgcttaccaggagatgatagctcatct |
41401536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 14954701 - 14954745
Alignment:
| Q |
365 |
ggatgaatgtgcttaccaagagatgataactcatctccctctttg |
409 |
Q |
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| T |
14954701 |
ggatgagtgtgcgtaccaagagatgatcactcatcttcctctttg |
14954745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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