View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_12 (Length: 408)
Name: NF4890_low_12
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 39308296 - 39307937
Alignment:
| Q |
11 |
catcatcaagtttaacataatataagtaaggcttccacattaaatcaacacagaaaaccaacataatcaacactagggttttcataataataataatccc |
110 |
Q |
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| T |
39308296 |
catcatcaagtttaacataatataagtaaggcttccacattaaatcaacacagaaaaccaacataatcaacactagggttttcataataataataatccc |
39308197 |
T |
|
| Q |
111 |
aaaatgagtattgctatatcatgcgaaataattctcaagaaagctcctgaaaattaatttggccaatcaaaattgttgctttgcgcaatacacggaaaac |
210 |
Q |
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| T |
39308196 |
aaaatgagtattgctatatcatgcgaaataattctcaagaaagctcccgaaaatcaatttggccaatcaaagttgttgctttgcggaata---------- |
39308107 |
T |
|
| Q |
211 |
cagcggaatacacggtcaaaccaagacatatcagcttctctcgggacaaatttgggacaaactattcgctatgatttgtattttcctcctaaaatattgc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| |
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| T |
39308106 |
----------cacggtcaaaccaagacatatcagcttctctcgggacaaatttgggacaaactattcgctatgaatagtattttcctcccaaaatattgc |
39308017 |
T |
|
| Q |
311 |
aaagtacatcatcaagttccaaattgaaacatgtaatatccgattcttaaaattctcatactgaatccttcaccactact |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |
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| T |
39308016 |
aaagtacatcatcaagttccaaattgaaacatgtaatattcgattcttaaaattctcatactaaatccttcaccgctact |
39307937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 255
Target Start/End: Original strand, 47919185 - 47919309
Alignment:
| Q |
132 |
tgcgaaataattctcaagaaagct-cctgaaaattaatttggccaatcaaaattgttgctttgcgcaatacacggaaaaccagcggaatacacggtcaaa |
230 |
Q |
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|||||||||||||||||||||||| || |||||| |||||||| |||||||||||||||||| || ||| ||||||||||||||| |||||||| ||||| |
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| T |
47919185 |
tgcgaaataattctcaagaaagcttcccgaaaatcaatttggcaaatcaaaattgttgcttttcggaatgcacggaaaaccagcgaaatacacgttcaaa |
47919284 |
T |
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| Q |
231 |
ccaagacatatcagcttctctcggg |
255 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
47919285 |
tcaaaacatatcagcttctctcggg |
47919309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 28795583 - 28795482
Alignment:
| Q |
11 |
catcatcaagtttaacataatataagtaaggcttccacatt-----aaatcaacacagaaaaccaacataatcaacactagggttttcataataataata |
105 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
28795583 |
catcatcaagtttaacataatttaagtaaggtttccacattggaacaaatcaacacagaaaaccaacataatcaacactagggttttcatcatcataata |
28795484 |
T |
|
| Q |
106 |
at |
107 |
Q |
| |
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|| |
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|
| T |
28795483 |
at |
28795482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 28795479 - 28795429
Alignment:
| Q |
297 |
tcctaaaatattgcaaagtacatcatcaagttccaaattgaaacatgtaata |
348 |
Q |
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| T |
28795479 |
tcctaaaatattgcaaagtacatcatcaagttccaaatt-aaacatgtaata |
28795429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 28795337 - 28795301
Alignment:
| Q |
348 |
atccgattcttaaaattctcatactgaatccttcacc |
384 |
Q |
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|||||||||||||||||||||||| ||||| |||||| |
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| T |
28795337 |
atccgattcttaaaattctcataccgaatctttcacc |
28795301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 133 - 296
Target Start/End: Complemental strand, 39246183 - 39246018
Alignment:
| Q |
133 |
gcgaaataattctcaagaaagct-cctgaaaattaatttggccaatcaaaattgttgctttgcgcaatacacggaaaaccagcggaatacacggtcaaac |
231 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| | || |||||||||||||||| |||||| ||| || ||| |
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| T |
39246183 |
gcgaaataattctcacgaaagcttcctgaaaactaatttggccaatcaaaattgttgctctacggaatacacggaaaaccaagggaatatacgttccaac |
39246084 |
T |
|
| Q |
232 |
caagacatatcagc-ttctctcgggacaaatttgggacaaactattcgctatgatttgtattttcc |
296 |
Q |
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||| | |||||||| || ||||| || ||||| ||| |||| | |||||||||| | ||||||||| |
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| T |
39246083 |
caaaatatatcagctttttctcgagataaattcgggccaaattgttcgctatgaatagtattttcc |
39246018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 116 - 260
Target Start/End: Complemental strand, 10598747 - 10598608
Alignment:
| Q |
116 |
gagtattgctatatcatgcgaaa-taattctcaagaaagct-cctgaaaattaattt-ggccaatcaaaattgttgctttgcgcaatacacggaaaacca |
212 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||||||| || ||||| ||||| |||||||||||| |||||||||| ||||||||||| |
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| T |
10598747 |
gagtattgttatatcatgcaaaaataattctcaagaaagcttcccgaaaaccaattttggccaatcaaaactgttgctttg--------acggaaaacca |
10598656 |
T |
|
| Q |
213 |
gcggaatacacggtcaaaccaagacatatcagcttctctcgggacaaa |
260 |
Q |
| |
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|| ||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
10598655 |
gcagaatacacgttcaaaccaagacatatcagcttctcttgggacaaa |
10598608 |
T |
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