View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_13 (Length: 405)
Name: NF4890_low_13
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 25976221 - 25975851
Alignment:
| Q |
19 |
aaacaaatactataccaccaagttagagaattgtgtatcattaatattttgtttagacnnnnnnntggtattaattattaatgaatacttacaaacatag |
118 |
Q |
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| T |
25976221 |
aaacaaatactataccaccaagttagagaattgtgtatcattaatattttgtttagacaaaaaaatggtatta----ttaatgaatacttacaaacatag |
25976126 |
T |
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| Q |
119 |
attaaagaataacaattctttttaagagtcatcatcaatcaaattcacttatgtggattaggaaataacgaaagaaaataacataagaacgacctacgga |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25976125 |
attaaaaaataacaattctttttaagagtcatcatcaatcaaattcacttatgtggattaggaaataacgaaagaaaataacataagaacgacctacgga |
25976026 |
T |
|
| Q |
219 |
gataccaaaagtcgtaaactatattctttttcactaaaaacaaatgaatctctttataacctctaaaagtcacaaatatttttggatgcaaaagatcgac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25976025 |
gataccaaaagtcgtaaactatattctttttcactaaaaacaaatgaatctctttataacctctaaaagtcacaaatatttttggatgcaaaagatcgac |
25975926 |
T |
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| Q |
319 |
attgttttctcaacatggatgacttctatggataaagacatgcatggagttttagttttagtttctttttgcctt |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25975925 |
attgttttctcaacatggatgacttctatggataaagacatgcatagagttttagttttagtttctttttgcctt |
25975851 |
T |
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