View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_14 (Length: 400)
Name: NF4890_low_14
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 35908853 - 35909228
Alignment:
| Q |
18 |
agttcatagatcacaatttactcttaatttagttagttgcaaacatttgcttgctatccaagtaaacttcatttttagatcatcaatacaatacatgagt |
117 |
Q |
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| T |
35908853 |
agttcatagatcacaatttactcttaatttagttagttgcaaacatttgcttgttatccaagtaaacttcatttttagatcatcaatacaatacatgcgt |
35908952 |
T |
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| Q |
118 |
tttctctctcaatttcctttgatctttgatatcataatatggtatcacgagcctttcgagactgcttccgcatacttgaaggttcttgcagaatcataag |
217 |
Q |
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| T |
35908953 |
tttctctctcaatttcctttgatctttgatatcataatatggtatcatgagcttttcgagactgcttccgcatacttgaaggttcttgcagaatcataag |
35909052 |
T |
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| Q |
218 |
attttctttacatcttcgttgcaatttttcataattgctttttattcacaacaatttcttgttgattcatcgttttcttagattttatagattcttgagc |
317 |
Q |
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| T |
35909053 |
attttctttacatcttcgttgcaatttttcataattgctttttattcacaacaatttcttgttgattcatcgttttcttagattttatagattcttgagc |
35909152 |
T |
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| Q |
318 |
ttcatttcgagttttcatggcatgcaacatcaatgtttccaccagtcatgcttagagcaatgttatctctgctcct |
393 |
Q |
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| T |
35909153 |
ttcatatcgagttttcatggcatgcaacatcaatgtttccaccagtcatgcttagagcaatgttatcactgatcct |
35909228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 35910806 - 35910879
Alignment:
| Q |
82 |
aacttcatttttagatcatcaatacaatacatgagttttctctctcaatttcctttgatctttgatatcataata |
156 |
Q |
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||||||||||||| ||||||||| | ||| |||||||||||||||||||| |||||||| |||||| ||||||| |
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| T |
35910806 |
aacttcatttttaaatcatcaattccataaatgagttttctctctcaattctctttgatc-ttgatagcataata |
35910879 |
T |
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