View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4890_low_15 (Length: 389)

Name: NF4890_low_15
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4890_low_15
NF4890_low_15
[»] chr7 (8 HSPs)
chr7 (1-378)||(1300261-1300637)
chr7 (77-378)||(8658244-8658542)
chr7 (269-366)||(8666489-8666586)
chr7 (304-378)||(3146372-3146446)
chr7 (3-52)||(8658140-8658189)
chr7 (269-366)||(8672070-8672167)
chr7 (269-335)||(8645950-8646016)
chr7 (271-328)||(8653261-8653318)
[»] chr1 (2 HSPs)
chr1 (128-378)||(4679540-4679787)
chr1 (236-366)||(29464888-29465019)
[»] chr2 (1 HSPs)
chr2 (236-378)||(16658509-16658648)
[»] chr4 (1 HSPs)
chr4 (236-366)||(9336892-9337022)


Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 1300261 - 1300637
Alignment:
Q  1 tgatgatttttaaatatgctactcaaattagaataagaaaagaaaaaacccaaaacctaaacttgaatactatatatatgtttaagaacttccaaaatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  1300261 tgatgatttttaaatatgctactcaaattagaataagaaaagaaaaaaccaaaaacctaaacttcaatactctatatatgtttaagaacttccaaaatca 1300360  T
Q  101 agatatcaattgaaaagagatcctgaaaaagaagatttgggtttattctctatggcagtattgactacaagcttttccaacaagatctccagctccttga 200  Q
    ||||||| |||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  1300361 agatatccattgaaaagagatcctaaaaaa-aagatttgggtttattctcaatgccagtattgactacaagcttttccaacaaaatctccagctccttga 1300459  T
Q  201 gatgatcctcaacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttcttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1300460 gatgatcctcaacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttcttt 1300559  T
Q  301 acgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcat 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1300560 acgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaatcattcat 1300637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 77 - 378
Target Start/End: Original strand, 8658244 - 8658542
Alignment:
Q  77 tatgtttaagaacttccaaaatcaagatatcaattgaaaagagatcctgaaaaagaagatttgggtttattctctatggcagtattgactacaagctttt 176  Q
    ||||||||||||||| |||||| |||| |||||||||||||| ||||| |||||||||||||| | |||||||| ||| |||||||||||||||||||||    
T  8658244 tatgtttaagaactttcaaaatgaagacatcaattgaaaagatatcctaaaaaagaagatttgtgcttattctcaatgccagtattgactacaagctttt 8658343  T
Q  177 ccaacaagatctccagctccttgagatgatcctcaacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgc 276  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||   |||||||||| || ||||||| ||||||  | |||| ||||    
T  8658344 ccaacatgatttccagctccttcagatgatcctcaacaacatctattttctgctgt---ttgttattctcatgaagcaagtttgttgccaaggtagttgc 8658440  T
Q  277 attgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattc 376  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  8658441 attgttgatcttttccctttctccacgggagaggtttaaattaacatccttcttttttaacgcattcttcactttgtaaacacaataatccaaatcattc 8658540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 8666489 - 8666586
Alignment:
Q  269 gtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatc 366  Q
    ||||||||||||||||||||| |  |||||| | |||||||| | | ||||||||||||||||||||| || |||||||  |||||||||||| ||||    
T  8666489 gtaattgcattgttgatctttgcaatttcttgaggggagagaatcagattaacatccttcttctttaaagccttcttcatattgtaaacacaagaatc 8666586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 3146372 - 3146446
Alignment:
Q  304 ggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcat 378  Q
    ||||||||||| ||| ||||||||||||||||| ||||| ||||  ||||||||||||||||| || ||||||||    
T  3146372 ggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcat 3146446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 8658140 - 8658189
Alignment:
Q  3 atgatttttaaatatgctactcaaattagaataagaaaagaaaaaaccca 52  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  8658140 atgattttcaaatatgctactcaaattagaatacgaaaagaaaaaaccca 8658189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 8672167 - 8672070
Alignment:
Q  269 gtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatc 366  Q
    ||||||||||||||||||||| |  |||||| | |||||||| | | ||||||||  ||||||| ||| || |||||||  |||||||||||| ||||    
T  8672167 gtaattgcattgttgatctttgcaatttcttgaggggagagaatcagattaacattgttcttctctaaagcgttcttcatattgtaaacacaagaatc 8672070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 335
Target Start/End: Original strand, 8645950 - 8646016
Alignment:
Q  269 gtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttcttta 335  Q
    ||||||||||| |||||||| ||  ||||||||   ||||||||||| |||||||||||| ||||||    
T  8645950 gtaattgcattattgatcttgtcattttctttagatgagagatttaatttaacatccttcctcttta 8646016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 8653261 - 8653318
Alignment:
Q  271 aattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttc 328  Q
    ||||||||||||||||||||| ||||||| | ||||||   ||| |||||||||||||    
T  8653261 aattgcattgttgatcttttcactttcttgaggggagatgattagattaacatccttc 8653318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 128 - 378
Target Start/End: Complemental strand, 4679787 - 4679540
Alignment:
Q  128 aaagaagatttgggtttattctctatggcagtattgactacaagcttttccaacaagatctccagctccttgagatgatcctcaacaacatctattttct 227  Q
    |||||||||||| | || |||||  ||  ||| |||||| ||||||||||||||| | |||||| |||||| ||||||||||||| |||||||||||  |    
T  4679787 aaagaagatttgtgctttttctcattgctagtcttgacttcaagcttttccaacatgctctccaactccttcagatgatcctcaagaacatctatttctt 4679688  T
Q  228 gctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatcctt 327  Q
     ||||   | ||||||||||||||||||| | || |  || |||||||||| |||||||||||| ||||| | ||  ||||| |||||||||||||||||    
T  4679687 tctgt---tcgttattcttatcaagcaagttggtggccactgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatcctt 4679591  T
Q  328 cttctttaaggcattcttcactttgtaaacacaataatccaaagcattcat 378  Q
    ||||||||| |||||||| |  |||||||||||| | ||||| ||| ||||    
T  4679590 cttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcat 4679540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 366
Target Start/End: Original strand, 29464888 - 29465019
Alignment:
Q  236 ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacggga-gagatttaaattaacatccttcttcttt 334  Q
    ||||||||||||||||||||  |    | ||| |||||||||||||||||||| || ||||||| | |||| |||  | ||||||||| |||||||||||    
T  29464888 ttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttcttt 29464987  T
Q  335 aaggcattcttcactttgtaaacacaataatc 366  Q
    || | ||||||||  |||||||||||| ||||    
T  29464988 aatgtattcttcatattgtaaacacaagaatc 29465019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 378
Target Start/End: Complemental strand, 16658648 - 16658509
Alignment:
Q  236 ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttcttta 335  Q
    |||||||||||||||||||| ||||| |  || |||||||||||||||||||| ||  |||||| |  |||||| |||||||| |||||    |||||||    
T  16658648 ttgttattcttatcaagcaaacttgtggccacagtaattgcattgttgatcttctcaatttcttgagaggagagctttaaattcacatc---tttcttta 16658552  T
Q  336 aggcattcttcactttgtaaacacaataatccaaagcattcat 378  Q
    | ||||||||||  |||||||||||||||||||| ||||||||    
T  16658551 aagcattcttcatattgtaaacacaataatccaatgcattcat 16658509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 366
Target Start/End: Complemental strand, 9337022 - 9336892
Alignment:
Q  236 ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttcttta 335  Q
    ||||||||||||||||||||  |  | |  || |||||||||||||||||||| ||  |||||| | | | |||| | | ||||||||  ||||||||||    
T  9337022 ttgttattcttatcaagcaaattcatagcaacagtaattgcattgttgatcttctcaatttcttgaggcgtgagaatcagattaacattgttcttcttta 9336923  T
Q  336 aggcattcttcactttgtaaacacaataatc 366  Q
    | || |||||||  |||||||||||| ||||    
T  9336922 aagcgttcttcatattgtaaacacaagaatc 9336892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University