View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_17 (Length: 353)
Name: NF4890_low_17
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 110 - 331
Target Start/End: Original strand, 17110288 - 17110509
Alignment:
| Q |
110 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcccaagtgggtaataatataaatcaatacagttgg |
209 |
Q |
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| T |
17110288 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcctaagtgggtaataatataaatcaatacagttgg |
17110387 |
T |
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| Q |
210 |
agacgtacacacaattggccgagcttaattagttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg |
309 |
Q |
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| T |
17110388 |
agacgtacacgcaattggccgagcttaattagttaccaaacgtcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg |
17110487 |
T |
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| Q |
310 |
ttctaacactatctgatctgtg |
331 |
Q |
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| T |
17110488 |
ttctaacactatctgatctgtg |
17110509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 17110172 - 17110266
Alignment:
| Q |
17 |
actatttacatgttttcttttggtatatctcatatcaagtggtgcagatttatattcaaatagtatttacttgaactggacccactttaaaatga |
111 |
Q |
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| T |
17110172 |
actatttacatgttttcttttggtatatctcatatcaagtggtgcagatttatattcaaatagtatttacttgaactggacccactttaaaatga |
17110266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 17126147 - 17126221
Alignment:
| Q |
255 |
tgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaacactatctgatctgt |
330 |
Q |
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| T |
17126147 |
tgtgttcattgtttgcgttttttga-atttttactcttttgaactagggttgatgttctaacactatctgatctgt |
17126221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 35052192 - 35052265
Alignment:
| Q |
242 |
ttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaaca |
317 |
Q |
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| T |
35052192 |
ttaccaaacaacgtgtgttcattgtttgcg-tttttcgtatctttattcttttgaaccgga-ttgctgttctaaca |
35052265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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