View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_19 (Length: 332)
Name: NF4890_low_19
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 16208847 - 16208565
Alignment:
| Q |
19 |
aaaaaattaaccaataatatagaaaaagtagtgcgaacaattgcccccaatttactctatgtacattcgtccc----------ctcataggggtgtataa |
108 |
Q |
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| T |
16208847 |
aaaaaattaaccaataatatagaaaaagtagtgggagcaattgcccccaatttactctatgtacattcgtccctggtatgtgccttataggggtgtataa |
16208748 |
T |
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| Q |
109 |
tgggggttgagggaaaagagtgtcatgaaacattgttctaagaacaat--tgacattaaccataactacttttaaaattgcatgtatgaatgattgtgat |
206 |
Q |
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| T |
16208747 |
tggag-ttgagggaaaagagtgtcatgaaacattgttctaagaacaatattgacattaaccataactacttttaaaattgtatgtatgaataattgtgat |
16208649 |
T |
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| Q |
207 |
ttgtcgatgttgtaatttcattacattgaaagtgtatataaattatatctttgannnnnnngacaagtaatttatatgtttgag |
290 |
Q |
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| T |
16208648 |
ttgtcgatgttgtaattttattacattaaaagtgtatataaattatatctttgatttttttgacaagtaatttatatgtttgag |
16208565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 4806177 - 4806230
Alignment:
| Q |
25 |
ttaaccaataatatagaaaaagtagtgcgaacaattgcccccaatttactctat |
78 |
Q |
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| T |
4806177 |
ttaacaaataatataaaaaaaatagtgcggacaattgcccccaatttactctat |
4806230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 23405233 - 23405163
Alignment:
| Q |
13 |
aatatcaaaaaattaaccaataatatagaaaaagtagtgcgaacaattgcccccaatttactctatgtacat |
84 |
Q |
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||||||||| | ||||| |||||||||||||||||||| | |||||||||||||||| |||| ||||||| |
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| T |
23405233 |
aatatcaaatatttaacaaataatatagaaaaagtagt-agggcaattgcccccaatttcctctttgtacat |
23405163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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