View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_20 (Length: 322)
Name: NF4890_low_20
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 48166894 - 48166607
Alignment:
| Q |
17 |
atcaccaacattgccaacacaagtttcttcattgatgattctaggttcacaaaacgaaattatgtcaatttcattgttagtttatttatgacagtctaca |
116 |
Q |
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| T |
48166894 |
atcaccaacattgccaacacaagtttcttcattgatgattctaggttcacaaaacaaaattatgtcaatttcattgttagtttatttatgacaatctaca |
48166795 |
T |
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| Q |
117 |
ccattattagtggtgtatatttttcgtcnnnnnnnntcgtgaaatagactattaaacggacttaccaaaaagtcaggtcaaaccttaaaaatgagcctat |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48166794 |
ccattattagtggtgtatatttttcgtcaaaaaaaatcgtgaaatagactattaaacggacttaccaaaaagtcaggtcaaaccttaaaaatgagcctat |
48166695 |
T |
|
| Q |
217 |
ggcagactaataggacagattgaagcctaacattttcaaagcaagtcatgttcagcctagcaaagtttaacctagtctattttcacct |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48166694 |
ggcagactaataggacagattgaagcctaacattttcaaagtaagtcatgttcagcctagcaaagtttaacctagtctattttcacct |
48166607 |
T |
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