View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_21 (Length: 320)
Name: NF4890_low_21
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 42086181 - 42085886
Alignment:
| Q |
18 |
tttagcaacggttgaagtccagccaaagaaaatatcagaaataatacatagtttatggttaggttgttgggttaagatgttttggatgatgtttttgaag |
117 |
Q |
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| T |
42086181 |
tttagcaacggttgaagtccaaccaaagaaaatatcagaaataatacatagtttatggttaggttgttgggttaagatgttttggatgatgtatttgaag |
42086082 |
T |
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| Q |
118 |
gaaggttttaaggaaagagaagcttggatgagtttgatgacaagattgtaagggacagtatcagtgttttctgtgttgggtgggagattatggtcggaag |
217 |
Q |
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| T |
42086081 |
gaaggttttaaggaaagagaagcttggatgagtttgatgacaagattgtaagggacagtatcagtgttttctgtgttgggtgggagattatggtcggaag |
42085982 |
T |
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| Q |
218 |
agatgaaagggattgtgaggagattgatggaggaatttggtgggagagaggttttgagtttttggatgttgtgtggtgtgttgattatgatgatgt |
313 |
Q |
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| T |
42085981 |
agatgaaagggattgtgaggagattgatggaggaatttggtgggagagaggttttgagtttttggatgttgtgtggtgtgttgattatggtgatgt |
42085886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 81 - 306
Target Start/End: Complemental strand, 42081895 - 42081670
Alignment:
| Q |
81 |
ttgttgggttaagatgttttggatgatgtttttgaaggaaggttttaaggaaagagaagcttggatgagtttgatgacaagattgtaagggacagtatca |
180 |
Q |
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| T |
42081895 |
ttgtttggttatgatgttttggatgatgtttttgaaggatggttttaaggaaagagaagtttgtatacgtttgatgacaagattgcaaggaacagtctca |
42081796 |
T |
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| Q |
181 |
gtgttttctgtgttgggtgggagattatggtcggaagagatgaaagggattgtgaggagattgatggaggaatttggtgggagagaggttttgagttttt |
280 |
Q |
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| T |
42081795 |
atgttttctgtgttgagtgggaggttatggtcggaagaaatgaaagggattgtgaggaaattgatgtaggagttaggtgggagagaaggttgaagttttt |
42081696 |
T |
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| Q |
281 |
ggatgttgtgtggtgtgttgattatg |
306 |
Q |
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| T |
42081695 |
ggatgttgtgtggtgtgttgattatg |
42081670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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