View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_22 (Length: 319)
Name: NF4890_low_22
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 15849969 - 15850258
Alignment:
| Q |
20 |
agatctatatgtttgtgtctgatactcctatagtgcttccgaagcttgataacatagttatctctgactctgaccccatacctaagaactcagcagagtt |
119 |
Q |
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| T |
15849969 |
agatctatatgtttgtgtctgatactcctatagtgcttctgaagcttgataacatagttatctctgactctgacccaagacctcagaactctgctgagtt |
15850068 |
T |
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| Q |
120 |
tgtgtctgctactgagtttcaacattctcagcggatgttagagctgaattggcttctcaacatgttgttcaaatttaaatgcagaaccaacttaaagggc |
219 |
Q |
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| T |
15850069 |
tgtgtctgctactgagtttcaacattcttagcggatgttagagctgaattggcttctcgacatgttgttcaaatttaaatgcagaaccaacttaaagggc |
15850168 |
T |
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| Q |
220 |
aattagagactcaagttgtagtgaagactcaacctatgaagcacggacacctcttgaaccaaccgtgttacggtgtccgacattcctatg |
309 |
Q |
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| T |
15850169 |
aattagagactcaagttgtagtgaagactcaacctatgaagcacggacacctcttgaaccagccgtattacggtgtccgacactcctatg |
15850258 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 43921666 - 43921714
Alignment:
| Q |
253 |
ctatgaagcacggacacctcttgaaccaaccgtgttacggtgtccgaca |
301 |
Q |
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| T |
43921666 |
ctatgaagcacggacacctctaggactagccgtgtcacggtgtccgaca |
43921714 |
T |
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