View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_23 (Length: 304)
Name: NF4890_low_23
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 144034 - 143884
Alignment:
| Q |
16 |
atgaggcgttttccattgagggaaaatgagatgaggttaaagatcaaacatattacatatgcgagaagaaaacaacaacgaagcataa------------ |
103 |
Q |
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| T |
144034 |
atgaggcgttttccattgagggaaaatgagatgaggttaaagatcaaacatattacatatgcgagaagaaaacaacaacgaagcataagcgtgagatgct |
143935 |
T |
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| Q |
104 |
--acaacaatgatagtgtttaattcgtatagatggaagtcctattttcaca |
152 |
Q |
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| T |
143934 |
atgctacaatgatagtgtttaattcgtatagatggaagtcctattttcaca |
143884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 143822 - 143786
Alignment:
| Q |
250 |
tttcatacatgatttaatcaccagcatctgtactatg |
286 |
Q |
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| T |
143822 |
tttcatacatgatttaatcaccagcatctgtactatg |
143786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 143886 - 143852
Alignment:
| Q |
168 |
acaacggcaaagaattctacatgtgaaaatcaatt |
202 |
Q |
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| T |
143886 |
acaacggcaaagaattctacatgtgaaaatcaatt |
143852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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