View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_3 (Length: 630)
Name: NF4890_low_3
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 17 - 626
Target Start/End: Complemental strand, 14249820 - 14249211
Alignment:
| Q |
17 |
ttaattttatgggtttataatttttgttgttgtgtgtgaagtagaatatttgttagtcaaattagggttaggttattgttatttttgagtgatgaagtcc |
116 |
Q |
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| T |
14249820 |
ttaattttatgggtttataatttttgttgttgtgtgtgaagtagaatatttgttagtcaaattagggttaggttattgttatttttgagtgatgaagtcc |
14249721 |
T |
|
| Q |
117 |
ttgaattgaggagttcaattagagttagggttttcctaggtgggaaaactgattagggttttagaatatggtgaattatttgtttagtgattgaaggaag |
216 |
Q |
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| T |
14249720 |
ttgaattgaggagttcaattagagttagggttttcctaggtgggaaaactgattagggttttagaagatggtgaattatttgtttagtgattgaaggaag |
14249621 |
T |
|
| Q |
217 |
gaaagcatatggatgatgaataactagtgattgaagcttgattggtatgcaaatgcgagcataatggaacagaatggaatgtgaagatcgaaccgggagt |
316 |
Q |
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| T |
14249620 |
gaaagcatatggatgatgaataactagtgattgaagcttgattggtatgcaaatgcgagcgtaatggaacagaatggaatgtgaagatcgaaccgggagt |
14249521 |
T |
|
| Q |
317 |
gatgagttgagttgttgcttctgtttctttttcctggtgggttttgaatttttatgacttttactttcctgattgagagtgaaagtttgggtattcatat |
416 |
Q |
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| T |
14249520 |
gatgagttgagttgttgcttctgtttctttttcctggtgggttttgaatttttatgacttttactttcctgattgagagtgaaagtttgggtattcatat |
14249421 |
T |
|
| Q |
417 |
catagacttaagttaataagcaaaatgtgttaactgatgatgaattattgctccaattttattggagtttgattactttcagaatttcatgcttctttgc |
516 |
Q |
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| T |
14249420 |
catagacttaagttaatgagcaaaatgtgttaactgatgatgaattattgctccaattttattggagtttgattattttcagaatttcatgcttctttgc |
14249321 |
T |
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| Q |
517 |
ctccaattgagcattattgaagggattggggtccttttgaagtggccatggttaggaatttggcatagctgttggtgagcttttgccttactttgttctt |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14249320 |
ctccaattgagcattattgaagggattggggtccttttgaagtggccatggttaggaatttggcatggctgttggtgagcttttgccttactttgttctt |
14249221 |
T |
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| Q |
617 |
catctcactc |
626 |
Q |
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| T |
14249220 |
catttcactc |
14249211 |
T |
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