View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_31 (Length: 237)
Name: NF4890_low_31
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 47038254 - 47038026
Alignment:
| Q |
1 |
cggtgctagagttgatgctcttcaagcggctcttgaagcttcttctcgttctgattccgatcaattcaacgctgatgtgaaacctgatttgaacaagttt |
100 |
Q |
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| T |
47038254 |
cggtgctagagttgatgctcttcaagcggctcttcaagcttcttctcgttctgattccgatcaattcaacgctgatgtgaaacctgatttgaacaagttt |
47038155 |
T |
|
| Q |
101 |
ccagaacctgaagattattaatgctttttcacttagaggtttaatattattgatatgatacttagtttctctctgtaatctttaatatccatcatctatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47038154 |
ccagaacctgaagattattaatgctttttcacttagaggtttaatattattgatatgatacttagtttctctctgtaatctttaatatccatcatctatt |
47038055 |
T |
|
| Q |
201 |
aatcaacccaatattttgttatgatgatg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47038054 |
aatcaacccaatattttgttatgatgatg |
47038026 |
T |
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