View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_32 (Length: 237)
Name: NF4890_low_32
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31936477 - 31936255
Alignment:
| Q |
1 |
cccccatcataagtttctgaaacagcaacaccttcatttcttgcaatgtttgtagcagtgttatgtttgatgaaaccagcatcctcannnnnnngggcag |
100 |
Q |
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| T |
31936477 |
cccccatcataagtttctgaaacagcaacaccttcatttcttgcaatgtttgtagcagtgttatgtttgatgaaaccagcatcctcatttttttgggcag |
31936378 |
T |
|
| Q |
101 |
cagaagtcatgagagaagctggcccatcttttctagtctggccaaatgttctgtattctgcagattgcatggtagcagcatctcttggtgcaatgggttg |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31936377 |
cagaagtcatgagagaagcaggcccatcttttctagtctggccaaatgttctatattctgcagattgcatggtagcagcatctcttggtgcaatgggttg |
31936278 |
T |
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| Q |
201 |
tgatgataactcaccagacacat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
31936277 |
tgatgataactcaccagacacat |
31936255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 31933490 - 31933283
Alignment:
| Q |
14 |
tttctgaaacagcaacaccttcatttcttgcaatgtttgtagcagtgttatgtttgatgaaaccagcatcctcannnnnnngggcagcagaagtcatgag |
113 |
Q |
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||||||||||||||||||||||||||||||| || ||||| |||||||||| | |||||||||||||||||| | ||||||||||||||||| |
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| T |
31933490 |
tttctgaaacagcaacaccttcatttcttgctatatttgttgcagtgttattatcaatgaaaccagcatcctcattcttttgagcagcagaagtcatgag |
31933391 |
T |
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| Q |
114 |
agaagctggcccatcttttctagtctggccaaatgttctgtattctgcagattgcatggtagcagcatctcttggtgcaatgggttgtgatgataactca |
213 |
Q |
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||||| ||||||||||||| || ||| | |||||||| | |||||| ||||||||||| |||||||||||||||||||| || ||||||||||| ||| |
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| T |
31933390 |
tgaagcaggcccatcttttcgagcatggtccaatgttctatcttctgctgattgcatggttgcagcatctcttggtgcaataggctgtgatgataaatca |
31933291 |
T |
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| Q |
214 |
ccagacac |
221 |
Q |
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|||||||| |
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| T |
31933290 |
ccagacac |
31933283 |
T |
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