View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_34 (Length: 228)
Name: NF4890_low_34
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 12178130 - 12177918
Alignment:
| Q |
8 |
cctcatcctttgacatagcttttgggatgagagtacatcggaaaaatcaaaataattagtattggccttgtgggttgcaattttgaattgattcatgtgt |
107 |
Q |
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| T |
12178130 |
cctcatcctttgacctagcttttgggatgagagtacaaaggaaaaaccaaaataattcgtatcggccttatgggttgcaattttgaattgattcatgtgt |
12178031 |
T |
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| Q |
108 |
ggatgaatcgtatcaagcatgattcgattcaaactaatttgattcgtatcactatttctctctgactttgatttttggcttagtgattcgattcccatga |
207 |
Q |
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| T |
12178030 |
tgatgaatcgtatcaagcatgattcgattcaaactaatttgattcgtatcaatatttctctcttactttggtttttggcgtagtgattcgattcacatga |
12177931 |
T |
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| Q |
208 |
ttagtgaatcgta |
220 |
Q |
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| T |
12177930 |
ttagtgaatcgta |
12177918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 25379582 - 25379726
Alignment:
| Q |
84 |
gcaattttgaattgattcatgtgtggatgaatcgtatcaagcatgattcgattcaaactaatttgattcgtatcactatttctctctgactttgattttt |
183 |
Q |
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| T |
25379582 |
gcaattttgaatcaattcatgtattgatgaatcgtatcattcatgattcgattcaaaatattttgatttgtatcactatttctctctgactttagttttt |
25379681 |
T |
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| Q |
184 |
ggcttagtgattcgattcccatgattagtgaatcgtatcaatctt |
228 |
Q |
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| T |
25379682 |
ggcttagggattcgattcacatgattagtgaatcgtatcaatctt |
25379726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 12154367 - 12154223
Alignment:
| Q |
82 |
ttgcaattttgaattgattcatgtgtggatgaatcgtatcaagcatgattcgattcaaactaatttgattcgtatcactatttctctctgactttg-att |
180 |
Q |
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| T |
12154367 |
ttgcaatttcgaatcgattcatatattggtgaatcgtatcatgcatgattagattcaaactattttgatttgtatcattgtttctctctgactttgtttt |
12154268 |
T |
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| Q |
181 |
tttggcttagtgattcgattcccatgattagtgaatcgtatcaat |
225 |
Q |
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| T |
12154267 |
tttgtcttagtgattcgattcacatgatcagtgaatcatatcaat |
12154223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 16655971 - 16656087
Alignment:
| Q |
113 |
aatcgtatcaagcatgattcgattcaaactaatttgattcgtatcactatttctctctgactttgatttttggcttagtga-ttcgattcccatgattag |
211 |
Q |
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| T |
16655971 |
aatcgtatcatggttgattcgattcaatctattttgattcgtatcactgtttctcccaggctttggtttttggcttgatgatttcgatacacttgattag |
16656070 |
T |
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| Q |
212 |
tgaatcgtatcaatctt |
228 |
Q |
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| T |
16656071 |
tgaatcgtatcaatctt |
16656087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 6644149 - 6644076
Alignment:
| Q |
111 |
tgaatcgtatcaagcatgattcgattcaaactaatttgattcgtatcactatttctctctgactttgatttttg |
184 |
Q |
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| T |
6644149 |
tgaatcgcatcacgtatgattcgattcaaactattttgattcgtataattgtttctatctgactttgatttttg |
6644076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 17979785 - 17979863
Alignment:
| Q |
146 |
ttgattcgtatcactatttctctctgactttgatttttggcttagtgattcgattcccatgattagtgaatcgtatcaa |
224 |
Q |
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| T |
17979785 |
ttgattcgtattactgtttctctttggttttggtttttggcttgttgattcgattcacatgattattgaatcatatcaa |
17979863 |
T |
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