View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4890_low_35 (Length: 228)

Name: NF4890_low_35
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4890_low_35
NF4890_low_35
[»] chr1 (4 HSPs)
chr1 (1-222)||(31527824-31528045)
chr1 (1-222)||(51825227-51825448)
chr1 (1-222)||(32591886-32592107)
chr1 (1-222)||(37031217-37031438)
[»] chr3 (6 HSPs)
chr3 (1-222)||(49208719-49208940)
chr3 (1-222)||(49188706-49188927)
chr3 (1-222)||(49213559-49213780)
chr3 (1-222)||(49203543-49203764)
chr3 (12-222)||(49192442-49192652)
chr3 (120-222)||(29622867-29622969)
[»] chr8 (1 HSPs)
chr8 (6-222)||(26757085-26757301)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31528045 - 31527824
Alignment:
Q  1 cggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatga 100  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||| ||| ||||||||| | ||    
T  31528045 cggtgaactacaccttcgaagttcaagccatgagtgccgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcagga 31527946  T
Q  101 aagcctcctcaaatacgctaaactgatttcccctcatgataaactctcgaaccacgttaaggaactcgtccagggaatcatcgaaggtgagacacgtgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||    
T  31527945 aagcctcctcaaatacgctaaactgatttcccctcatgataaactctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtc 31527846  T
Q  201 ctcgctgcttcgatgaccatgg 222  Q
    ||||||||||||||||||||||    
T  31527845 ctcgctgcttcgatgaccatgg 31527824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 51825448 - 51825227
Alignment:
Q  1 cggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatga 100  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||| | ||    
T  51825448 cggtgaactacaccttcgaagttcaagccatgagtgccgaaaaactgcctttcgttcttcctgcggtcttcacaattggtcctcgtgttgacgatcacga 51825349  T
Q  101 aagcctcctcaaatacgctaaactgatttcccctcatgataaactctcgaaccacgttaaggaactcgtccagggaatcatcgaaggtgagacacgtgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||    
T  51825348 aagcctcctcaaatacgctaaactgatttcccctcatgataaactctcgaaccacgtcaaggaactcgttcaaggaatcattgaaggtgagacacgtgtc 51825249  T
Q  201 ctcgctgcttcgatgaccatgg 222  Q
    ||||||||||||||||||||||    
T  51825248 ctcgctgcttcgatgaccatgg 51825227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32591886 - 32592107
Alignment:
Q  1 cggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| ||| ||||| ||| | ||    
T  32591886 cggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgatgatcagga 32591985  T
Q  101 aagcctcctcaaatacgctaaactgatttcccctcatgataaactctcgaaccacgttaaggaactcgtccagggaatcatcgaaggtgagacacgtgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| || |||||||| ||||| ||||||||||||    
T  32591986 aagcctcctcaaatacgctaaactgatttcccctcatgataaactctcgaatcatgtcaaggaactcgttcaaggaatcattgaaggggagacacgtgtc 32592085  T
Q  201 ctcgctgcttcgatgaccatgg 222  Q
    ||||||||||||||||||||||    
T  32592086 ctcgctgcttcgatgaccatgg 32592107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37031438 - 37031217
Alignment:
Q  1 cggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatga 100  Q
    |||| ||||| ||||||||||||||||| ||||| || || ||||| ||||| |||||||| || |||||||| ||||||| ||| || || ||| | ||    
T  37031438 cggtaaactacaccttcgaagttcaagctatgagcgcggagaaacttccttttgttctccccgctgtcttcactattggtcctcgtgtggatgataagga 37031339  T
Q  101 aagcctcctcaaatacgctaaactgatttcccctcatgataaactctcgaaccacgttaaggaactcgtccagggaatcatcgaaggtgagacacgtgtc 200  Q
    |||||| ||||||||||| ||||| ||||| || |||| || || ||| || || ||||| ||||| || || |||||||||||||| ||||||||||||    
T  37031338 aagccttctcaaatacgccaaacttatttcaccgcatgctagacactccaatcatgttaatgaacttgttcaaggaatcatcgaaggggagacacgtgtc 37031239  T
Q  201 ctcgctgcttcgatgaccatgg 222  Q
    ||||||||||| ||||| ||||    
T  37031238 ctcgctgcttccatgacgatgg 37031217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49208940 - 49208719
Alignment:
Q  1 cggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatga 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| ||| ||||||||| | ||    
T  49208940 cggtgaactacaccttcgaagttcaagccatgagtgctgaaaaactccctttcgtcctccctgccgtcttcacaatcggtcctcgtgttgacgattacga 49208841  T
Q  101 aagcctcctcaaatacgctaaactgatttcccctcatgataaactctcgaaccacgttaaggaactcgtccagggaatcatcgaaggtgagacacgtgtc 200  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||| || |||||||| ||||| || || |||||||||||||| ||||||||||||    
T  49208840 aagcctcctcaaatatgccaaactaatttcccctcatgataaactctccaatcacgttaatgaacttgttcaaggaatcatcgaaggcgagacacgtgtc 49208741  T
Q  201 ctcgctgcttcgatgaccatgg 222  Q
    |||| |||||| ||||| ||||    
T  49208740 ctcgttgcttcaatgacgatgg 49208719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49188927 - 49188706
Alignment:
Q  1 cggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatga 100  Q
    |||| ||||| ||||| ||||||||||| |||||||| || ||||| ||||| |||||||| ||||||||||||||||||| ||| ||||||||| | ||    
T  49188927 cggtaaactacacctttgaagttcaagctatgagtgccgagaaacttccttttgttctccccgccgtcttcacaattggtcctcgtgttgacgatcagga 49188828  T
Q  101 aagcctcctcaaatacgctaaactgatttcccctcatgataaactctcgaaccacgttaaggaactcgtccagggaatcatcgaaggtgagacacgtgtc 200  Q
    |||||| ||||||||||| ||||| ||||| |||||||||  || ||| || |||||||| |||||||| || |||||||||||||| ||||||||||||    
T  49188827 aagccttctcaaatacgccaaacttatttcacctcatgatcgacactccaatcacgttaatgaactcgttcaaggaatcatcgaaggggagacacgtgtc 49188728  T
Q  201 ctcgctgcttcgatgaccatgg 222  Q
    ||||||||||| ||||||||||    
T  49188727 ctcgctgcttccatgaccatgg 49188706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49213780 - 49213559
Alignment:
Q  1 cggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatga 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| || |||| ||| ||||||||| | ||    
T  49213780 cggtgaactataccttcgaagttcaagccatgagtgccgaaaaactccctttcgttctccctgctgtcttcactatcggtcctcgtgttgacgatcagga 49213681  T
Q  101 aagcctcctcaaatacgctaaactgatttcccctcatgataaactctcgaaccacgttaaggaactcgtccagggaatcatcgaaggtgagacacgtgtc 200  Q
    |||||||||||||||||| ||||| ||||| || ||||||| || ||| || || ||||| ||||| || || |||||||| ||||||||||||||||||    
T  49213680 aagcctcctcaaatacgccaaacttatttcaccccatgatagacactccaatcatgttaatgaacttgttcaaggaatcattgaaggtgagacacgtgtc 49213581  T
Q  201 ctcgctgcttcgatgaccatgg 222  Q
    || ||||| || ||||| ||||    
T  49213580 ctagctgcctccatgactatgg 49213559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49203764 - 49203543
Alignment:
Q  1 cggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatga 100  Q
    |||| ||||| ||||||||||||||||| |||||||| || ||||| ||||| |||||||||||||| ||||| ||||||| ||| ||||||||| | ||    
T  49203764 cggtaaactacaccttcgaagttcaagctatgagtgccgagaaacttccttttgttctccctgccgttttcactattggtcctcgtgttgacgatcagga 49203665  T
Q  101 aagcctcctcaaatacgctaaactgatttcccctcatgataaactctcgaaccacgttaaggaactcgtccagggaatcatcgaaggtgagacacgtgtc 200  Q
    |||||| ||||||||||| ||||| ||||| || ||||||  |||||| || || ||||| ||||| || || |||||||| ||||| || ||||||||     
T  49203664 aagccttctcaaatacgccaaacttatttcaccacatgatcgactctccaatcatgttaatgaacttgttcaaggaatcattgaaggggaaacacgtgta 49203565  T
Q  201 ctcgctgcttcgatgaccatgg 222  Q
    || |||||||| ||||||||||    
T  49203564 ctggctgcttccatgaccatgg 49203543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 49192652 - 49192442
Alignment:
Q  12 accttcgaagttcaagccatgagtgctgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatgaaagcctcctca 111  Q
    ||||| ||||||||||| ||||| || || ||||| ||||| |||||||| || |||||||| || |||| ||| || || ||| | |||||||| ||||    
T  49192652 acctttgaagttcaagcaatgagcgcagagaaacttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagccttctca 49192553  T
Q  112 aatacgctaaactgatttcccctcatgataaactctcgaaccacgttaaggaactcgtccagggaatcatcgaaggtgagacacgtgtcctcgctgcttc 211  Q
    ||||||| ||||| ||||| || || ||||||||||| || || |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||    
T  49192552 aatacgccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatc 49192453  T
Q  212 gatgaccatgg 222  Q
     ||||||||||    
T  49192452 aatgaccatgg 49192442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 29622867 - 29622969
Alignment:
Q  120 aaactgatttcccctcatgataaactctcgaaccacgttaaggaactcgtccagggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgacca 219  Q
    ||||| |||||||| || ||||||||||| || ||||| || ||||| || ||||||| ||||||||||||||||| ||||||||| ||||| ||||| |    
T  29622867 aaactaatttccccacacgataaactctcaaatcacgtcaatgaacttgttcagggaaacatcgaaggtgagacacatgtcctcgcagcttccatgacta 29622966  T
Q  220 tgg 222  Q
    |||    
T  29622967 tgg 29622969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 26757301 - 26757085
Alignment:
Q  6 aactataccttcgaagttcaagccatgagtgctgaaaaactgcctttcgttctccctgccgtcttcacaattggtcgtcgcgttgacgatgatgaaagcc 105  Q
    ||||| |||||| |||||||||| ||||||||||||||||| || ||||||||||| || || ||||| || |||| ||| || |||||| |||||||||    
T  26757301 aactacaccttcaaagttcaagcaatgagtgctgaaaaactcccattcgttctccccgctgtgttcactataggtcctcgtgtggacgatcatgaaagcc 26757202  T
Q  106 tcctcaaatacgctaaactgatttcccctcatgataaactctcgaaccacgttaaggaactcgtccagggaatcatcgaaggtgagacacgtgtcctcgc 205  Q
    | ||||||||||| ||||| ||||| |  ||||||| || ||| || |||||||| ||||| || || |||||||||||| | |||||||||||||||||    
T  26757201 ttctcaaatacgccaaactaatttcacagcatgatagacactccaatcacgttaatgaacttgttcaaggaatcatcgaaagcgagacacgtgtcctcgc 26757102  T
Q  206 tgcttcgatgaccatgg 222  Q
    |||||| ||||| ||||    
T  26757101 tgcttccatgactatgg 26757085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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