View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4890_low_38 (Length: 214)

Name: NF4890_low_38
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4890_low_38
NF4890_low_38
[»] chr6 (3 HSPs)
chr6 (127-197)||(32525252-32525322)
chr6 (83-122)||(32525190-32525229)
chr6 (30-85)||(10886968-10887023)
[»] scaffold1905 (1 HSPs)
scaffold1905 (30-86)||(657-713)
[»] chr7 (3 HSPs)
chr7 (30-83)||(40299965-40300018)
chr7 (32-85)||(33507886-33507939)
chr7 (33-83)||(22660602-22660652)
[»] chr4 (6 HSPs)
chr4 (30-81)||(33077171-33077222)
chr4 (46-83)||(13114192-13114229)
chr4 (38-73)||(52773535-52773570)
chr4 (38-73)||(55549444-55549479)
chr4 (30-76)||(38174166-38174212)
chr4 (30-76)||(52018270-52018316)
[»] chr8 (4 HSPs)
chr8 (38-83)||(43524599-43524644)
chr8 (38-78)||(42860561-42860601)
chr8 (38-73)||(45100410-45100445)
chr8 (30-76)||(15057321-15057367)
[»] chr5 (7 HSPs)
chr5 (38-83)||(23648445-23648490)
chr5 (38-83)||(23810082-23810127)
chr5 (30-85)||(42804073-42804128)
chr5 (41-83)||(29615755-29615797)
chr5 (30-73)||(13592319-13592362)
chr5 (30-76)||(7651604-7651650)
chr5 (30-76)||(31007798-31007844)
[»] chr1 (5 HSPs)
chr1 (30-83)||(47296897-47296950)
chr1 (31-73)||(29920005-29920047)
chr1 (30-83)||(17675596-17675649)
chr1 (38-73)||(37690683-37690718)
chr1 (38-73)||(51493858-51493893)
[»] chr3 (4 HSPs)
chr3 (30-85)||(4873439-4873494)
chr3 (30-94)||(29702286-29702350)
chr3 (38-73)||(51998632-51998667)
chr3 (127-161)||(40097247-40097281)
[»] chr2 (3 HSPs)
chr2 (38-87)||(36527464-36527513)
chr2 (38-73)||(14383622-14383657)
chr2 (38-73)||(44280756-44280791)


Alignment Details
Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 32525252 - 32525322
Alignment:
Q  127 tgatgtagcaaaataccacagtttcaagctgttttacatctcagttggtaatcataggttagacggttcat 197  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32525252 tgatgtaacaaaataccacagtttcaagctgttttacatctcagttggtaatcataggttagacagttcat 32525322  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 32525190 - 32525229
Alignment:
Q  83 taagagagaaacatgggatcaattgatgatatagaaagat 122  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32525190 taagagagaaacatgggatcaattgatgatatagaaagat 32525229  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 10886968 - 10887023
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcacttggtctaa 85  Q
    ||||||| |||||||||||||||  |||||||||||| ||||||||| | ||||||    
T  10886968 tacaatggttcaacatgttgaattgcaaattcaacatcccattgcacatagtctaa 10887023  T

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Target: scaffold1905 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold1905
Description:

Target: scaffold1905; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 657 - 713
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcacttggtctaag 86  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  657 tacaatggttcaacatgttgaatggcaaattcaacatgccattgcacttggtctaag 713  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 40300018 - 40299965
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcacttggtct 83  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  40300018 tacaatggttcaacatgttgaatggcaaattcaacatgccattgcacttggtct 40299965  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 33507939 - 33507886
Alignment:
Q  32 caatgattcaacatgttgaatgacaaattcaacatgccattgcacttggtctaa 85  Q
    |||||||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  33507939 caatgattcaacatgttgaatgacactttcaacaagccattgcacttggtctaa 33507886  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 22660602 - 22660652
Alignment:
Q  33 aatgattcaacatgttgaatgacaaattcaacatgccattgcacttggtct 83  Q
    |||| |||||||||||||||  |||||||||||| ||||||||||||||||    
T  22660602 aatggttcaacatgttgaattgcaaattcaacatcccattgcacttggtct 22660652  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 33077222 - 33077171
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcacttggt 81  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  33077222 tacaatgattcaacatgttgaatggcaaattcaacatgtcattgcacttggt 33077171  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 13114192 - 13114229
Alignment:
Q  46 gttgaatgacaaattcaacatgccattgcacttggtct 83  Q
    |||||||| |||||||||||||||||||||||||||||    
T  13114192 gttgaatggcaaattcaacatgccattgcacttggtct 13114229  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 52773535 - 52773570
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattg 73  Q
    |||||||||||||||| |||||||||||||||||||    
T  52773535 ttcaacatgttgaatggcaaattcaacatgccattg 52773570  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 55549479 - 55549444
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattg 73  Q
    |||||||||||||||| |||||||||||||||||||    
T  55549479 ttcaacatgttgaatggcaaattcaacatgccattg 55549444  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 38174166 - 38174212
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcac 76  Q
    ||||||| |||||||||||||||  |||||||||||| |||||||||    
T  38174166 tacaatggttcaacatgttgaattgcaaattcaacattccattgcac 38174212  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 52018270 - 52018316
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcac 76  Q
    ||||||| |||||||||||||||  |||||||||||| |||||||||    
T  52018270 tacaatggttcaacatgttgaattgcaaattcaacatcccattgcac 52018316  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 43524644 - 43524599
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattgcacttggtct 83  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  43524644 ttcaacatgttgaatggcaaattcaacatgccattgcacttggtct 43524599  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 42860561 - 42860601
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattgcactt 78  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  42860561 ttcaacatgttgaatggcaaattcaacatgccattgcactt 42860601  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 45100445 - 45100410
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattg 73  Q
    |||||||||||||||| |||||||||||||||||||    
T  45100445 ttcaacatgttgaatggcaaattcaacatgccattg 45100410  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 15057321 - 15057367
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcac 76  Q
    ||||||| |||||||||||||||  |||||||||||| |||||||||    
T  15057321 tacaatggttcaacatgttgaattgcaaattcaacattccattgcac 15057367  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 23648490 - 23648445
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattgcacttggtct 83  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  23648490 ttcaacatgttgaatggcaaattcaacatgccattgcacttggtct 23648445  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 23810082 - 23810127
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattgcacttggtct 83  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  23810082 ttcaacatgttgaatggcaaattcaacatgccattgcacttggtct 23810127  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 42804128 - 42804073
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcacttggtctaa 85  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||| ||||||||    
T  42804128 tacaatgattcaacatgttgaattgcaaattcaacatcccattgcacatggtctaa 42804073  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 29615797 - 29615755
Alignment:
Q  41 aacatgttgaatgacaaattcaacatgccattgcacttggtct 83  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  29615797 aacatgttgaatggcaaattcaacatgccattgcacttggtct 29615755  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 13592362 - 13592319
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattg 73  Q
    ||||||| |||||||||||||||| |||||||||||||||||||    
T  13592362 tacaatggttcaacatgttgaatggcaaattcaacatgccattg 13592319  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 7651604 - 7651650
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcac 76  Q
    ||||||| |||||||||||||||  |||||||||||| |||||||||    
T  7651604 tacaatggttcaacatgttgaattgcaaattcaacatcccattgcac 7651650  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 31007844 - 31007798
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcac 76  Q
    ||||||| |||||||||||||||  |||||||||||| |||||||||    
T  31007844 tacaatggttcaacatgttgaattgcaaattcaacattccattgcac 31007798  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 47296950 - 47296897
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcacttggtct 83  Q
    |||||||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  47296950 tacaatgattcaacatgttgaatgacactttcaacaagccattgcacttggtct 47296897  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 29920005 - 29920047
Alignment:
Q  31 acaatgattcaacatgttgaatgacaaattcaacatgccattg 73  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  29920005 acaatggttcaacatgttgaatggcaaattcaacatgccattg 29920047  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 17675649 - 17675596
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcacttggtct 83  Q
    |||||||||||||||||||||||| ||  || |||| |||||||||||||||||    
T  17675649 tacaatgattcaacatgttgaatggcacttttaacaagccattgcacttggtct 17675596  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 37690718 - 37690683
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattg 73  Q
    |||||||||||||||| |||||||||||||||||||    
T  37690718 ttcaacatgttgaatggcaaattcaacatgccattg 37690683  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 51493893 - 51493858
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattg 73  Q
    |||||||||||||||| |||||||||||||||||||    
T  51493893 ttcaacatgttgaatggcaaattcaacatgccattg 51493858  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 4873494 - 4873439
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcacttggtctaa 85  Q
    |||||||||||||||||||||||| ||  ||||||| ||||||| |||||||||||    
T  4873494 tacaatgattcaacatgttgaatggcactttcaacaagccattgtacttggtctaa 4873439  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 29702286 - 29702350
Alignment:
Q  30 tacaatgattcaacatgttgaatgacaaattcaacatgccattgcacttggtctaagagagaaac 94  Q
    ||||||| |||||||||||||||  |||||||||||| ||||||||| | |||||| ||| ||||    
T  29702286 tacaatggttcaacatgttgaattgcaaattcaacatcccattgcacatagtctaatagataaac 29702350  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 51998667 - 51998632
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattg 73  Q
    |||||||||||||||| |||||||||||||||||||    
T  51998667 ttcaacatgttgaatggcaaattcaacatgccattg 51998632  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 40097281 - 40097247
Alignment:
Q  127 tgatgtagcaaaataccacagtttcaagctgtttt 161  Q
    ||||||||||||||||||||||||||||| |||||    
T  40097281 tgatgtagcaaaataccacagtttcaagcagtttt 40097247  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 36527464 - 36527513
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattgcacttggtctaaga 87  Q
    |||||||||||||||| ||||||||||||||||||| |  ||||||||||    
T  36527464 ttcaacatgttgaatggcaaattcaacatgccattgtaaatggtctaaga 36527513  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 14383622 - 14383657
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattg 73  Q
    |||||||||||||||| |||||||||||||||||||    
T  14383622 ttcaacatgttgaatggcaaattcaacatgccattg 14383657  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 44280756 - 44280791
Alignment:
Q  38 ttcaacatgttgaatgacaaattcaacatgccattg 73  Q
    |||||||||||||||| |||||||||||||||||||    
T  44280756 ttcaacatgttgaatggcaaattcaacatgccattg 44280791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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