View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_39 (Length: 213)
Name: NF4890_low_39
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_39 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 24679924 - 24680095
Alignment:
| Q |
23 |
tatcataggaacgagtgaagcgagggacgaaagcatcttagtgaaaggataggatagccaaagcattcatattctatgcttaagtaaagtcctcactgcc |
122 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24679924 |
tatcataggaaagagtgaagcgagggacgaaagcatcttagtgaaaggataggatagccaaagcattcatattctatgcttaagtaaagtcctcactgcc |
24680023 |
T |
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| Q |
123 |
acgccattcacttctttctacgctcaaagatcacaggcttgttagcgatgtggagtcagattcctaccgacc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24680024 |
acgccattcacttctttctacgctcaaagatcacaggcttgttagcgatgtggagtcagattcctaccgacc |
24680095 |
T |
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Target: scaffold0300 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 198 - 369
Alignment:
| Q |
23 |
tatcataggaacgagtgaagcgagggacgaaagcatcttagtgaaaggataggatagccaaagcattcatattctatgcttaagtaaagtcctcactgcc |
122 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
198 |
tatcataggaaagagtgaagcgagggacgaaagcatcttagtgaaaggataggatagccaaagcattcatattctatgcttaagtaaagtcctcactgcc |
297 |
T |
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| Q |
123 |
acgccattcacttctttctacgctcaaagatcacaggcttgttagcgatgtggagtcagattcctaccgacc |
194 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
298 |
acgccattcacttctttctacgctaaaagatcacaggcttgttagcgatgtggagtcagattcctacagacc |
369 |
T |
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