View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4890_low_4 (Length: 608)

Name: NF4890_low_4
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4890_low_4
NF4890_low_4
[»] chr6 (17 HSPs)
chr6 (17-382)||(33968424-33968789)
chr6 (378-568)||(33968054-33968245)
chr6 (17-191)||(12794019-12794194)
chr6 (74-182)||(20701814-20701922)
chr6 (97-191)||(32935342-32935435)
chr6 (123-192)||(9224052-9224120)
chr6 (99-192)||(26216021-26216112)
chr6 (103-183)||(20499910-20499990)
chr6 (17-171)||(16510323-16510478)
chr6 (71-182)||(26534727-26534839)
chr6 (71-182)||(21266074-21266183)
chr6 (230-264)||(13098498-13098532)
chr6 (136-182)||(32316392-32316438)
chr6 (97-181)||(3117478-3117562)
chr6 (17-57)||(13098699-13098739)
chr6 (71-182)||(21264947-21265056)
chr6 (143-171)||(23592247-23592275)
[»] chr5 (22 HSPs)
chr5 (21-382)||(39183994-39184359)
chr5 (63-382)||(8730868-8731190)
chr5 (17-330)||(24072128-24072442)
chr5 (17-177)||(31721582-31721742)
chr5 (17-173)||(7392051-7392207)
chr5 (17-182)||(8297373-8297538)
chr5 (17-181)||(17854079-17854244)
chr5 (17-181)||(7195251-7195414)
chr5 (73-182)||(39024461-39024569)
chr5 (71-182)||(13954245-13954355)
chr5 (71-182)||(14302441-14302552)
chr5 (123-182)||(22675335-22675394)
chr5 (17-182)||(27712981-27713139)
chr5 (71-176)||(33258899-33259004)
chr5 (74-181)||(698323-698430)
chr5 (285-382)||(17853862-17853960)
chr5 (229-324)||(23426452-23426547)
chr5 (74-172)||(34378060-34378158)
chr5 (123-171)||(25992018-25992066)
chr5 (220-265)||(22675250-22675295)
chr5 (123-172)||(29087492-29087541)
chr5 (229-265)||(27713188-27713224)
[»] chr1 (28 HSPs)
chr1 (21-382)||(17033495-17033860)
chr1 (21-363)||(42374072-42374417)
chr1 (54-363)||(46603334-46603634)
chr1 (17-382)||(38544546-38544913)
chr1 (8-166)||(4651677-4651834)
chr1 (17-182)||(50589218-50589381)
chr1 (75-192)||(19598599-19598715)
chr1 (11-173)||(24658829-24658990)
chr1 (74-181)||(31585772-31585879)
chr1 (75-181)||(46814479-46814585)
chr1 (74-181)||(46692831-46692938)
chr1 (75-181)||(27031852-27031958)
chr1 (137-190)||(40933888-40933940)
chr1 (97-173)||(6583236-6583312)
chr1 (97-173)||(9313309-9313385)
chr1 (71-182)||(27102149-27102261)
chr1 (287-382)||(38548867-38548963)
chr1 (123-184)||(27905423-27905484)
chr1 (97-182)||(32864572-32864657)
chr1 (97-181)||(41920437-41920521)
chr1 (97-164)||(7857638-7857705)
chr1 (74-172)||(24449951-24450049)
chr1 (74-172)||(24684499-24684597)
chr1 (220-302)||(50589096-50589178)
chr1 (141-182)||(5389432-5389473)
chr1 (97-181)||(5459146-5459230)
chr1 (123-183)||(15840922-15840982)
chr1 (97-181)||(30685916-30686000)
[»] chr4 (24 HSPs)
chr4 (17-381)||(12296080-12296447)
chr4 (17-363)||(46698617-46698961)
chr4 (17-182)||(35800395-35800559)
chr4 (71-182)||(53823432-53823543)
chr4 (17-188)||(21387209-21387378)
chr4 (17-192)||(38929739-38929906)
chr4 (17-192)||(25753077-25753251)
chr4 (17-182)||(19815235-19815400)
chr4 (97-175)||(31050680-31050758)
chr4 (17-182)||(19673006-19673170)
chr4 (71-182)||(22811171-22811281)
chr4 (235-360)||(46487396-46487522)
chr4 (123-184)||(6599954-6600015)
chr4 (137-182)||(16501756-16501801)
chr4 (21-155)||(21987964-21988091)
chr4 (220-264)||(28966977-28967021)
chr4 (73-192)||(2061740-2061858)
chr4 (74-181)||(4305687-4305794)
chr4 (74-181)||(8254989-8255096)
chr4 (74-181)||(8268407-8268514)
chr4 (17-164)||(39421042-39421189)
chr4 (141-178)||(41117982-41118019)
chr4 (220-264)||(21983748-21983792)
chr4 (141-181)||(35341350-35341390)
[»] chr2 (42 HSPs)
chr2 (63-382)||(25504717-25505039)
chr2 (17-182)||(18680970-18681135)
chr2 (17-382)||(22884942-22885308)
chr2 (17-182)||(4471829-4471993)
chr2 (229-374)||(43816273-43816418)
chr2 (19-324)||(27739883-27740189)
chr2 (123-324)||(33788499-33788702)
chr2 (20-182)||(31902425-31902587)
chr2 (17-192)||(29487037-29487210)
chr2 (17-181)||(15710612-15710776)
chr2 (137-363)||(3745359-3745584)
chr2 (17-182)||(15126421-15126579)
chr2 (72-182)||(1269443-1269553)
chr2 (52-181)||(15723112-15723241)
chr2 (24-108)||(3745272-3745356)
chr2 (306-382)||(13699094-13699170)
chr2 (17-110)||(2062813-2062905)
chr2 (287-364)||(20572265-20572342)
chr2 (97-181)||(39338877-39338961)
chr2 (137-182)||(27880140-27880185)
chr2 (123-182)||(16959993-16960052)
chr2 (98-156)||(41086825-41086883)
chr2 (229-265)||(4472041-4472077)
chr2 (17-181)||(7874197-7874360)
chr2 (109-181)||(14405195-14405267)
chr2 (108-164)||(36276200-36276256)
chr2 (71-181)||(13337233-13337343)
chr2 (70-117)||(37770717-37770764)
chr2 (140-182)||(2062917-2062959)
chr2 (270-324)||(24308594-24308648)
chr2 (137-182)||(915464-915508)
chr2 (141-182)||(10173589-10173630)
chr2 (257-330)||(16952229-16952302)
chr2 (257-330)||(17022894-17022967)
chr2 (257-330)||(17060200-17060273)
chr2 (142-182)||(16952394-16952434)
chr2 (142-182)||(17023059-17023099)
chr2 (142-182)||(17060365-17060405)
chr2 (142-182)||(17079199-17079239)
chr2 (123-171)||(23650396-23650444)
chr2 (222-270)||(27880052-27880100)
chr2 (144-184)||(30967151-30967191)
[»] chr7 (39 HSPs)
chr7 (96-382)||(22567920-22568209)
chr7 (11-363)||(11378958-11379309)
chr7 (20-300)||(13311746-13312029)
chr7 (17-166)||(38485462-38485610)
chr7 (17-192)||(46133279-46133454)
chr7 (17-192)||(1320699-1320874)
chr7 (229-324)||(12546274-12546369)
chr7 (21-182)||(47457033-47457187)
chr7 (72-182)||(6716747-6716857)
chr7 (99-191)||(12480873-12480965)
chr7 (71-182)||(8745112-8745223)
chr7 (97-192)||(16954638-16954733)
chr7 (220-349)||(9107271-9107400)
chr7 (74-164)||(25160777-25160867)
chr7 (71-192)||(24324799-24324920)
chr7 (97-192)||(16828937-16829032)
chr7 (229-325)||(9427969-9428067)
chr7 (220-265)||(48058580-48058625)
chr7 (97-173)||(6584894-6584970)
chr7 (74-181)||(10244144-10244251)
chr7 (71-182)||(42533263-42533374)
chr7 (75-173)||(34389925-34390023)
chr7 (71-181)||(36449043-36449152)
chr7 (137-182)||(48058665-48058710)
chr7 (97-181)||(38306246-38306330)
chr7 (97-172)||(5860309-5860384)
chr7 (74-181)||(47325897-47326004)
chr7 (97-179)||(3478337-3478419)
chr7 (120-182)||(9428116-9428178)
chr7 (52-182)||(23983136-23983265)
chr7 (123-192)||(9349760-9349828)
chr7 (103-188)||(26386180-26386265)
chr7 (123-183)||(1820012-1820072)
chr7 (136-184)||(2613876-2613924)
chr7 (141-181)||(33435138-33435178)
chr7 (141-181)||(35745839-35745879)
chr7 (97-181)||(37794974-37795058)
chr7 (220-264)||(47456949-47456993)
chr7 (142-178)||(48162041-48162077)
[»] chr3 (24 HSPs)
chr3 (17-182)||(30935401-30935567)
chr3 (21-303)||(5556479-5556764)
chr3 (229-382)||(25594339-25594493)
chr3 (74-179)||(25594534-25594639)
chr3 (17-184)||(823444-823611)
chr3 (97-183)||(14193925-14194011)
chr3 (98-191)||(14879421-14879514)
chr3 (17-181)||(23328362-23328525)
chr3 (97-172)||(2392527-2392602)
chr3 (97-172)||(2394274-2394349)
chr3 (17-175)||(14755283-14755439)
chr3 (98-181)||(19176488-19176571)
chr3 (11-182)||(27398857-27399028)
chr3 (19-192)||(47945619-47945785)
chr3 (123-192)||(33143950-33144019)
chr3 (97-181)||(45398781-45398865)
chr3 (17-182)||(1652897-1653064)
chr3 (122-181)||(17550967-17551026)
chr3 (98-173)||(40023592-40023667)
chr3 (138-180)||(31424262-31424304)
chr3 (74-164)||(34475783-34475873)
chr3 (123-181)||(43012386-43012444)
chr3 (123-172)||(9584074-9584123)
chr3 (137-169)||(30127287-30127319)
[»] chr8 (18 HSPs)
chr8 (56-182)||(30236139-30236265)
chr8 (17-325)||(17720572-17720880)
chr8 (17-182)||(10552174-10552338)
chr8 (17-182)||(35062362-35062527)
chr8 (21-363)||(15906595-15906941)
chr8 (21-181)||(18690341-18690501)
chr8 (17-182)||(10248564-10248729)
chr8 (75-172)||(15821400-15821497)
chr8 (74-181)||(37986870-37986977)
chr8 (64-182)||(32945714-32945832)
chr8 (74-181)||(9519461-9519568)
chr8 (98-181)||(31207374-31207457)
chr8 (141-182)||(17657013-17657054)
chr8 (137-182)||(41791275-41791320)
chr8 (122-181)||(24995407-24995466)
chr8 (122-181)||(41893412-41893471)
chr8 (141-181)||(16457473-16457513)
chr8 (97-181)||(34389017-34389101)
[»] scaffold1613 (1 HSPs)
scaffold1613 (17-382)||(825-1192)
[»] scaffold0062 (3 HSPs)
scaffold0062 (52-181)||(47033-47162)
scaffold0062 (17-181)||(59524-59688)
scaffold0062 (52-181)||(71669-71798)
[»] scaffold0200 (1 HSPs)
scaffold0200 (72-182)||(19343-19453)
[»] scaffold0119 (1 HSPs)
scaffold0119 (72-182)||(42149-42259)
[»] scaffold0050 (1 HSPs)
scaffold0050 (71-172)||(36666-36767)
[»] scaffold0063 (1 HSPs)
scaffold0063 (17-182)||(58032-58197)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 33968789 - 33968424
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||| ||||||||| ||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  33968789 ttgctccgagatcggaagttggcgtctaactgtattcttgtttggttggctacggtgtttctctggtgaaccgagggtatggggtggccttctgatttgg 33968690  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgggnnnnnnngttcttttgacggaccg 216  Q
    ||||||||||| ||||  | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  33968689 ttatgtagtctagtgggtagatcgcttttgattcgagatcgggagtcagttctttggttcaagttttgattttggatttttttgttcttttgacggaccg 33968590  T
Q  217 aatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggct 316  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||| ||||||||| |    
T  33968589 aaggttgagagatggtggaagctgattgatctttagaatagtggctcaactttggcgataaggacaaagtgtttcatttagaggggtgttattttgggat 33968490  T
Q  317 gagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 382  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||    
T  33968489 gagtagtgatgatgctggttatggataccatttttcagtggtcgttttgtaaaagagtctgtttta 33968424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 378 - 568
Target Start/End: Complemental strand, 33968245 - 33968054
Alignment:
Q  378 ttttaataaaatttgttgttcaaaaaagcaagttatgtagttcatactcaatcaggataaatatcgttggtcggttaatttataagcatattaaaatctt 477  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||    
T  33968245 ttttaataaaatttgttgttcaaaaaagtaagttatgtagttcatactcaatcagggtaaatatctttggtcggttaatttataagcatattaagatctt 33968146  T
Q  478 gatgccgactctaatcttaacgaactttcacgatccaactcacctaaattttaattttatcaa-aaaattaatgaacaaaattaaagatgtg 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  33968145 gatgccgactctaatcttaacgaactttcacgatccaactcacctaaattttaattttatcaaaaaaattaatgagcaaaattaaagatgtg 33968054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 12794019 - 12794194
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||||||  |||| |   ||| | |||||||||||||  |||||||||| |||||||  ||||| |||||| ||||||| |||||    
T  12794019 ttgcttcgagatcgggagttggagtctaacaacattatcgtttggttggctatggtgtttctctagtgaaccaggggtaaggggtgtccttctgttttgg 12794118  T
Q  117 ttatgtagtctggtggacaaatc-gcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgg 191  Q
    || |  ||||| |||| |  |||  |||||||||||||||| | ||||||||||| ||| ||||||| | ||||||    
T  12794119 ttctaaagtctagtgggccgatcaacttttgattcgagatcaggagtcagttcttgggtccaagtttagtttttgg 12794194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 20701922 - 20701814
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||||| |||| ||||  ||||||||||||||||||||| || ||| ||||||  |  ||| |||||||||||||||||| ||| ||||||||||    
T  20701922 tttctctggtgtaccgggggtgaggggtgcccttctgatttggtcatttagactggtgtgccgatcacttttgattcgagatcgggagttagttctttgg 20701823  T
Q  174 ttcaagttt 182  Q
     | ||||||    
T  20701822 cttaagttt 20701814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 32935435 - 32935342
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgg 191  Q
    ||||| |||||||||||||||  || |||||||||| |  |||||||||||||||||||||| ||||||||||| |  ||||| |||||||||||    
T  32935435 ggggttcccttctgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttcttggactcaag-tttgattttgg 32935342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 9224052 - 9224120
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg 192  Q
    |||||||||| |  |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  9224052 agtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttggttc-agttttggttttggg 9224120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 26216112 - 26216021
Alignment:
Q  99 ggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg 192  Q
    ||||||||||||||||| || |  |||||||||| |  ||| |||||||||||||||||| ||||||||||| ||||| ||||||| |||||||    
T  26216112 ggtgcccttctgatttgattcta-agtctggtgggccgatcacttttgattcgagatcgggagtcagttcttcggttc-agttttggttttggg 26216021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 20499910 - 20499990
Alignment:
Q  103 cccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtttt 183  Q
    ||||||||||||| || || ||| ||||||||  |||||||||||||||||||||||||  |||| |||  ||||||||||    
T  20499910 cccttctgatttgattctggagtatggtggaccgatcgcttttgattcgagatcggaagatagtttttttattcaagtttt 20499990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 16510478 - 16510323
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattctt-gtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttg 115  Q
    ||||||||||||||||||| ||  |||||||| | |||| |||||  | | ||  || ||||||||||| |||||||| | |||||||||| || |||||    
T  16510478 ttgcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatatggtttttctctggtgtaccgagggcaaggggtgccctgctaatttg 16510379  T
Q  116 gttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttcttt 171  Q
    ||| |  ||||| |||| |  ||| ||||||||||||||| |  ||||||||||||    
T  16510378 gttctaaagtctagtgggccgatcacttttgattcgagattgagagtcagttcttt 16510323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 26534839 - 26534727
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagt---t 167  Q
    |||||||||||||  |||| ||||  | |||| ||||||||||||||  || |||||||||| |  ||| ||||||||||||||| || |||||||   |    
T  26534839 gtgtttctctggtagaccgcgggt--gaggtggccttctgatttggtcctgaagtctggtgggccgatcacttttgattcgagattgggagtcagttctt 26534742  T
Q  168 ctttggttcaagttt 182  Q
    |||||||||||||||    
T  26534741 ctttggttcaagttt 26534727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 182
Target Start/End: Original strand, 21266074 - 21266183
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctt 170  Q
    ||||||||||||| ||| ||||||  | |||| |||| |||||||||  |  || ||||||| |  |||||||||||||||||||||| ||| |||| |     
T  21266074 gtgtttctctggtaaacggagggt--gaggtggccttatgatttggtcctaaagactggtgggccgatcgcttttgattcgagatcgggagttagttatg 21266171  T
Q  171 tggttcaagttt 182  Q
    ||||||||||||    
T  21266172 tggttcaagttt 21266183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 13098532 - 13098498
Alignment:
Q  230 ggtggaagctgattgatctttagaatagtggctca 264  Q
    |||||||| ||||||||||||||||||||||||||    
T  13098532 ggtggaagatgattgatctttagaatagtggctca 13098498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 32316392 - 32316438
Alignment:
Q  136 aatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |||| |||||||||||||||||| ||| ||||||||| |||||||||    
T  32316392 aatcacttttgattcgagatcggtagtaagttctttgattcaagttt 32316438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 3117478 - 3117562
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||||| || ||||| | || |||| |||||| |  ||| |||||||||| ||||||| |||||||||||||  |||||||    
T  3117478 ggggtgccctgctaatttgttgatatagtatggtgggccgatcacttttgattcaagatcgggagtcagttctttgactcaagtt 3117562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 13098739 - 13098699
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgt 57  Q
    |||||||||||| |||||||||| |||||||| ||||||||    
T  13098739 ttgcttcgagattgggagttggcgtctagctgcattcttgt 13098699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 71 - 182
Target Start/End: Original strand, 21264947 - 21265056
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctt 170  Q
    |||||||||| || ||||||||||  | |||| |||| |||||||||  || || || |||| |  || ||||||||||||||||||| ||| |||| |     
T  21264947 gtgtttctctagtaaaccgagggt--gaggtggccttatgatttggtcctgaagactagtgggccgatagcttttgattcgagatcgggagttagttatc 21265044  T
Q  171 tggttcaagttt 182  Q
    ||||||||||||    
T  21265045 tggttcaagttt 21265056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 23592275 - 23592247
Alignment:
Q  143 tttgattcgagatcggaagtcagttcttt 171  Q
    |||||||||||||||||||||||||||||    
T  23592275 tttgattcgagatcggaagtcagttcttt 23592247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 8e-75; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 21 - 382
Target Start/End: Complemental strand, 39184359 - 39183994
Alignment:
Q  21 ttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttat 120  Q
    ||||||||||||||||||| ||||| || | ||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| | ||    
T  39184359 ttcgagatcgggagttggcgtctagttgcaatcttgtttggttggcgacagtgtttctctggtgaaccgacggtttggggtgcccttctgatttgatcat 39184260  T
Q  121 gtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaag-ttttgattttggg---nnnnnnngttcttttgacggaccg 216  Q
    || ||||||||| |  ||| |||||||||||||||||||||||||||||||||||||||  |||| ||||| |          ||||||| |  |||||     
T  39184259 gtggtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggttcaagcatttggttttgagcttttttggtgttctttcggtggacca 39184160  T
Q  217 aatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggct 316  Q
     | |||| ||| | |||||||||||||||||||| |||||||||||||  ||||||||||||||||  ||| ||| || ||||||||| ||||||||| |    
T  39184159 gaggttgtgaggtagtggaagctgattgatcttttgaatagtggctcagctttggtgttgaggacatggtgattcgttaagaggggtgttattttgggat 39184060  T
Q  317 gagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 382  Q
     |||||||  |||| |||||||||||||||||| ||||||||||||| || | ||||| |||||||    
T  39184059 aagtagtggcgatgttggttatggataccgtttttcagtggtcgtttcgtgatagagtctgtttta 39183994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 63 - 382
Target Start/End: Original strand, 8730868 - 8731190
Alignment:
Q  63 tggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagt 162  Q
    ||||||| ||||| || ||||| || |||| || ||||||||||| |||||||||  || ||||||||||||  ||||||||| |||||||||||| |||    
T  8730868 tggctacggtgttcctatggtggactgaggataaggggtgcccttatgatttggtcttgcagtctggtggacctatcgcttttaattcgagatcgggagt 8730967  T
Q  163 cagttctttggttcaagttttgattttggg---nnnnnnngttcttttgacggaccgaatgttgagagatggtggaagctgattgatctttagaatagtg 259  Q
    ||||||||||||||| |||||| |||||||          ||||||| || |||||||| ||| |||| ||||||||||| |||||| |||||||||| |    
T  8730968 cagttctttggttcaggttttggttttgggcttttttggtgttctttcgatggaccgaaggttcagaggtggtggaagctaattgatatttagaatagcg 8731067  T
Q  260 gctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtgatgatgctggttatggataccgtttctcagtggtc 359  Q
    |||||| ||||||| |||||| |   ||||||||||||||||||| ||||||||| |||||||||    |  || |||| |||||||||| |||||||||    
T  8731068 gctcaactttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtagtggcttttttgtttattgataccgtttttcagtggtc 8731167  T
Q  360 gttttgtaaaagagtatgtttta 382  Q
    |||| || ||||| | |||||||    
T  8731168 gtttcgtgaaagactctgtttta 8731190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 24072442 - 24072128
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||| ||||||||||||||| | |||||||| |||||||||| | |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  24072442 ttgcttcaagatcgggagttggcgtttagctgtaatcttgtttggatagctacagtgtttctctggtggaccgagggtttggggtgcccttctgatttgg 24072343  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg---nnnnnnngttcttttgacgga 213  Q
    |  |  |||||||| | |  ||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||          ||||||| |  |||    
T  24072342 tcctaaagtctggttggctgatcgcttttgatttgagatcggaagtcagttctttggttcaag--ttgatttggggtttttttggtgttctttcggtgga 24072245  T
Q  214 ccgaatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgg 313  Q
    ||| | ||||| || |||| || ||||| || |||||||||||||| ||||| ||| |||  |||||    ||||||||||||||||  || ||||||||    
T  24072244 ccggaggttgaaaggtggttgatgctgaatggtctttagaatagtgactcaactttcgtgacgaggaaggggtgtttcatttagaggaatgttattttgg 24072145  T
Q  314 gctgagtagtgatgatg 330  Q
    | |||||||||| ||||    
T  24072144 gatgagtagtgacgatg 24072128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 31721582 - 31721742
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||||| |||||||||||||| |||||| | ||| ||||||||||||||||  ||||||||||||| |||| ||||| |||||||||||||||| |||    
T  31721582 ttgcttcgcgatcgggagttggcttctagcggcattattgtttggttggctacgatgtttctctggtggaccgggggtaaggggtgcccttctgatgtgg 31721681  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttca 177  Q
    || || |||||  ||| |  |||||||||||||||||||||| |||||||||| |||||||    
T  31721682 ttctgaagtctaatgggccgatcgcttttgattcgagatcgggagtcagttctctggttca 31721742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 7392207 - 7392051
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||||||  |||||||| | |||||||||| | | |   ||||||||||| || |||||||||  ||||||||||||||||||||    
T  7392207 ttgcttcgagatcgggagttggtgtctagctgcaatcttgtttggcttgatttggtgtttctctgatgtaccgagggtgaggggtgcccttctgatttgg 7392108  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    |  |  ||||||||||||  ||| |||||||||||||||||| ||||||||||||||    
T  7392107 tcctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagttctttgg 7392051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 8297373 - 8297538
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||||||||||| |||||||  |||||||| | | |||||| | | | |   |||||||||| ||| |||||||||  ||||||||||||||||||||    
T  8297373 ttgcttcgagatcgagagttggtgtctagctgcaattttgttttgcttgatttggtgtttctctagtgtaccgagggtgaggggtgcccttctgatttgg 8297472  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    || |  ||  |||||| | |||   ||||||||||||||||| |||||||||||||| ||||||||    
T  8297473 ttctaaagcatggtgggctaataatttttgattcgagatcgggagtcagttctttggctcaagttt 8297538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 17854244 - 17854079
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgttt-ggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttg 115  Q
    |||||| |||||||||||||||  |||||||  | |||||||| || ||||||  ||||| |||||||| |||| ||||  ||||||||||||| |||||    
T  17854244 ttgctttgagatcgggagttggtctctagctacaatcttgttttggctggctagggtgttcctctggtggaccgggggtgaggggtgcccttctaatttg 17854145  T
Q  116 gttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    ||  || ||| |||||| |  | ||||||||| |||||||||| ||||| || |||||||||||||    
T  17854144 gtcttgaagtatggtgggccgaccgcttttgactcgagatcgggagtcaattatttggttcaagtt 17854079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 7195414 - 7195251
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||| ||   ||||||| | | ||||||||   | |  ||||||||||||||| ||| |||||  ||||||||||||||||||||    
T  7195414 ttgcttcgagatcgggagtcggtggctagctgcaatattgtttggcgtgatttagtgtttctctggtgtacc-agggtgaggggtgcccttctgatttgg 7195316  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
      ||  |||||||||  |  ||| |||||||||||||||||| |||||||||||||| |||||||    
T  7195315 ccataaagtctggtgagccgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 7195251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 39024569 - 39024461
Alignment:
Q  73 gtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttg 172  Q
    |||||||||||| || ||||||  ||| ||||||||||| |||||  || ||| ||||||   ||||||||||||||||||||||| ||||| |||||||    
T  39024569 gtttctctggtggactgagggtgaggg-tgcccttctgagttggtcctgaagtttggtggctcaatcgcttttgattcgagatcgggagtcacttctttg 39024471  T
Q  173 gttcaagttt 182  Q
    ||||||||||    
T  39024470 gttcaagttt 39024461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 13954355 - 13954245
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctt 170  Q
    |||||||||||||| ||||| |||  |||||||| ||||||||||||  |  |||||||||| |  ||| |||||||||||||||||| ||||| | |||    
T  13954355 gtgtttctctggtgtaccgaaggtgaggggtgcc-ttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcattactt 13954257  T
Q  171 tggttcaagttt 182  Q
    ||| ||||||||    
T  13954256 tggctcaagttt 13954245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 14302552 - 14302441
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctt 170  Q
    |||||||||||||| | |||||||  ||| |||||||||| ||||||  |  ||||||||||||  ||| |||||| |||||||| || |||||||||||    
T  14302552 gtgtttctctggtgtatcgagggtgagggatgcccttctgttttggtcctaaagtctggtggactgatcacttttggttcgagattgggagtcagttctt 14302453  T
Q  171 tggttcaagttt 182  Q
    |||  |||||||    
T  14302452 tggagcaagttt 14302441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 22675394 - 22675335
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    ||||||||||||  |||| ||||||||||||||||| |||||||||||||| ||||||||    
T  22675394 agtctggtggaccgatcgattttgattcgagatcgggagtcagttctttggctcaagttt 22675335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 27712981 - 27713139
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||||||| |||||||||||| ||||| || |||||||||||||||||        |||||||||| || | || || ||| ||||| |||| || ||    
T  27712981 ttgcttcgaggtcgggagttggcgtctagatgcattcttgtttggttggc-------attctctggtggactggggataagggttgcccgtctggttggg 27713073  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |  || ||||| |||| |  |||| ||||||||||||||||| | |||||||||||| ||||||||    
T  27713074 tcctgaagtctagtgggccgatcgtttttgattcgagatcgggaatcagttctttggctcaagttt 27713139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 33259004 - 33258899
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctt 170  Q
    |||||||||||||| ||||| |||  |||||| ||||||| ||||||  |  |||||||||| |  ||| |||||||||||||||| | ||| |||||||    
T  33259004 gtgtttctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaagtctggtgggccgatcacttttgattcgagatcaggagttagttctt 33258905  T
Q  171 tggttc 176  Q
    ||||||    
T  33258904 tggttc 33258899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 698323 - 698430
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||||| |||| |||   |||||||||| || |||||||  | |||||||||||||  ||| |||||||||||||||||| |||||  ||||||     
T  698323 tttctctggtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagatcgggagtcaactctttga 698422  T
Q  174 ttcaagtt 181  Q
     |||||||    
T  698423 ctcaagtt 698430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 17853960 - 17853862
Alignment:
Q  285 gtgtttcatttagaggggtgcta-ttttgggctgagtagtgatgatgc-tggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 382  Q
    |||||||||||||||| || ||| ||||||| ||||||||| |||||  |||||||||||| ||||| |||||| |||||| ||||| |||| |||||||    
T  17853960 gtgtttcatttagaggtgt-ctacttttggggtgagtagtggtgatgggtggttatggatatcgtttttcagtgatcgtttcgtaaaggagtctgtttta 17853862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 23426452 - 23426547
Alignment:
Q  229 tggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtg 324  Q
    |||||||||||||||||||  | |||| ||||||||  || || |||| |||||| ||||||||||||||||| || ||| | ||| |||||||||    
T  23426452 tggtggaagctgattgatccatggaattgtggctcagcttaggagttgcggacaatgtgtttcatttagagggttgttatctggggatgagtagtg 23426547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 34378060 - 34378158
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttg 172  Q
    ||||||||||| |||| ||| | || ||||||| || |||||||  |  |||||||||| |  ||| |||||||||||||||||| |||||||||||||    
T  34378060 tttctctggtgtaccgggggcaaggagtgccctgctaatttggtactaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttg 34378158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 25992018 - 25992066
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttcttt 171  Q
    |||||||||| | ||||||||||||||||||||||  ||||||||||||    
T  25992018 agtctggtgggccaatcgcttttgattcgagatcgagagtcagttcttt 25992066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 22675295 - 22675250
Alignment:
Q  220 gttgagagatggtggaagctgattgatctttagaatagtggctcaa 265  Q
    |||| ||| ||||||||| ||||||||||||||| |||||||||||    
T  22675295 gttgtgaggtggtggaagttgattgatctttagactagtggctcaa 22675250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 29087492 - 29087541
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttg 172  Q
    ||||||||||||  ||| |||||||||||||||| | |||||||||||||    
T  29087492 agtctggtggactgatcccttttgattcgagatcaggagtcagttctttg 29087541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 27713188 - 27713224
Alignment:
Q  229 tggtggaagctgattgatctttagaatagtggctcaa 265  Q
    |||||||| || |||||||||||||||||||||||||    
T  27713188 tggtggaaacttattgatctttagaatagtggctcaa 27713224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 7e-66; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 21 - 382
Target Start/End: Original strand, 17033495 - 17033860
Alignment:
Q  21 ttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttat 120  Q
    |||||||||| || ||||| ||||| || | |||||||||| || |||| ||| |||| |||||||||||| ||| |||||||||||||||||||||  |    
T  17033495 ttcgagatcgagaattggcgtctagttgcaatcttgtttggctgactacggtgattctatggtgaaccgagagtagggggtgcccttctgatttggtcct 17033594  T
Q  121 gtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgggnnnnnnn----gttcttttgacggaccg 216  Q
     ||||||||||| |  ||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||||           ||||||| | ||  ||     
T  17033595 atagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggttcaagttttggttttgggcttttttttgtgttctttcggcgatcct 17033694  T
Q  217 aatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggct 316  Q
     | |||  ||| || || |||||||||||||||||||||| |||||||| ||||||| ||||||||  |||||||||| ||||||||| ||||||||| |    
T  17033695 gaggttatgaggtgatgcaagctgattgatctttagaataatggctcaactttggtgatgaggacatggtgtttcattcagaggggtgttattttgggat 17033794  T
Q  317 gagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 382  Q
     ||||||| |||||||||||||| ||||||||| | ||||||||||| || |||||||||||||||    
T  17033795 tagtagtggtgatgctggttatgtataccgtttttaagtggtcgtttcgtgaaagagtatgtttta 17033860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 21 - 363
Target Start/End: Original strand, 42374072 - 42374417
Alignment:
Q  21 ttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttat 120  Q
    |||||||||||||||  |  ||||| || | |||||||||| || | ||| ||||||| ||||| ||||||||| |||||||||||||||||||||| ||    
T  42374072 ttcgagatcgggagtcagtgtctagttgcaatcttgtttggctgacgacaatgtttctttggtgtaccgagggtttggggtgcccttctgatttggtcat 42374171  T
Q  121 gtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg---nnnnnnngttcttttgacggaccga 217  Q
    || |||||||||||  ||||||||||||| |||||||| |||||||  |||||||||||||||| |||||||          ||||||| | |  ||||     
T  42374172 gttgtctggtggaccgatcgcttttgatttgagatcgggagtcagtcttttggttcaagttttggttttgggcttgtttggcgttctttcggcataccgg 42374271  T
Q  218 atgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctg 317  Q
    |  ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | | ||| | |||| ||||||| ||| ||||| |     
T  42374272 agattgagaggtggtggaagctgattgatctttagaatagtggctcaactttggtgatgaggacgaggagttgcttttataggggtgttatcttgggttc 42374371  T
Q  318 agtagtgatgatgctggttatggataccgtttctcagtggtcgttt 363  Q
    ||||||| |||   ||||||||||||| |||| |||||||||||||    
T  42374372 agtagtggtgacattggttatggatacagtttttcagtggtcgttt 42374417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 54 - 363
Target Start/End: Original strand, 46603334 - 46603634
Alignment:
Q  54 ttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgag 153  Q
    |||||||| ||| |||| ||||||||||||| | |||| || |||| |||||| |||||| ||| |||||||||||||| | | ||||||||||||||||    
T  46603334 ttgtttggctggttacattgtttctctggtggatcgagagtttgggatgccctcctgattaggtcatgtagtctggtgggccattcgcttttgattcgag 46603433  T
Q  154 atcggaagtcagttctttggttcaagttttgattttgggnnnnnnngttcttttgacggaccgaatgttgagagatggtggaagctgattgatctttaga 253  Q
    ||||  ||||||||||||||||||| |||||||||||||        || ||| | ||||||| | |||||||| |||||| || |||||||||| ||||    
T  46603434 atcgagagtcagttctttggttcaatttttgattttgggta------ttttttcggcggaccggaggttgagaggtggtgggagttgattgatctgtaga 46603527  T
Q  254 atagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtgatgatgctggttatggataccgtttctca 353  Q
    ||  |||||||| ||||||| | |||||| | ||||| ||||||||||||| |||||||||  ||||||||  |||| || ||||||||| ||| |  ||    
T  46603528 at--tggctcaactttggtgataaggacataatgttt-atttagaggggtgttattttgggaagagtagtggcgatgttgattatggataacgtgttcca 46603624  T
Q  354 gtggtcgttt 363  Q
    ||||||||||    
T  46603625 gtggtcgttt 46603634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 38544913 - 38544546
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||||||||| |||||||||  |||||||| | ||||||||| |||  |   |||||||||||||| || | |  |  ||||| ||||||||||||||    
T  38544913 ttgcttcgagattgggagttggtgtctagctgcaatcttgtttgattgattttggtgtttctctggtggactgggaatgaggggt-cccttctgatttgg 38544815  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg---nnnnnnngttcttttgacgga 213  Q
    | ||| |||||||||| |  |||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |          ||||| | || | |    
T  38544814 tcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttggtttaagttttggttttgaggttttttagtgttctctcgatgaa 38544715  T
Q  214 ccgaatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgg 313  Q
     || |  || |||  ||||||||| ||||||||||||||||||||||||||  |||| || ||||| |   |||||||||||||||||||| ||  ||||    
T  38544714 tcggagattaagaagtggtggaagatgattgatctttagaatagtggctcagttttgctgatgagggc-gggtgtttcatttagaggggtgttacgttgg 38544616  T
Q  314 gctgagtagtgatgatg-ctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 382  Q
    | |||||||||| ||||  |||||||||||| |||||  ||||| || ||  || ||||||| |||||||    
T  38544615 gatgagtagtgacgatgagtggttatggatatcgttttccagtgatcattccgtgaaagagtctgtttta 38544546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 4651677 - 4651834
Alignment:
Q  8 agattattcttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgccctt 107  Q
    |||||||| |||||||||| | |||||||| | ||||||   ||| |||||| |||||||||||||||||||||||| |||| ||||| |||||||||||    
T  4651677 agattatt-ttgcttcgagtttgggagttgacgtctagcgacattattgtttcgttggctacagtgtttctctggtgtaccgggggtaaggggtgccctt 4651775  T
Q  108 ctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagt 166  Q
    |||| || |||  | ||||||| || |  ||| |||||||||||||||||| |||||||    
T  4651776 ctgaatttgttccgaagtctggggggccgatcacttttgattcgagatcgggagtcagt 4651834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 50589381 - 50589218
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||| ||||| ||||||||  ||||||||||| ||||||| ||  |||||||||| || | ||||| ||||||||| |||| || ||    
T  50589381 ttgcttcgagatcgggacttggcgtctagctgctttcttgtttggctggctacggt--ttctctggtggactgggggtaaggggtgcccgtctggttggg 50589284  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |  || |||| ||||| |  |||||||||||||||| ||||| || |||||||||||  |||||||    
T  50589283 tcctgaagtccggtgggctgatcgcttttgattcgaaatcgggagccagttctttggcccaagttt 50589218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 19598599 - 19598715
Alignment:
Q  75 ttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggt 174  Q
    |||||||||| |||||||||| ||||||||| |||| || |||  || |||||||||| |  |||||||||||||||||||||  |||||||||||||      
T  19598599 ttctctggtggaccgagggtaaggggtgcccgtctggttgggtcctgaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttgac 19598698  T
Q  175 tcaagttttgattttggg 192  Q
    ||||| ||||||||||||    
T  19598699 tcaag-tttgattttggg 19598715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 24658829 - 24658990
Alignment:
Q  11 ttattcttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctg 110  Q
    ||||| ||||||| ||||||||||||||  |||||||| | || ||||||  | | ||  ||||| |||||||| | || ||| | |||||||||| |||    
T  24658829 ttatttttgcttcaagatcgggagttggtgtctagctgcaatcatgtttgacttgatatggtgtt-ctctggtgtatcgggggcaaggggtgccctgctg 24658927  T
Q  111 atttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    |||||||| |  |||||||||| | |||| |||||||||||||||||| |||||| |||||||    
T  24658928 atttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtcagctctttgg 24658990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 31585879 - 31585772
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||||| || ||||||  |||||||||| || |||||||  | ||||||||||| |  ||| |||||||||||||||||| |||||||||||||     
T  31585879 tttctctggtgtactgagggtgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttga 31585780  T
Q  174 ttcaagtt 181  Q
     |||||||    
T  31585779 ctcaagtt 31585772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 46814585 - 46814479
Alignment:
Q  75 ttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggt 174  Q
    |||||||||| |||| ||| | |||||||||| ||||||||||| |  |||||||||| |  ||| |||||||||||||||||| |||||| | |||||     
T  46814585 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggc 46814486  T
Q  175 tcaagtt 181  Q
    |||||||    
T  46814485 tcaagtt 46814479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 46692938 - 46692831
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||||| |||| |||   | |||||||| || ||||||| || ||||||||||| |  ||| |||||||||||||||||| ||| ||||||||||    
T  46692938 tttctctggtgtaccgggggcgagaggtgccctgctaatttggtgatatagtctggtgggccgatcacttttgattcgagatcgggagttagttctttgg 46692839  T
Q  174 ttcaagtt 181  Q
     |||||||    
T  46692838 ctcaagtt 46692831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 27031958 - 27031852
Alignment:
Q  75 ttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggt 174  Q
    |||||||||| |||| ||| | |||||||||| ||||||||||| |  ||||| |||| |  ||| |||||||||||||||||  |||||| |||||||     
T  27031958 ttctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggc 27031859  T
Q  175 tcaagtt 181  Q
    |||||||    
T  27031858 tcaagtt 27031852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 40933888 - 40933940
Alignment:
Q  137 atcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttg 190  Q
    ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||    
T  40933888 atcgcttttgatttgagatcggaagtcagttatttggttcaa-ttttgattttg 40933940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 6583312 - 6583236
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    |||||||| ||||||||||||  |  ||||||||||||  ||| |||||||||||||||||| ||||| ||||||||    
T  6583312 ggggtgcctttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcggcagtcaattctttgg 6583236  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 9313385 - 9313309
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    |||||||||||||||||||||  |  ||||| |||| |  ||| |||||||||||||||||| ||||||||||||||    
T  9313385 ggggtgcccttctgatttggtcctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagttctttgg 9313309  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 182
Target Start/End: Original strand, 27102149 - 27102261
Alignment:
Q  71 gtgtttctctggtgaaccgagggt-atggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttct 169  Q
    |||||||||||||| ||||||||| | |||||||||||||| ||||||     |||||   || |  ||| |||||||||||||||||| ||||||||||    
T  27102149 gtgtttctctggtgtaccgagggtgagggggtgcccttctgttttggtctcaaagtctaacgggccgatcacttttgattcgagatcgggagtcagttct 27102248  T
Q  170 ttggttcaagttt 182  Q
    |||| ||||||||    
T  27102249 ttggatcaagttt 27102261  T

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Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 382
Target Start/End: Complemental strand, 38548963 - 38548867
Alignment:
Q  287 gtttcatttagaggggtgctattttgggctgagtagtgatgat-gctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 382  Q
    |||| ||||||||||||| || |||||| |||||||||| ||| | |||||||| ||| ||||| |||||| |||||| || ||||||| |||||||    
T  38548963 gtttgatttagaggggtgttactttgggatgagtagtgacgatgggtggttatgaatatcgtttttcagtgatcgtttcgtgaaagagtctgtttta 38548867  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 27905423 - 27905484
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttg 184  Q
    ||||||||||||  ||| |||||||||||||||| ||||| ||||||||| |||| ||||||    
T  27905423 agtctggtggaccgatcacttttgattcgagatcagaagttagttctttgattcatgttttg 27905484  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 32864657 - 32864572
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |||||||||||| ||||||||  |  || ||||||| | |||| ||||| ||||||||||||||||| ||||||||  ||||||||    
T  32864657 ggggtgcccttccgatttggtcctaaaggctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagttt 32864572  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 41920437 - 41920521
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||||| || |||||||  |  |||||||||| |  ||| |||||||||||||||||| |||||||||||||  |||||||    
T  41920437 ggggtgccctgctaatttggtactacagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 41920521  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 7857638 - 7857705
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtca 164  Q
    |||||||||| ||||||||||| |  |||||||||| |  ||| |||||||||||||||||| |||||    
T  7857638 ggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 7857705  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 24450049 - 24449951
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttg 172  Q
    ||||||||||| |||| |||   |||||||||| ||  ||||||  | |||| |||||| |  ||| ||||||||| ||||||||||||||||||||||    
T  24450049 tttctctggtgtaccgggggcgaggggtgccctgctattttggtactatagtttggtgggccgatcacttttgatttgagatcggaagtcagttctttg 24449951  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 24684597 - 24684499
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttg 172  Q
    ||||||||||| |||| |||   |||||||||| || ||||| || |  |||||||||| |  ||| ||||| ||||||||||||| ||||||||||||    
T  24684597 tttctctggtgtaccgggggcgaggggtgccctactaatttgattctaaagtctggtgggccgatcacttttaattcgagatcggatgtcagttctttg 24684499  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 302
Target Start/End: Complemental strand, 50589178 - 50589096
Alignment:
Q  220 gttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagagggg 302  Q
    |||| ||| |||| |||| |||||||||||| ||||||| |||||| || |||| ||  |||  |||||||||||||||||||    
T  50589178 gttgtgaggtggtagaagttgattgatctttggaatagtagctcaacttaggtgatgcagacggagtgtttcatttagagggg 50589096  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 5389473 - 5389432
Alignment:
Q  141 cttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |||||||||||||||||| |||||||||||||  ||||||||    
T  5389473 cttttgattcgagatcgggagtcagttctttgactcaagttt 5389432  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 5459146 - 5459230
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    ||||| |||| || |||||||  | ||||||||||| |  ||| |||||||||||||||||| ||||| || |||| ||||||||    
T  5459146 ggggtaccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaattatttgattcaagtt 5459230  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 15840982 - 15840922
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtttt 183  Q
    |||||||||| |  ||| |||||||||||||||||| ||||||||  ||| ||||||||||    
T  15840982 agtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttgattcaagtttt 15840922  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 30686000 - 30685916
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||||| || |||||||  | |||||| |||| |  ||| ||||||||| |||||||| |||||||||||||  |||||||    
T  30686000 ggggtgccctgctaatttggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcagttctttgactcaagtt 30685916  T

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Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 12296080 - 12296447
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||| | ||||| ||| | |||| ||| |||| ||||| ||||||||| |||| |||||    
T  12296080 ttgcttcgagatcgggagttggcgtctagctgcattcttatttggctagctacggtgatcctctagtggaccgggggtaaggggtgcccctctggtttgg 12296179  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg---nnnnnnngttcttttgacgga 213  Q
    |  || |||||||||  |  | ||||||||||||||||||  ||||||||||||||||||||| ||||||||||||          ||||||| |  |||    
T  12296180 tcctgaagtctggtgtgccgagcgcttttgattcgagatcaaaagtcagttctttggttcaag-tttgattttgggcttttttggtgttctttcggtgga 12296278  T
Q  214 ccgaatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgg 313  Q
    ||| | |||| | | |||||||||||| ||| |||||||| ||||||||||| || |||| |||||||  ||||||||||||||||||||| ||||||||    
T  12296279 ccggaggttgtgtggtggtggaagctggttgttctttagagtagtggctcaacttaggtgatgaggacggagtgtttcatttagaggggtgttattttgg 12296378  T
Q  314 gctgagtagtgatgat-gctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttt 381  Q
    | |||||||||  ||| | |||||||||||| ||||| |||||||||| || | ||| |||| ||||||    
T  12296379 gatgagtagtggcgatgggtggttatggatatcgtttttcagtggtcgcttcggaaaggagtctgtttt 12296447  T

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Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 46698961 - 46698617
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||||||  |||||||| | |||||||||||  ||||||| |||||| ||||| ||||||||| |||||||||||||||||||||    
T  46698961 ttgcttcgagatcgggagttggtgtctagctgcagtcttgtttggtaagctacagagtttctttggtggaccgagggtgtggggtgcccttctgatttgg 46698862  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgg---gnnnnnnngttcttttgacgga 213  Q
    |  ||||||||||||| |  || ||||||||||||||||||| ||||||||||||||||||||||||| ||||||   |       ||||||| |   ||    
T  46698861 tcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagttctttggttcaagttttgtttttgggctgtttaggtgttctttcggtaga 46698762  T
Q  214 ccgaatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgg 313  Q
      | | ||| | |  ||||||||||||||| |||||||||||||||||||   ||||||| ||||||||| |||||||||||||||||    | ||| ||    
T  46698761 ttggaggtttaaaagtggtggaagctgattcatctttagaatagtggctcggctttggtgatgaggacaaggtgtttcatttagaggg----tttttcgg 46698666  T
Q  314 gctgagtagtgatgatgctggttatggataccgtttctcagtggtcgttt 363  Q
    |  |||||||   |||| |||||||||||||||||| |||||||| ||||    
T  46698665 gaggagtagtagcgatgttggttatggataccgttt-tcagtggttgttt 46698617  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 35800395 - 35800559
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||||||||| |||||| |||||| | |   | ||||||||||||||| ||| ||||||||||||| | || ||||| | ||||||||||||||||||    
T  35800395 ttgcttcgagattgggagtgggcatccaacgacaatcttgtttggttggcgacaatgtttctctggtggatcg-gggtaagtggtgcccttctgatttgg 35800493  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    || || ||||||||| ||  |||||||||||||||||||||||||||||||||||| ||| |||||    
T  35800494 ttctgaagtctggtgaaccgatcgcttttgattcgagatcggaagtcagttctttgattccagttt 35800559  T

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Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 53823543 - 53823432
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctt 170  Q
    |||||||||||||| ||||  |||  ||||||||||||||||||||| ||  |||||||||||| |||| |||||||||||||||||| |||||||||||    
T  53823543 gtgtttctctggtgtaccggaggtgaggggtgcccttctgatttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctt 53823444  T
Q  171 tggttcaagttt 182  Q
    ||| ||||||||    
T  53823443 tggctcaagttt 53823432  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 21387378 - 21387209
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||||||||||||||||||| ||||||  | | ||| |||||||||| ||   |||  |||||||| | || ||||  ||  | ||||||||||||||    
T  21387378 ttgcttcgagatcgggagttggtatctagtagcaatctggtttggttggttatgatgt--ctctggtggatcgggggtgaggaatacccttctgatttgg 21387281  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattt 188  Q
    |  || ||||||||||||  ||| |||||||||||||||||||||||||||||| | |||||||||| ||||    
T  21387280 tgctggagtctggtggaccgatcacttttgattcgagatcggaagtcagttcttcgattcaagtttttattt 21387209  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 38929739 - 38929906
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||| ||||||| | ||||| ||||||||||||||||||        |||||||||| |||| ||||| ||||||||| |||| || ||    
T  38929739 ttgcttcgagatcggaagttggcgtttagctctattcttgtttggttggca-------ttctctggtggaccgggggtaaggggtgcccgtctggttggg 38929831  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg 192  Q
    |  || |||||| ||| |  ||| ||||||||||||||||   |||||||||||||| ||||| ||||||||||||    
T  38929832 tcctgaagtctgctgggccgatcacttttgattcgagatcaagagtcagttctttggctcaag-tttgattttggg 38929906  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 25753077 - 25753251
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||| ||  |||||||| | ||||||||||   | |   |||||||||||||| ||||  |||  || |||||| ||| ||||||    
T  25753077 ttgcttcgagatcgggagtcggtgtctagctgcaatcttgtttggcgtgatgtggtgtttctctggtgtaccggaggtgaggagtgcccgtcttatttgg 25753176  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg 192  Q
    |  |  ||||||||||    ||| |||||||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  25753177 tcctaaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaag-tttgattttggg 25753251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 19815400 - 19815235
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||||||||||| |||| ||  |||||||| | |||||||||| | | ||  || ||| ||||||  |||| ||||  |||||||||||||| |||||    
T  19815400 ttgcttcgagatcgagagtcggtgtctagctgcaatcttgtttggcttgatattgtatttttctggttgaccgggggtgaggggtgcccttctgttttgg 19815301  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |  |  ||||||||||||  ||  ||||| |||||||||| | |||||||||||||| ||||||||    
T  19815300 tcctaaagtctggtggaccgattactttttattcgagatcaggagtcagttctttggctcaagttt 19815235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 31050758 - 31050680
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggtt 175  Q
    |||||||||| ||||||||||| |  |||||||||| |  ||| |||||||||||||||||||||| || |||||||||    
T  31050758 ggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcggaagttaggtctttggtt 31050680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 19673006 - 19673170
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||||||||||||||||  |  |||||||| | |||||||||| | | ||   | ||||||||||  | || ||||  |||||||||||||| |||||    
T  19673006 ttgcttcgagatcgggagtcagtgtctagctgcaatcttgtttggcttgatatgatatttctctggttgatcgggggtgaggggtgcccttctgttttgg 19673105  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |  |  |||||||||||| | || ||||| |||||||||| | |||||||||||||| ||||||||    
T  19673106 tcctaaagtctggtggaccattccctttt-attcgagatcaggagtcagttctttggctcaagttt 19673170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 22811281 - 22811171
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctt 170  Q
    |||||||||||||| | || ||||  || ||||||||||||||||||  |  |||||||||| |  |||  |||| |||||||||||| |||||||||||    
T  22811281 gtgtttctctggtgtatcg-gggtgaggagtgcccttctgatttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagttctt 22811183  T
Q  171 tggttcaagttt 182  Q
    ||| ||||||||    
T  22811182 tggctcaagttt 22811171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 360
Target Start/End: Original strand, 46487396 - 46487522
Alignment:
Q  235 aagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtgatgat-gctg 333  Q
    ||||||||||||||||| |||||||||| |  || ||||||||||||  || ||||| ||||||||| |  |||||| || |||||||||  |||   ||    
T  46487396 aagctgattgatctttataatagtggcttagtttaggtgttgaggacggagcgtttcgtttagagggattttattttaggatgagtagtggcgatatgtg 46487495  T
Q  334 gttatggataccgtttctcagtggtcg 360  Q
    |||||| ||| ||||| ||||||||||    
T  46487496 gttatgaatatcgtttttcagtggtcg 46487522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 6600015 - 6599954
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttg 184  Q
    |||||||||| |  ||||||||||||| |||||||| |||| |||||||| |||||||||||    
T  6600015 agtctggtgggccgatcgcttttgattagagatcgggagtcggttctttgattcaagttttg 6599954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 16501756 - 16501801
Alignment:
Q  137 atcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||    
T  16501756 atcgcttttgattcgagatcgggagtcagctctttggttctagttt 16501801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 21988091 - 21987964
Alignment:
Q  21 ttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttat 120  Q
    ||||||||| ||||||||  |||||||| |||||||||||| ||||        |||||||||| |||| ||||| ||||||||| |||| || |||  |    
T  21988091 ttcgagatcaggagttggtgtctagctgcattcttgtttggctggca-------ttctctggtggaccgggggtaaggggtgcccgtctggttgggtcct 21987999  T
Q  121 gtagtctggtggacaaatcgcttttgattcgagat 155  Q
    | |||||| || ||  |||||||||||||||||||    
T  21987998 gaagtctgatgaaccgatcgcttttgattcgagat 21987964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 28966977 - 28967021
Alignment:
Q  220 gttgagagatggtggaagctgattgatctttagaatagtggctca 264  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||    
T  28966977 gttgtgaggtggtggaagctgattgatctctagaatagtggctca 28967021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 2061858 - 2061740
Alignment:
Q  73 gtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttg 172  Q
    |||||||||||| | ||| |||  ||||||||||  ||||||| |  |  |||||||||| |  ||| ||||||||||||||| |  |||||||||||||    
T  2061858 gtttctctggtgtatcgaaggtgaggggtgccctcttgatttgatcctaaagtctggtgggctgatcacttttgattcgagattgagagtcagttctttg 2061759  T
Q  173 gttcaagttttgattttggg 192  Q
    | || |||||||||||||||    
T  2061758 gatc-agttttgattttggg 2061740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 4305687 - 4305794
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||||| |||| ||| | | |||||||| || |||||||  | |||||||||||    ||| |||||||||||||||||| ||| |||||||||     
T  4305687 tttctctggtgtaccgggggcaagcggtgccctgctaatttggtactatagtctggtggggcgatcacttttgattcgagatcgggagttagttctttgt 4305786  T
Q  174 ttcaagtt 181  Q
     |||||||    
T  4305787 ctcaagtt 4305794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 8254989 - 8255096
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||||| |||| |||   |||||||||| || |||||||  |  |||||||||| |  ||| |||||||| ||||||| |||||||||||||||     
T  8254989 tttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttctttga 8255088  T
Q  174 ttcaagtt 181  Q
     |||||||    
T  8255089 ctcaagtt 8255096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 8268407 - 8268514
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||||| |||| |||   |||||||||| || |||||||  |  |||||||||| |  ||| |||||||| ||||||| |||||||||||||||     
T  8268407 tttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttctttga 8268506  T
Q  174 ttcaagtt 181  Q
     |||||||    
T  8268507 ctcaagtt 8268514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 39421189 - 39421042
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||| | ||  |||||||| | ||||||||||   | |   ||||||||||  || || ||||||  |||||||||||||||| |||    
T  39421189 ttgcttcgagatcgggaatcggtgtctagctgcaatcttgtttggcgtgatttggtgtttctctaatgtactgagggtgaggggtgcccttctgatatgg 39421090  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtca 164  Q
    |  | ||| ||||||| |  ||| |||||||||||||||||| |||||    
T  39421089 tcttatagcctggtgggccgatcacttttgattcgagatcgggagtca 39421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 41118019 - 41117982
Alignment:
Q  141 cttttgattcgagatcggaagtcagttctttggttcaa 178  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  41118019 cttttgattcgagatcggaagtaagttctttggctcaa 41117982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 21983792 - 21983748
Alignment:
Q  220 gttgagagatggtggaagctgattgatctttagaatagtggctca 264  Q
    |||| ||| ||||||||| ||||||||||||||||||||| ||||    
T  21983792 gttgtgaggtggtggaagttgattgatctttagaatagtgactca 21983748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 35341390 - 35341350
Alignment:
Q  141 cttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||| |||||||||||||||| ||||||| |||||||    
T  35341390 cttttgatccgagatcggaagtcagctctttggctcaagtt 35341350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 63 - 382
Target Start/End: Complemental strand, 25505039 - 25504717
Alignment:
Q  63 tggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagt 162  Q
    ||||||| ||||| || ||||| || |||| || ||||||||||| |||||||||  || ||||||||||||  ||||||||| |||||||||||| |||    
T  25505039 tggctacggtgttcctatggtggactgaggataaggggtgcccttatgatttggtcttgcagtctggtggacctatcgcttttaattcgagatcgggagt 25504940  T
Q  163 cagttctttggttcaagttttgattttggg---nnnnnnngttcttttgacggaccgaatgttgagagatggtggaagctgattgatctttagaatagtg 259  Q
    ||||||||||||||| |||||| |||||||          ||||||| || |||||||| ||| |||| ||||||||||| |||||| |||||||||| |    
T  25504939 cagttctttggttcaggttttggttttgggcttttttggtgttctttcgatggaccgaaggttcagaggtggtggaagctaattgatatttagaatagcg 25504840  T
Q  260 gctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtgatgatgctggttatggataccgtttctcagtggtc 359  Q
    |||||| ||||||| |||||| |   ||||||||||||||||||| ||||||||| |||||||||    |  || |||| |||||||||| |||||||||    
T  25504839 gctcaactttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtagtggcttttttgtttattgataccgtttttcagtggtc 25504740  T
Q  360 gttttgtaaaagagtatgtttta 382  Q
    |||| || ||||| | |||||||    
T  25504739 gtttcgtgaaagactctgtttta 25504717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 18680970 - 18681135
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||||||| |||||| |  || ||||||||||| |||| |||||||||| ||| |||| ||||| ||  ||||||||||||||||    
T  18680970 ttgcttcgagatcgggagttggcgtctagcggcgttattgtttggttgactacggtgtttctctagtggaccgggggtaaggactgcccttctgatttgg 18681069  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    ||||| ||| |||||| |  || || |||||||||||||||| |||||||||| ||||||||||||    
T  18681070 ttatgaagtatggtgggccgattgcatttgattcgagatcgggagtcagttctctggttcaagttt 18681135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 22885308 - 22884942
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||||||  ||||||||  | |||||||||  |||||| ||||| |||||||| |  | ||||  |||||||||  ||| ||||     
T  22885308 ttgcttcgagatcgggagttggtgtctagctgcttccttgtttggcgggctacggtgttgctctggtggattgggggttaggggtgcccg-ctggtttga 22885210  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgg--gnnnnnnngttcttttgacggac 214  Q
    |  || |||||||||| |  ||| |||||||||||||||||| ||||||||||||||||||||||| | ||| ||  |       ||||||| |  ||||    
T  22885209 tcctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggttgttttggtgttctttcggtggac 22885110  T
Q  215 cgaatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttggg 314  Q
    |  | |||||||| ||||||||| |||||||||| ||||||||||||||   || |||| |||||||   |||||||||||||||||||| |||||||||    
T  22885109 cagaggttgagaggtggtggaagttgattgatctatagaatagtggctcgttttaggtgatgaggacggtgtgtttcatttagaggggtgttattttggg 22885010  T
Q  315 ctgagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 382  Q
       || ||||  || |  ||||||||||  ||||| ||||||||||||| || || |||| |||||||    
T  22885009 acaagcagtggcgacgggggttatggatttcgtttgtcagtggtcgtttcgtgaaggagtctgtttta 22884942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 4471829 - 4471993
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||| ||||||||||||||| |||| ||   || |||||||| || ||||||||||||||||||| |||| ||||| |||| |||| |||| |||||    
T  4471829 ttgcttcaagatcgggagttggcgtctatctactttattgtttggctgactacagtgtttctctggtggaccgggggtaagggg-gcccgtctggtttgg 4471927  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |  || |||||||||| |  ||||| |||||||||||||||| ||||||||||||| |||||||||    
T  4471928 tcctggagtctggtgggccgatcgcctttgattcgagatcgggagtcagttctttgattcaagttt 4471993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 229 - 374
Target Start/End: Complemental strand, 43816418 - 43816273
Alignment:
Q  229 tggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtgatga 328  Q
    ||||||| |||||||||||||||||||||||||||   ||| ||| ||||||||| |||||||||||||||| ||| | ||| |||  ||||||||  ||    
T  43816418 tggtggaggctgattgatctttagaatagtggctctgttttagtgatgaggacaaggtgtttcatttagaggagtgttttttcgggaggagtagtggcga 43816319  T
Q  329 tgctggttatggataccgtttctcagtggtcgttttgtaaaagagt 374  Q
    |||||  |||||||||||||| |||||||| |||| || |||||||    
T  43816318 tgctgtgtatggataccgtttttcagtggttgtttcgtgaaagagt 43816273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 27739883 - 27740189
Alignment:
Q  19 gcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggtt 118  Q
    |||||||||||||||||| |  ||||||||  ||| |||||||  | |||| || ||||||||||| || | ||||  ||||||||| ||||  |||||     
T  27739883 gcttcgagatcgggagttagtgtctagctgctttcatgtttggcggactacggt-tttctctggtggactgggggttaggggtgcccatctggattggtc 27739981  T
Q  119 atgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgg--gnnnnnnngttcttttgacggaccg 216  Q
     || |||||||||| |  |||||||||||||| ||||||  |||||||  || ||||||||||| |  || ||  |       ||||||| |  |||||     
T  27739982 ctgaagtctggtgggccgatcgcttttgattcaagatcgagagtcagtgtttcggttcaagtttggtcttgggttgttttggtgttctttcggtggacca 27740081  T
Q  217 aatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggct 316  Q
     | |||||||| |||||||| ||||||||||| | |||||||||||||| || ||  |||||||||| |||||||||||||||||||| |||| |||| |    
T  27740082 gaggttgagaggtggtggaaactgattgatctatggaatagtggctcaacttaggcattgaggacaatgtgtttcatttagaggggtgttattctgggat 27740181  T
Q  317 gagtagtg 324  Q
    ||||||||    
T  27740182 gagtagtg 27740189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 123 - 324
Target Start/End: Complemental strand, 33788702 - 33788499
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgg--gnnnnnnngttcttttgacggaccgaatg 220  Q
    |||||||||| |  ||||||||||||||||||| || |||||||||||||||||| |||| | ||| ||  |       ||||||| |  | |||  | |    
T  33788702 agtctggtgggccgatcgcttttgattcgagattgggagtcagttctttggttcaggtttggctttgggttgttttggtgttctttcggtgaaccagagg 33788603  T
Q  221 ttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagt 320  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||  || |||| |||||||   |||||||||||||||||||| |||||||||  ||||    
T  33788602 ttgagaggtggtggaagctgattgatctatagattagtggctcagcttaggtgatgaggacggggtgtttcatttagaggggtgttattttgggacgagt 33788503  T
Q  321 agtg 324  Q
    ||||    
T  33788502 agtg 33788499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 31902587 - 31902425
Alignment:
Q  20 cttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggtta 119  Q
    ||||||| |||||||||||| | |||  | ||| | || ||||||||| | || ||||||||||| |||| ||||  |||||| |||||| ||||| |      
T  31902587 cttcgaggtcgggagttggcgtttagaggcattatggtgtggttggcttcggtatttctctggtggaccgggggttaggggtgtccttcttatttgatgc 31902488  T
Q  120 tgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    || |||||||||| | |||||||||| |||||||||||| |||||||||| ||||||||||||    
T  31902487 tgaagtctggtgggccaatcgcttttaattcgagatcgggagtcagttctctggttcaagttt 31902425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 29487037 - 29487210
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||||||  ||||||||  ||||||| |||  |||| | |||||||||||||| || | ||||  ||||||||| |||| ||||     
T  29487037 ttgcttcgagatcgggagttggtgtctagctgctttcttgtctggcgggct-cggtgtttctctggtggactgggggttaggggtgcccgtctggtttga 29487135  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg 192  Q
    |  || |||||||||| ||| |||||||||||||||||| |  ||||||||||| |||||| |||| | |||||||    
T  29487136 tcttgaagtctggtggccaa-tcgcttttgattcgagattgatagtcagttcttcggttcatgtttggtttttggg 29487210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 15710612 - 15710776
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||| |||||||||||||||  | ||| || | |||||||||| || ||| ||||||||||||||||||||  |||  ||||||||||||||||| |     
T  15710612 ttgctttgagatcgggagttggtgtttagttgcaatcttgtttggctgactatagtgtttctctggtgaaccggaggtgaggggtgcccttctgattaga 15710711  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
        |  |||||||| || |||| |||||||||||||||||  | |||||||||| |||||||||    
T  15710712 cccagatgtctggtgaaccaatcacttttgattcgagatcgtcaatcagttctttagttcaagtt 15710776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 137 - 363
Target Start/End: Original strand, 3745359 - 3745584
Alignment:
Q  137 atcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg---nnnnnnngttcttttgacggaccgaatgttgagagatggtg 233  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||          ||||||| |  ||| |  | ||| | |  |||||    
T  3745359 atcgcttttaattcgagatcggaagtcagttctttggtttaagttttgtttttgggcttttttgttgttctttcggtggatcagaggtttaaaagtggtg 3745458  T
Q  234 gaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtgatgatgctg 333  Q
    || ||||||||||||||||||||||||||||   | ||||  |||||||| ||||||||||||||||| |  || || |||  ||||| ||  |||||||    
T  3745459 gaggctgattgatctttagaatagtggctcagcatcggtgacgaggacaaggtgtttcatttagagggtt--ta-ttcgggaggagtattggcgatgctg 3745555  T
Q  334 gttatggataccgtttctcagtggtcgttt 363  Q
    |||||||||||||||| |||||||| ||||    
T  3745556 gttatggataccgttt-tcagtggttgttt 3745584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 15126579 - 15126421
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||       || ||||||||||| |||| ||||| ||||| ||| |||  || ||    
T  15126579 ttgcttcgagatcgggagttggcgtctagctgcattcttgtttggtt-------gtctttctctggtggaccgggggtaaggggttcccgtctcgttggg 15126487  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |  || |||||||||| |  |||  ||||||||||||||||| |||| ||||||||| ||| ||||    
T  15126486 tcctgaagtctggtgggccgatcatttttgattcgagatcgggagtcggttctttggctcatgttt 15126421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 182
Target Start/End: Original strand, 1269443 - 1269553
Alignment:
Q  72 tgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttcttt 171  Q
    ||||||||||||  ||| | |||  |||||||||||||||||| ||  |  |||||||||| |  ||| |||||||||||||||||||||||||||||||    
T  1269443 tgtttctctggtataccaaaggtgaggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttcttt 1269542  T
Q  172 ggttcaagttt 182  Q
    || ||||||||    
T  1269543 ggctcaagttt 1269553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 15723112 - 15723241
Alignment:
Q  52 tcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcg 151  Q
    ||||||||||  | ||| ||||||||||||||||||||  ||| |||||||||||||||||| |  | ||  ||||| || || |||| |||||||||||    
T  15723112 tcttgtttggcggactatagtgtttctctggtgaaccggaggtgtggggtgcccttctgattagactctgacgtctgatgaaccaatcacttttgattcg 15723211  T
Q  152 agatcggaagtcagttctttggttcaagtt 181  Q
    ||||||  ||| ||||||||| ||||||||    
T  15723212 agatcgtcagttagttctttgtttcaagtt 15723241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 3745272 - 3745356
Alignment:
Q  24 gagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttc 108  Q
    |||||||||||||||| |||||||| | ||| ||||||  ||||||  ||||||||||||| ||||||||||| |||||||||||    
T  3745272 gagatcgggagttggcgtctagctgcagtctcgtttggcaggctacgctgtttctctggtggaccgagggtatagggtgcccttc 3745356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 382
Target Start/End: Complemental strand, 13699170 - 13699094
Alignment:
Q  306 tattttgggctgagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 382  Q
    ||||||||| |||||||||  | ||||||||||| ||||||||| ||||||||||||| |||||||||| |||||||    
T  13699170 tattttgggatgagtagtggcgttgctggttatgtataccgtttttcagtggtcgtttcgtaaaagagtgtgtttta 13699094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 2062813 - 2062905
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctg 110  Q
    ||||||||||||||||||||||  |||||||| |||||||||||| |||||||  |  |||||||||| |||| ||||| ||||||||| ||||    
T  2062813 ttgcttcgagatcgggagttggtgtctagctgcattcttgtttggctggctacgatcattctctggtggaccg-gggtaaggggtgcccgtctg 2062905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 364
Target Start/End: Original strand, 20572265 - 20572342
Alignment:
Q  287 gtttcatttagaggggtgctattttgggctgagtagtgatgatgctggttatggataccgtttctcagtggtcgtttt 364  Q
    |||||||||||||||||| | ||||| | |||||||||  |||| |||||||||||| ||||| ||||||||||||||    
T  20572265 gtttcatttagaggggtgttcttttgaggtgagtagtggcgatggtggttatggatatcgtttttcagtggtcgtttt 20572342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 39338961 - 39338877
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||||| || |||||||  | ||||||||||| |  |||||||||||||||||||||| |||||||||||||  |||||||    
T  39338961 ggggtgccctgctaatttggtactatagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgactcaagtt 39338877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 27880185 - 27880140
Alignment:
Q  137 atcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||    
T  27880185 atcgattttgattcgagatcggaagtcagttatttggttcaagttt 27880140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 16959993 - 16960052
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |||||||||| |  |||||||||||||||||||||  |||||||||||||| ||||||||    
T  16959993 agtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagttt 16960052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 41086883 - 41086825
Alignment:
Q  98 gggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatc 156  Q
    |||||||||||||||||||| || |||||||||||   |||| ||||||||||||||||    
T  41086883 gggtgcccttctgatttggtcatatagtctggtgggtcaatcacttttgattcgagatc 41086825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 4472041 - 4472077
Alignment:
Q  229 tggtggaagctgattgatctttagaatagtggctcaa 265  Q
    |||| ||||||||||||||||||||||||||||||||    
T  4472041 tggtagaagctgattgatctttagaatagtggctcaa 4472077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 7874197 - 7874360
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||||||  |||||||| | || || |||  | | ||  ||||| |||| ||| ||||||||    ||||||||| |||||||||    
T  7874197 ttgcttcgagatcgggagttggtgtctagctgcaatcctgcttgacttgatatggtgtt-ctctagtgtaccgagggcgatgggtgccctgctgatttgg 7874295  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    || |  ||||||||||    ||| |||||||||||||||||| |||||| ||||||  |||||||    
T  7874296 ttctaaagtctggtgggtcgatcacttttgattcgagatcgggagtcagctctttgactcaagtt 7874360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 14405195 - 14405267
Alignment:
Q  109 tgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||||| |  |||||||||| |  ||| |||||||||||||||||| |||||| ||||||| |||||||    
T  14405195 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggctcaagtt 14405267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 36276256 - 36276200
Alignment:
Q  108 ctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtca 164  Q
    |||||||||||||| |||||||||| |   ||||||||||||||||||||| |||||    
T  36276256 ctgatttggttatggagtctggtgggctgttcgcttttgattcgagatcgggagtca 36276200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 13337233 - 13337343
Alignment:
Q  71 gtgtttctctggtgaaccgagggt-atggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttct 169  Q
    |||||||||||||| ||| ||||| | |||||||||||||||||||    |  |||||| ||| |  ||| |||||||||||| ||||||||||||||||    
T  13337233 gtgtttctctggtgtacc-agggtgagggggtgcccttctgatttgaccttaaagtctgatgggccgatcacttttgattcgaaatcggaagtcagttct 13337331  T
Q  170 ttggttcaagtt 181  Q
    |||  |||||||    
T  13337332 ttgactcaagtt 13337343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 37770764 - 37770717
Alignment:
Q  70 agtgtttctctggtgaaccgagggtatggggtgcccttctgatttggt 117  Q
    ||||||||||||||| |||||||||  ||||||||| |||||||||||    
T  37770764 agtgtttctctggtgtaccgagggtgaggggtgcccatctgatttggt 37770717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 2062917 - 2062959
Alignment:
Q  140 gcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||    
T  2062917 gcttttgattcgagatcgggagtcagctctttggctcaagttt 2062959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 24308648 - 24308594
Alignment:
Q  270 ggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtg 324  Q
    |||| ||||||  |||||||| ||||||||||||| ||||||||| |||||||||    
T  24308648 ggtgatgaggatgaagtgttttatttagaggggtgttattttgggatgagtagtg 24308594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 915508 - 915464
Alignment:
Q  137 atcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||    
T  915508 atcgcttttgattcgagatcgaaagtcagtt-tttgattcaagttt 915464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 10173630 - 10173589
Alignment:
Q  141 cttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |||||||||||||||||||||| |||| ||||| ||||||||    
T  10173630 cttttgattcgagatcggaagtaagttatttggctcaagttt 10173589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 16952302 - 16952229
Alignment:
Q  257 gtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtgatgatg 330  Q
    |||| |||| |||||||||||||||   | |||||||||||||||||| | ||| ||| |||||||||| ||||    
T  16952302 gtggatcaactttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 16952229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 17022967 - 17022894
Alignment:
Q  257 gtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtgatgatg 330  Q
    |||| |||| |||||||||||||||   | |||||||||||||||||| | ||| ||| |||||||||| ||||    
T  17022967 gtggatcaactttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 17022894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 17060273 - 17060200
Alignment:
Q  257 gtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtgatgatg 330  Q
    |||| |||| |||||||||||||||   | |||||||||||||||||| | ||| ||| |||||||||| ||||    
T  17060273 gtggatcaactttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 17060200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 16952434 - 16952394
Alignment:
Q  142 ttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  16952434 ttttgattcgagatcgggagccagttctttggctcaagttt 16952394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 17023099 - 17023059
Alignment:
Q  142 ttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  17023099 ttttgattcgagatcgggagccagttctttggctcaagttt 17023059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 17060405 - 17060365
Alignment:
Q  142 ttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  17060405 ttttgattcgagatcgggagccagttctttggctcaagttt 17060365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 17079199 - 17079239
Alignment:
Q  142 ttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  17079199 ttttgattcgagatcgggagccagttctttggctcaagttt 17079239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 23650396 - 23650444
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttcttt 171  Q
    |||||||||| |  |||||||||||||||||||||| ||||| ||||||    
T  23650396 agtctggtgggctgatcgcttttgattcgagatcgggagtcatttcttt 23650444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 27880100 - 27880052
Alignment:
Q  222 tgagagatggtggaagctgattgatctttagaatagtggctcaaatttg 270  Q
    |||||| ||||| ||||||||||||||| |||||| |||||||| ||||    
T  27880100 tgagaggtggtgaaagctgattgatcttgagaataatggctcaactttg 27880052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 30967191 - 30967151
Alignment:
Q  144 ttgattcgagatcggaagtcagttctttggttcaagttttg 184  Q
    ||||||| |||||| |||||||||||||| |||||||||||    
T  30967191 ttgattcaagatcgaaagtcagttctttgattcaagttttg 30967151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 96 - 382
Target Start/End: Complemental strand, 22568209 - 22567920
Alignment:
Q  96 tggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgggnnn 195  Q
    |||||||| ||||||||||||| |||| || |||| |   |||||||||||||||| |||||| ||| |||| |||||||||||||||||||||||        
T  22568209 tggggtgctcttctgatttggtcatgtggtttggtaggtcaatcgcttttgattcgtgatcgggagttagttttttggttcaagttttgattttggattt 22568110  T
Q  196 nnnng---ttcttttgacggaccgaatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttca 292  Q
        |   |||||| | ||||||||| |||||||| ||||| || |||||||||||||||||||||| | ||  |||||||  |||||||  ||||||||    
T  22568109 tttaggtgttctttcggcggaccgaaggttgagaggtggtgaaaactgattgatctttagaatagtgccccagctttggtgacgaggacatggtgtttca 22568010  T
Q  293 tttagaggggtgctattttgggctgagtagtgatgatgctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 382  Q
    |||  ||||||| |||||| || ||||||||| |||||||||||||||||||||||| |||||||| |||| || ||||||| |||||||    
T  22568009 ttttaaggggtgttatttttggatgagtagtggtgatgctggttatggataccgtttttcagtggttgtttcgtgaaagagtctgtttta 22567920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 11379309 - 11378958
Alignment:
Q  11 ttattcttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctg 110  Q
    ||||| ||| ||| ||||||||||||||  |||||||  | |||||||||| || |||| |||||||||||||| ||||||||| ||||||||||||||     
T  11379309 ttatttttgattcaagatcgggagttggtgtctagctacaatcttgtttggctgactacggtgtttctctggtggaccgagggtttggggtgcccttcta 11379210  T
Q  111 atttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgggnnnnnnngttctt-ttga 209  Q
    ||||||| |||||||||||||  |  |||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||       | | || |||     
T  11379209 atttggtcatgtagtctggtgagccgatcgcttttgattcgagatcgggagtcagtactttggttcaagttttggttttgggcttttttggtgttcttgg 11379110  T
Q  210 cggaccgaatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctatt 309  Q
      ||||  | ||| | || ||||||| |||||||||||||||||||| |||||||| |   ||| | ||||||| |||||||||||||||||||  | ||    
T  11379109 ttgaccagaggtttataggtggtggaggctgattgatctttagaataatggctcaactcctgtgataaggacaaggtgtttcatttagaggggt--tttt 11379012  T
Q  310 ttgggctgagtagtgatgatgctggttatggataccgtttctcagtggtcgttt 363  Q
    | |||  ||||||||  ||| |||||| ||||||| |||| |||||||| ||||    
T  11379011 tcgggaggagtagtggcgatactggttttggatactgtttttcagtggttgttt 11378958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 13311746 - 13312029
Alignment:
Q  20 cttcgagatcgggagttggcatctagctgtattcttgtttggt-tggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggtt 118  Q
    |||||||||||||||||||  |||| ||| |||||| ||| |  || || |  ||||||||||||| |||| || || ||||||||| |||| ||||||     
T  13311746 cttcgagatcgggagttggtgtctaactgcattcttattttgactgacttcgttgtttctctggtggaccggggataaggggtgcccgtctggtttggtc 13311845  T
Q  119 atgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgg--gnnnnnnngttcttttgacggaccg 216  Q
    |||||||||||||| |  ||| |||||||||||||||||| ||||||||||||||||||||||  |  || ||  |       ||||||| || ||||      
T  13311846 atgtagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagttaggtgttgggctgttttggcgttctttcgatggacta 13311945  T
Q  217 aatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagagg 300  Q
     | |||||||| |||||| ||||||||||| |||||||||||| ||||  || ||||  |||||| ||||||||||||||||||    
T  13311946 gaggttgagaggtggtgggagctgattgatatttagaatagtgtctcagcttaggtgacgaggacgaagtgtttcatttagagg 13312029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 38485462 - 38485610
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||||||| |||| ||||| |||||||| | ||| ||||||||||||||| ||||||||||||||| || | ||||| ||||||||||||||| || |    
T  38485462 ttgcttcgagttcgg-agttgacatctagcggcattattgtttggttggctatagtgtttctctggtggactgggggtaaggggtgcccttctgaatttg 38485560  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagt 166  Q
    || || |||||||||| |  ||| |||||||||||||||||| |||||||    
T  38485561 ttctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagt 38485610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 46133454 - 46133279
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||| |||||||||||||||  | ||   | ||| |||||||||||||| | |||||||||||||| ||||  |||  || |||||||||||||||||    
T  46133454 ttgctttgagatcgggagttggagtttaatggcattattgtttggttggcttcggtgtttctctggtggaccggaggttaggagtgcccttctgatttgg 46133355  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg 192  Q
    |  || |||||||||  |  ||||||||||||| |||||||| |||||||||| |||||||||||| | |||||||    
T  46133354 tgctgaagtctggtgagccgatcgcttttgatttgagatcgggagtcagttctctggttcaagtttggtttttggg 46133279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 1320699 - 1320874
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||||||  |||||||||| | ||||||||     |   ||||||||||| || | || ||||  ||||||||||| ||||||||    
T  1320699 ttgcttcgagatcgggagttggtgtctagctgtaattttgtttggcgcaatttggtgtttctctgatgtatcgggggtgaggggtgcccttttgatttgg 1320798  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg 192  Q
    | ||  |||||||||| |  ||| |||||||||| | |||||||||||||||||||| |||||||||| |||||||    
T  1320799 tcataaagtctggtgggccgatcacttttgattcaaaatcggaagtcagttctttggctcaagttttggttttggg 1320874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 229 - 324
Target Start/End: Complemental strand, 12546369 - 12546274
Alignment:
Q  229 tggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtg 324  Q
    ||||||||| ||||||||||||||||||||||||||  || |||| ||| |||  ||||||||||||||||||||| ||||||||| | |||||||    
T  12546369 tggtggaagttgattgatctttagaatagtggctcagcttaggtgatgacgacggagtgtttcatttagaggggtgttattttgggataagtagtg 12546274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 47457187 - 47457033
Alignment:
Q  21 ttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttat 120  Q
    ||||||||||||||||||| ||| |||| |||||||||||| | ||        |||||||||| | || ||||| ||||||||| ||||||| |||  |    
T  47457187 ttcgagatcgggagttggcgtctggctgcattcttgtttggctagca-------ttctctggtggatcgggggtaaggggtgcccgtctgattaggtcct 47457095  T
Q  121 gtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    | |||||| |||||  ||||||||||||| ||||| || |||||||||||||| ||||||||    
T  47457094 gaagtctgatggaccgatcgcttttgatttgagattgggagtcagttctttggctcaagttt 47457033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 6716857 - 6716747
Alignment:
Q  72 tgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttcttt 171  Q
    ||||||||||||| |||||| ||  ||||||||||||||||||  | ||  |||||||| | |  ||| |||||||||||||||||| ||||||||||||    
T  6716857 tgtttctctggtgtaccgagagtgaggggtgcccttctgatttaatcataaagtctggttggccgatcacttttgattcgagatcgggagtcagttcttt 6716758  T
Q  172 ggttcaagttt 182  Q
    || ||||||||    
T  6716757 ggctcaagttt 6716747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 12480873 - 12480965
Alignment:
Q  99 ggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgg 191  Q
    |||| ||||||||||| ||  || ||| |||||| |  |||||||||||||||||||||| ||||||||||||||||||||||| | ||||||    
T  12480873 ggtggccttctgattttgtcctgaagtttggtgggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttgg 12480965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 182
Target Start/End: Original strand, 8745112 - 8745223
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctt 170  Q
    |||||||||||||| |||||||||  |||||| ||||||||||||||  |  | |||||||| |  ||| |||||||||||||||||| | ||||||| |    
T  8745112 gtgtttctctggtgcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcgggattcagttcgt 8745211  T
Q  171 tggttcaagttt 182  Q
    ||| ||||||||    
T  8745212 tggatcaagttt 8745223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 16954638 - 16954733
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg 192  Q
    |||||||||||||||||||||  |  |||||||| |||  ||| |||||| |||||||||| ||||||||||||||  |||||||||| |||||||    
T  16954638 ggggtgcccttctgatttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttgactcaagttttggttttggg 16954733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 220 - 349
Target Start/End: Original strand, 9107271 - 9107400
Alignment:
Q  220 gttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgag 319  Q
    |||||||| ||||||| | ||  ||| ||||||||||||||||||| ||||||| ||||||    |||||||||||||||||| | ||||||||| ||||    
T  9107271 gttgagaggtggtggatgttgggtgaactttagaatagtggctcaactttggtgatgaggatgg-gtgtttcatttagaggggagttattttgggatgag 9107369  T
Q  320 tagtgatgat-gctggttatggataccgttt 349  Q
    |||||  ||| | |||||||||||| |||||    
T  9107370 tagtggcgatgggtggttatggatatcgttt 9107400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 25160777 - 25160867
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtca 164  Q
    ||||||||||| ||||||||   |||||||||| || |||||||| | |||||||||||||  ||  ||||||||||||||||||||||||    
T  25160777 tttctctggtgtaccgagggcgaggggtgccctgctaatttggttctatagtctggtggaccgattacttttgattcgagatcggaagtca 25160867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 24324920 - 24324799
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctt 170  Q
    |||||||| ||||| |||| || |  |||||||||||||||||||||  |  ||| |||||| |  |||  ||||||||||||||||| ||||| |||||    
T  24324920 gtgtttctttggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgggccgatcaattttgattcgagatcgggagtcaattctt 24324821  T
Q  171 tggttcaagttttgattttggg 192  Q
    ||| |||||||||| |||||||    
T  24324820 tggctcaagttttggttttggg 24324799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 192
Target Start/End: Complemental strand, 16829032 - 16828937
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg 192  Q
    |||||||||||||||||||||  |  |||||||| | |  ||| |||||| |||||||||| ||||||||||||||  |||||||||| |||||||    
T  16829032 ggggtgcccttctgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtcagttctttgactcaagttttggttttggg 16828937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 229 - 325
Target Start/End: Complemental strand, 9428067 - 9427969
Alignment:
Q  229 tggtggaagctgattgatctttagaatagtggctcaa---atttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtga 325  Q
    ||||||||||| |||||||| | ||||||||||||||   ||| |||||||||| | | || |||||||||||||| |||||||| ||| ||||||||||    
T  9428067 tggtggaagct-attgatctatggaatagtggctcaactaattaggtgttgaggtcgatgtatttcatttagagggatgctatttagggatgagtagtga 9427969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 48058625 - 48058580
Alignment:
Q  220 gttgagagatggtggaagctgattgatctttagaatagtggctcaa 265  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||    
T  48058625 gttgtgaggtggtggaagctgattgatctttagaatagtggctcaa 48058580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 6584894 - 6584970
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    |||||||||| ||||||||||| |  |||||||||| |  ||| |||||||||||||||||| |||||| |||||||    
T  6584894 ggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttgg 6584970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 10244144 - 10244251
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||||| |||| |||   |||||||||| || |||||||  | || |||||||| |  ||| |||||||||||||||||| |||||||||||||     
T  10244144 tttctctggtgtaccgggggagaggggtgccctgctaatttggtgctataatctggtgggccgatcacttttgattcgagatcgggagtcagttctttga 10244243  T
Q  174 ttcaagtt 181  Q
     |||||||    
T  10244244 ctcaagtt 10244251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 42533374 - 42533263
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctt 170  Q
    |||||||||||||| | || ||||  |||||||||| ||||||||||  |  |||||||||| |  ||| |||||||||||||||||| ||||| | |||    
T  42533374 gtgtttctctggtgcatcgggggtgaggggtgccctcctgatttggtcctaaagtctggtgggctgatcacttttgattcgagatcgggagtcaatcctt 42533275  T
Q  171 tggttcaagttt 182  Q
    ||| | ||||||    
T  42533274 tggcttaagttt 42533263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 173
Target Start/End: Original strand, 34389925 - 34390023
Alignment:
Q  75 ttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    |||||||||| || | ||||  || ||||||| ||||||||||| |  |||||||||| |  ||| |||||||||||||||||| |||||| |||||||    
T  34389925 ttctctggtgtactgggggtgaggagtgccctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttgg 34390023  T

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Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 36449043 - 36449152
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctt 170  Q
    |||||||||||||| | || ||||  ||||||||||||||||||| |  || ||||| |||| |  |||| |||| |||||||||  | |||||||||||    
T  36449043 gtgtttctctggtggatcgggggtgaggggtgcccttctgatttgatcttgaagtctagtgggcttatcg-tttttattcgagattaggagtcagttctt 36449141  T
Q  171 tggttcaagtt 181  Q
    |||||||||||    
T  36449142 tggttcaagtt 36449152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 48058710 - 48058665
Alignment:
Q  137 atcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  48058710 atcgcttttgatttgagatcggaagtcagttttttggctcaagttt 48058665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 38306246 - 38306330
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||||| || |||||||  | ||||||||||| |  ||| ||||||||||||||| || |||||||||||||  |||||||    
T  38306246 ggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagattgggagtcagttctttgactcaagtt 38306330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 5860384 - 5860309
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttg 172  Q
    |||||||||| || |||||||  | ||||| ||||| |  |||||||||||||||||||||| ||||| |||||||    
T  5860384 ggggtgccctgctaatttggtactatagtccggtgggcctatcgcttttgattcgagatcgggagtcaattctttg 5860309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 47326004 - 47325897
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||||| |||| |||   |||||||| | || |||||||  | ||||||||||| |  ||||||||||||| |||||||| |||||| ||||||     
T  47326004 tttctctggtgtaccgggggcgaggggtgccttgctaatttggtactatagtctggtgggccgatcgcttttgatttgagatcgggagtcagctctttga 47325905  T
Q  174 ttcaagtt 181  Q
     |||||||    
T  47325904 ctcaagtt 47325897  T

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Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 3478337 - 3478419
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaag 179  Q
    |||||||||||||| ||||||  |  ||| |||||| |  ||| |||||||||||||||||| ||| |||||||||| |||||    
T  3478337 ggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaag 3478419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 9428178 - 9428116
Alignment:
Q  120 tgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    ||||||||||||  |  ||| |||||||||||||||| ||||||||||||| ||||| |||||    
T  9428178 tgtagtctggtgagccgatcacttttgattcgagatcagaagtcagttcttcggttctagttt 9428116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 23983136 - 23983265
Alignment:
Q  52 tcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcg 151  Q
    |||||||||| ||| ||  |||||  ||||||| |||||||||  |||||||| |||| |||||||  || ||||||||||    |||| ||||||||||    
T  23983136 tcttgtttggctggttatggtgttcttctggtggaccgagggtgaggggtgcc-ttctaatttggtcttgaagtctggtgggtcgatcgtttttgattcg 23983234  T
Q  152 agatcggaagtcagttctttggttcaagttt 182  Q
    ||||||| ||||| ||| || | ||||||||    
T  23983235 agatcgggagtcaattccttagctcaagttt 23983265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 9349760 - 9349828
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg 192  Q
    |||||||||| |  ||| |||||||||||||||||| ||||| ||||  |||||||| ||||||||||||    
T  9349760 agtctggtgggccgatcacttttgattcgagatcgggagtcaattctcaggttcaag-tttgattttggg 9349828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 26386265 - 26386180
Alignment:
Q  103 cccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattt 188  Q
    ||||||||||||| || || |||  ||||| |  |||||||||||||||||||||| |||  ||||||   |||||||||||||||    
T  26386265 cccttctgatttgattttggagttcggtggtccgatcgcttttgattcgagatcgggagttcgttcttcaattcaagttttgattt 26386180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 1820072 - 1820012
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtttt 183  Q
    ||||||||||||  |||| |||||||||||||| || |||||  |||||| ||||||||||    
T  1820072 agtctggtggaccgatcgattttgattcgagatagggagtcaaatctttgattcaagtttt 1820012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 2613924 - 2613876
Alignment:
Q  136 aatcgcttttgattcgagatcggaagtcagttctttggttcaagttttg 184  Q
    |||| |||||||||||||||||||||| ||| | ||| |||||||||||    
T  2613924 aatcacttttgattcgagatcggaagttagtgccttgattcaagttttg 2613876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 33435138 - 33435178
Alignment:
Q  141 cttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||||||||||||| |||||||||||||  |||||||    
T  33435138 cttttgattcgagatcgggagtcagttctttgtctcaagtt 33435178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 35745879 - 35745839
Alignment:
Q  141 cttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    ||||||||||||||||||||||||  ||||||| |||||||    
T  35745879 cttttgattcgagatcggaagtcatctctttggctcaagtt 35745839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 37794974 - 37795058
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||||| || ||||||| || |||| |||||| |   ||  ||||||||||||||||| |||||||||||||  |||||||    
T  37794974 ggggtgccctgctaatttggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttctttgagtcaagtt 37795058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 47456993 - 47456949
Alignment:
Q  220 gttgagagatggtggaagctgattgatctttagaatagtggctca 264  Q
    |||| ||| ||||||||||| ||||||||||||||||||| ||||    
T  47456993 gttgtgaggtggtggaagctaattgatctttagaatagtgactca 47456949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 48162077 - 48162041
Alignment:
Q  142 ttttgattcgagatcggaagtcagttctttggttcaa 178  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  48162077 ttttgattcgagatcggaaatcagttctttggctcaa 48162041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 30935567 - 30935401
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgttt-ggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttg 115  Q
    |||||||||||| |||||||||| |||||| | ||| |||||| ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  30935567 ttgcttcgagattgggagttggcgtctagcggcattattgttttggttggctacagtgtttctctggtggaccgggggtaaggggtgcccttctgatttg 30935468  T
Q  116 gttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    ||| || ||| |||||| |  |||||||||||||| ||||||| ||| |||| ||||||||||||||    
T  30935467 gttttgaagtttggtgggctgatcgcttttgattcaagatcgggagttagttatttggttcaagttt 30935401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 21 - 303
Target Start/End: Original strand, 5556479 - 5556764
Alignment:
Q  21 ttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttat 120  Q
    ||||||||||| ||||||  |||||||    |||||||||  |||||||  ||||||||| ||| |||||| || |||||||||||| |||||||||  |    
T  5556479 ttcgagatcggaagttggtgtctagctaacatcttgtttgtctggctacgatgtttctctcgtggaccgagtgtttggggtgcccttttgatttggtctt 5556578  T
Q  121 gtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg---nnnnnnngttcttttgacggaccga 217  Q
    ||||||||||||    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||          ||||||| |  ||||||     
T  5556579 gtagtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagttttggttttgggcttttcaggtgttctttcggtggaccgg 5556678  T
Q  218 atgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggt 303  Q
    | ||| |||| ||||||| |||| ||||||||||||| ||||| |||  ||||||| | |||| || |||||||| ||||||||||    
T  5556679 aggtttagaggtggtggaggctggttgatctttagaaaagtggttcagctttggtgataaggataaggtgtttcagttagaggggt 5556764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 229 - 382
Target Start/End: Complemental strand, 25594493 - 25594339
Alignment:
Q  229 tggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctgagtagtgatga 328  Q
    |||||||||| |||||||||||||||||||||||||| ||||| |  ||||||  |||||| |||||||||| ||| ||| ||||| |||||||||  ||    
T  25594493 tggtggaagcggattgatctttagaatagtggctcaactttggagacgaggacggagtgttccatttagaggagtgttatcttgggatgagtagtggcga 25594394  T
Q  329 t-gctggttatggataccg-tttctcagtggtcgttttgtaaaagagtatgtttta 382  Q
    | | ||||| |||||| || ||| |||||||||||||||| || ||||||||||||    
T  25594393 tgggtggtt-tggatatcgttttttcagtggtcgttttgtgaaggagtatgtttta 25594339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 25594639 - 25594534
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||| | |||| |||||||||||||||||||  ||||||  |  ||||||||||  | |||||||||||||| ||||||||||| | ||||||||    
T  25594639 tttctctggcggaccgggggtatggggtgcccttctattttggtcctcaagtctggtgggtagatcgcttttgattctagatcggaagttaattctttgg 25594540  T
Q  174 ttcaag 179  Q
    ||||||    
T  25594539 ttcaag 25594534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 823611 - 823444
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||| ||||| ||||||||  ||||| || | |||||||||| | | ||  |||||||||||||| |||| |||||  |||||||||||  ||||||    
T  823611 ttgcttcaagatcaggagttggtgtctagttgcaatcttgtttggcttgttatggtgtttctctggtggaccgtgggtaaagggtgcccttcaaatttgg 823512  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttg 184  Q
    ||||| || ||  ||| |  ||| |||||||||||||||||  |||||||| |||  |||||||||||    
T  823511 ttatgaagactaatgggccgatcacttttgattcgagatcgagagtcagttgtttcattcaagttttg 823444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 14193925 - 14194011
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtttt 183  Q
    |||||||||||||||||||||  |  ||||||| ||||  ||| ||||||||||||||| || |||| ||||||||| |||||||||    
T  14193925 ggggtgcccttctgatttggtcctaaagtctggcggaccgatcacttttgattcgagattgggagtcggttctttggctcaagtttt 14194011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 14879421 - 14879514
Alignment:
Q  98 gggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgg 191  Q
    |||||||||||||||| |||  |  |||||||||| |  ||| |||||||||||||||||| |||| |||| |||| |||||||||| ||||||    
T  14879421 gggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtctgttcgttggatcaagttttggttttgg 14879514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 23328525 - 23328362
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||||||  |||||||| | | |||||||  | | ||  ||||| |||||||| |||| |||   ||||||||||  ||||||||    
T  23328525 ttgcttcgagatcgggagttggtgtctagctgcaattttgtttgacttgatatggtgtt-ctctggtgtaccgggggcgaggggtgccctgttgatttgg 23328427  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    || |  ||| ||||||||  ||| |||||||||||||||||| ||| || | ||||| |||||||    
T  23328426 ttctaaagtttggtggaccgatcacttttgattcgagatcgggagttagctttttggctcaagtt 23328362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 2392602 - 2392527
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttg 172  Q
    |||||||||| || |||||||  | ||| |||||||||  ||| ||||||||||||||| ||||||||||||||||    
T  2392602 ggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagttctttg 2392527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 2394349 - 2394274
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttg 172  Q
    |||||||||| || |||||||  | ||| |||||||||  ||| ||||||||||||||| ||||||||||||||||    
T  2394349 ggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagttctttg 2394274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 14755439 - 14755283
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||| || ||||||||| | |||||||| |   | |   |||||||||||||| ||||| |||  ||||||||||| |  ||| |    
T  14755439 ttgcttcgagatcgggagtcggtatctagctgcaatcttgtttcgcgcgttttggtgtttctctggtgtaccgaaggtgaggggtgccctttt--ttttg 14755342  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggtt 175  Q
    |  |  |||||||||| |  ||| |||||||||| ||||||| ||||||||||||||||    
T  14755341 tgctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagttctttggtt 14755283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 19176488 - 19176571
Alignment:
Q  98 gggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    ||||||||| || |||||||| |  |||||||||| |  ||| |||||||||||||||||| |||||||||||||  |||||||    
T  19176488 gggtgccctgctaatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 19176571  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 27398857 - 27399028
Alignment:
Q  11 ttattcttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctg 110  Q
    ||||| |||||||||||||||||||| |  |||||||  | |||||||||| ||||||  |||||||||| ||| |||  | |    ||||||||||||     
T  27398857 ttatttttgcttcgagatcgggagtttgtgtctagctacaatcttgtttggctggctatggtgtttctctagtggaccaggcgagatgggtgcccttcta 27398956  T
Q  111 atttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
     ||||||     ||||||||||   ||||||||| |||||||| || | |||||||| ||||||||||||||    
T  27398957 ttttggtccgaaagtctggtggcacaatcgctttagattcgaggtcaggagtcagttatttggttcaagttt 27399028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 47945619 - 47945785
Alignment:
Q  19 gcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaacc-gagggtatggggtgcccttctgatttggt 117  Q
    ||||||||||||||||||||| |||||| | |||||||||||| |    |||    |||||||||| ||| | ||||| ||||||||| |||| || |||    
T  47945619 gcttcgagatcgggagttggcgtctagcagcattcttgtttggcta---aca----ttctctggtggaccagggggtaaggggtgcccgtctggttgggt 47945711  T
Q  118 tatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg 192  Q
      |  |||| ||||| |  ||| |||||||||||||||||| |||||||| ||||| ||||| ||||||||||||    
T  47945712 cctaaagtccggtgggccgatcacttttgattcgagatcgggagtcagttatttggctcaag-tttgattttggg 47945785  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 33144019 - 33143950
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg 192  Q
    |||||||||||   ||| |||||||||||||||||| |||||||||||||| ||||| || | |||||||    
T  33144019 agtctggtggatcgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtttttggg 33143950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 45398781 - 45398865
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||||| ||||||||| | |  ||||||||||||  ||| |||||||||||||||||  |||||| |||||| || |||||    
T  45398781 ggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtcagctctttgatttaagtt 45398865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 1653064 - 1652897
Alignment:
Q  17 ttgcttcgagatcgggagttggcatct-agctgtattcttgtttggttggctacagtgtttctctggtgaaccgaggg-tatggggtgcccttctgattt 114  Q
    ||||||| ||||||||||||||| | | |||   ||| ||||||||   ||||||||| |||||||||  |||| ||| ||  | ||| |||||||||||    
T  1653064 ttgcttcaagatcgggagttggcgttttagcaacatttttgtttggcgagctacagtggttctctggtcgaccggggggtaatgagtgtccttctgattt 1652965  T
Q  115 ggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |||  || | ||| |||| |  ||| |||||||||||||||| | ||| |||||||||||||||||||    
T  1652964 ggtcctgaactcttgtgggccgatcacttttgattcgagatcaggagttagttctttggttcaagttt 1652897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 17550967 - 17551026
Alignment:
Q  122 tagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    ||||||||||| |  ||| |||||||||||||||||| |||||||||||||  |||||||    
T  17550967 tagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 17551026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 40023667 - 40023592
Alignment:
Q  98 gggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||| ||||||| ||| |  ||||||||||||  ||| |||||||||||||||||| ||||  ||||||||    
T  40023667 gggtgccctgctgattttgttttaaagtctggtggaccgatcacttttgattcgagatcgggagtcgattctttgg 40023592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 31424262 - 31424304
Alignment:
Q  138 tcgcttttgattcgagatcggaagtcagttctttggttcaagt 180  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||    
T  31424262 tcgcttttgattcgagatcgggagtcagtgctttgattcaagt 31424304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 34475873 - 34475783
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtca 164  Q
    ||||||||||| |||| |||   |||||||||| || ||||| || | ||||||||||| |  ||| |||||||||||||||||| |||||    
T  34475873 tttctctggtgtaccgggggcgaggggtgccctgctaatttgtttctatagtctggtgggccgatcacttttgattcgagatcgggagtca 34475783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 43012386 - 43012444
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||||| |  ||| |||||||||||||||||| |||||||||||||  |||||||    
T  43012386 agtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 43012444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 9584123 - 9584074
Alignment:
Q  123 agtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttg 172  Q
    |||||||||||   ||| |||||||||||||||||| |||||||||||||    
T  9584123 agtctggtggatcgatcacttttgattcgagatcgggagtcagttctttg 9584074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 30127287 - 30127319
Alignment:
Q  137 atcgcttttgattcgagatcggaagtcagttct 169  Q
    |||||||||||||||||||||| ||||||||||    
T  30127287 atcgcttttgattcgagatcgggagtcagttct 30127319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 30236265 - 30236139
Alignment:
Q  56 gtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagat 155  Q
    |||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||| || ||||||||||    |||||||||||||||||||    
T  30236265 gtttggttggctacggtgtttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagat 30236166  T
Q  156 cggaagtcagttctttggttcaagttt 182  Q
    ||| |||||||||||||||||||||||    
T  30236165 cgggagtcagttctttggttcaagttt 30236139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 17720880 - 17720572
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||| ||||||| |||||||| | |||||| |||||||||||| ||||| | ||||| |||||||| |||  ||||| ||||||||  |||| |||||    
T  17720880 ttgctttgagatcgagagttggcgtatagctgcattcttgtttggctggctcc-gtgttcctctggtggaccaggggtaaggggtgcctgtctggtttgg 17720782  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgggnnnnnnng---ttcttttgacgga 213  Q
    |  |  ||| |||||| |  ||||||||||||||| |||||| ||||||||||||||||||| ||| | |||||||       |   |||||| |  |||    
T  17720781 tcctaaagtatggtgggctgatcgcttttgattcg-gatcgggagtcagttctttggttcaa-tttaggttttgggctgttttggtgttctttcggtgga 17720684  T
Q  214 ccgaatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgg 313  Q
    |   | |||||||| ||||||||| ||||||||||||||||||||||||||||||  ||| |||||||  ||||||||||||||||||||    ||||||    
T  17720683 cttgaggttgagaggtggtggaagttgattgatctttagaatagtggctcaaattaagtgatgaggacggagtgtttcatttagaggggtttatttttgg 17720584  T
Q  314 gctgagtagtga 325  Q
    | ||||||||||    
T  17720583 ggtgagtagtga 17720572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 10552174 - 10552338
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||||||||||||||||||||  |||||   ||| ||||||| ||| ||||||||||||||||||  |||  ||| | |||||||||| |||||||||    
T  10552174 ttgcttcgagatcgggagttggcgcctagcgacattattgtttgattgactacagtgtttctctggtagaccaggggcaaggggtgccct-ctgatttgg 10552272  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    || || |||||||||| |  |||||||||||||| ||||||| |||||||||| |||||| |||||    
T  10552273 ttctgaagtctggtgggccgatcgcttttgattctagatcgggagtcagttctctggttctagttt 10552338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 35062362 - 35062527
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||||||| |||||  | ||| |||||||||||||||||||||||| |||    | |||||||| ||||||||  ||||||||||    
T  35062362 ttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttcactgaaagatcgagggtaaggggtgcctctctgatttgg 35062461  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    || || |||||||||| |  |||| ||||||||||||||||  |||||||||| | |||| |||||    
T  35062462 ttctgaagtctggtgggccgatcgattttgattcgagatcgagagtcagttctcttgttctagttt 35062527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 363
Target Start/End: Original strand, 15906595 - 15906941
Alignment:
Q  21 ttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttat 120  Q
    ||||||||||||||||||  |||| |||  |||||||  ||  |||||  ||||||||| |||| || | ||||   |||||||| | || ||||||  |    
T  15906595 ttcgagatcgggagttggtgtctaactgctttcttgtccggcgggctatggtgtttctcgggtggactgggggttaagggtgcccgtttggtttggtcct 15906694  T
Q  121 gtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttgggnnnnnnng---ttcttttgacggaccga 217  Q
    | |||||||||| |  ||| | |||||||||||||||| ||||||||||||||||||||||| | ||| ||        |   ||||||    |||||      
T  15906695 gaagtctggtgggccgatcacatttgattcgagatcgggagtcagttctttggttcaagtttggttttgggctgatttagtgtttctttcagtggaccag 15906794  T
Q  218 atgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgggctg 317  Q
    | ||| |||| ||||||||| |||||||| | ||||||||| |||||| || |||| ||||||||  |||||| |||||||| |||| ||||||||| ||    
T  15906795 aggttaagaggtggtggaagatgattgatttatagaatagtagctcaacttaggtgatgaggacagtgtgttttatttagagaggtgttattttgggatg 15906894  T
Q  318 agtagtg--atgatgctggttatggataccgtttctcagtggtcgttt 363  Q
    |||||||  |  ||| ||||||||||||| |||| |||||||||||||    
T  15906895 agtagtggcaacatg-tggttatggatactgtttttcagtggtcgttt 15906941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 18690341 - 18690501
Alignment:
Q  21 ttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttat 120  Q
    |||||||| |||||||||  | ||| || | |||||||||| || ||| ||||||||||||||||||||  |||  ||||||||||||||||| |         
T  18690341 ttcgagatagggagttggtgtttagttgcaatcttgtttggctgactatagtgtttctctggtgaaccggaggtgaggggtgcccttctgattagaccca 18690440  T
Q  121 gtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |  |||||||| || |||| |||||||||||||||||  | |||||||||| |||||||||    
T  18690441 gatgtctggtgaaccaatcacttttgattcgagatcgtcaatcagttctttagttcaagtt 18690501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 10248729 - 10248564
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||| ||  |||||||| | | |||||||| | | |   |||||||||||||| |||| ||||  |||||| |||||| |||| |    
T  10248729 ttgcttcgagatcgggagtcggtgtctagctgcaattttgtttggcttgatttggtgtttctctggtgtaccgggggtgaggggtgtccttctaattttg 10248630  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |  |  | | ||||||||  ||| |||||||||| ||||||| |||||||||||||| ||||||||    
T  10248629 tcctaaaatttggtggaccgatcacttttgattcaagatcgggagtcagttctttggctcaagttt 10248564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 15821497 - 15821400
Alignment:
Q  75 ttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttg 172  Q
    |||||||||| ||||||||   |||||||||| ||||||||||| |  |||||||||| |  ||| |||||||||||||||||| |||||| ||||||    
T  15821497 ttctctggtgtaccgagggcgaggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtcagctctttg 15821400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 37986977 - 37986870
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||||| |||| |||   |||||||||| || |||||||  | ||||||||||| | ||||  ||||||||||||||||| |||||||||||||     
T  37986977 tttctctggtgtaccgggggcgaggggtgccctgctaatttggtgttatagtctggtgggccaatcatttttgattcgagatcgggagtcagttctttga 37986878  T
Q  174 ttcaagtt 181  Q
     |||||||    
T  37986877 ctcaagtt 37986870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 32945832 - 32945714
Alignment:
Q  64 ggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtc 163  Q
    |||||| |||||||||| ||| ||||  |||| | ||||| ||||||||||| || || ||| | |||| |  ||| |||||||||||||||||| ||||    
T  32945832 ggctacggtgtttctctcgtggaccggaggtaagaggtgctcttctgatttgattctgaagtatagtgggctgatcacttttgattcgagatcgggagtc 32945733  T
Q  164 agttctttggttcaagttt 182  Q
    | ||||||| |||||||||    
T  32945732 aattctttgattcaagttt 32945714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 9519461 - 9519568
Alignment:
Q  74 tttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttgg 173  Q
    ||||||||||| |||| ||||  |||||||||| || |||||||  | |||||| |||| |  |||  ||||||||||||||||| |||||||||||||     
T  9519461 tttctctggtgtaccgggggtgaggggtgccctgctaatttggtactatagtctagtgggccgatcagttttgattcgagatcgggagtcagttctttga 9519560  T
Q  174 ttcaagtt 181  Q
     |||||||    
T  9519561 ctcaagtt 9519568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 31207457 - 31207374
Alignment:
Q  98 gggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    ||||||||| || |||||||  | ||||||||||| |  ||| |||||||||||||||||| |||||||||||||  |||||||    
T  31207457 gggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 31207374  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 17657054 - 17657013
Alignment:
Q  141 cttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |||||||||||||||||| |||||||||||||| ||||||||    
T  17657054 cttttgattcgagatcgggagtcagttctttggctcaagttt 17657013  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 41791320 - 41791275
Alignment:
Q  137 atcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |||||||||||||||||||||  ||||| |||||||||||||||||    
T  41791320 atcgcttttgattcgagatcgagagtcacttctttggttcaagttt 41791275  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 24995466 - 24995407
Alignment:
Q  122 tagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    ||||||||||| |  ||| |||||||||||||||||| |||||||||||||  |||||||    
T  24995466 tagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 24995407  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 41893471 - 41893412
Alignment:
Q  122 tagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    ||||||||||| | || | |||||||||||||||||| |||||||||||||  |||||||    
T  41893471 tagtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaagtt 41893412  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 16457513 - 16457473
Alignment:
Q  141 cttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||||||||||||| |||||||||||||  |||||||    
T  16457513 cttttgattcgagatcgggagtcagttctttgactcaagtt 16457473  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 34389101 - 34389017
Alignment:
Q  97 ggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
    |||||||||| || |||||||  | ||||||||||| |  ||| ||||||||||||||||   |||||||||||||  |||||||    
T  34389101 ggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcaagagtcagttctttgactcaagtt 34389017  T

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Target: scaffold1613 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 1192 - 825
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||||||||| |||||||||  |||||||| | ||||||||| |||  |   |||||||||||||| || | |  |  ||||| ||||||||||||||    
T  1192 ttgcttcgagattgggagttggtgtctagctgcaatcttgtttgattgattttggtgtttctctggtggactgggaatgaggggt-cccttctgatttgg 1094  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttttgattttggg---nnnnnnngttcttttgacgga 213  Q
    | ||| |||||||||| |  |||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |          ||||| | || | |    
T  1093 tcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttggtttaagttttggttttgaggttttttagtgttctctcgatgaa 994  T
Q  214 ccgaatgttgagagatggtggaagctgattgatctttagaatagtggctcaaatttggtgttgaggacaaagtgtttcatttagaggggtgctattttgg 313  Q
     || |  || |||  ||||||||| ||||||||||||||||||||||||||  |||| || ||||| |   |||||||||||||||||||| ||  ||||    
T  993 tcggagattaagaagtggtggaagatgattgatctttagaatagtggctcagttttgctgatgagggc-gggtgtttcatttagaggggtgttacgttgg 895  T
Q  314 gctgagtagtgatgatg-ctggttatggataccgtttctcagtggtcgttttgtaaaagagtatgtttta 382  Q
    | |||||||||| ||||  |||||||||||| |||||  ||||| || ||  || ||||||| |||||||    
T  894 gatgagtagtgacgatgagtggttatggatatcgttttccagtgatcattccgtgaaagagtctgtttta 825  T

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Target: scaffold0062 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 47033 - 47162
Alignment:
Q  52 tcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcg 151  Q
    |||||||||| || ||| |||||||||||||||||||| ||||  ||||||||||||||||| |    ||  |||||||| || |||| |||||||||||    
T  47033 tcttgtttggctgactatagtgtttctctggtgaaccgggggtgaggggtgcccttctgattagaccctgatgtctggtgaaccaatcacttttgattcg 47132  T
Q  152 agatcggaagtcagttctttggttcaagtt 181  Q
    |||||| || |||||||||| |||||||||    
T  47133 agatcgtaaatcagttctttagttcaagtt 47162  T

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Target: scaffold0062; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 59524 - 59688
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    |||||| |||||||||||||||  | ||| || | |||||||||| || ||| ||||||||||||||||||||  |||  ||||||||||||||||| |     
T  59524 ttgctttgagatcgggagttggtgtttagttgcaatcttgtttggctgactatagtgtttctctggtgaaccggaggtgaggggtgcccttctgattaga 59623  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagtt 181  Q
        |  |||||||| || |||| |||||||||||||||||  | |||||||||| |||||||||    
T  59624 cccagatgtctggtgaaccaatcacttttgattcgagatcgtcaatcagttctttagttcaagtt 59688  T

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Target: scaffold0062; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 71669 - 71798
Alignment:
Q  52 tcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcg 151  Q
    ||||||||||  | ||| ||||||||||||||||||||  ||| |||||||||||||||||| |  | ||  ||||| || || |||| |||||||||||    
T  71669 tcttgtttggcggactatagtgtttctctggtgaaccggaggtgtggggtgcccttctgattagactctgacgtctgatgaaccaatcacttttgattcg 71768  T
Q  152 agatcggaagtcagttctttggttcaagtt 181  Q
    ||||||  ||| ||||||||| ||||||||    
T  71769 agatcgtcagttagttctttgtttcaagtt 71798  T

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Target: scaffold0200 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 72 - 182
Target Start/End: Original strand, 19343 - 19453
Alignment:
Q  72 tgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttcttt 171  Q
    ||||||||||||  ||| | |||  |||||||||||||||||||||  |  |||||||||| |  ||| |||||||||||||||||||||||||||||||    
T  19343 tgtttctctggtataccaaaggtgaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttcttt 19442  T
Q  172 ggttcaagttt 182  Q
    || ||||||||    
T  19443 ggctcaagttt 19453  T

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Target: scaffold0119 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 42259 - 42149
Alignment:
Q  72 tgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttcttt 171  Q
    ||||||||||||  ||| | |||  |||||||||||||||||| ||  |  |||||||||| |  ||| |||||||||||||||||||||||||||||||    
T  42259 tgtttctctggtataccaaaggtgaggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttcttt 42160  T
Q  172 ggttcaagttt 182  Q
    || ||||||||    
T  42159 ggctcaagttt 42149  T

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Target: scaffold0050 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 36666 - 36767
Alignment:
Q  71 gtgtttctctggtgaaccgagggtatggggtgcccttctgatttggttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctt 170  Q
    |||||||||||||| |||||| ||  |||||||||||||||||||||  |  ||||||| || |  ||| |||||||||||||||||| |||||||||||    
T  36666 gtgtttctctggtgtaccgagagtgaggggtgcccttctgatttggtcctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagttctt 36765  T
Q  171 tg 172  Q
    ||    
T  36766 tg 36767  T

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Target: scaffold0063 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 58032 - 58197
Alignment:
Q  17 ttgcttcgagatcgggagttggcatctagctgtattcttgtttggttggctacagtgtttctctggtgaaccgagggtatggggtgcccttctgatttgg 116  Q
    ||||||||||||||||||| |   |||||||| | ||||||||||   | |   |||||||||||||| ||| ||||| |  |||||||||| |||||||    
T  58032 ttgcttcgagatcgggagtcgttgtctagctgcaatcttgtttggcgtgatttggtgtttctctggtgtacctagggtgtatggtgcccttcagatttgg 58131  T
Q  117 ttatgtagtctggtggacaaatcgcttttgattcgagatcggaagtcagttctttggttcaagttt 182  Q
    |  |  ||| |||||| |  ||| |||||||||| ||||||||||||| || ||||| ||||||||    
T  58132 tcctaaagtttggtgggccgatcacttttgattcaagatcggaagtcaattgtttggatcaagttt 58197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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