View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4890_low_5 (Length: 572)

Name: NF4890_low_5
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4890_low_5
NF4890_low_5
[»] chr7 (18 HSPs)
chr7 (192-507)||(10599716-10600025)
chr7 (318-507)||(14568350-14568539)
chr7 (74-175)||(10600410-10600511)
chr7 (318-476)||(41508093-41508251)
chr7 (318-400)||(42935447-42935529)
chr7 (421-507)||(10409789-10409877)
chr7 (325-471)||(14650104-14650247)
chr7 (374-476)||(14658771-14658873)
chr7 (388-471)||(13777702-13777786)
chr7 (318-476)||(20949066-20949223)
chr7 (326-398)||(17757486-17757558)
chr7 (330-459)||(46341502-46341631)
chr7 (326-413)||(37048576-37048663)
chr7 (318-355)||(17205122-17205159)
chr7 (431-509)||(42935834-42935913)
chr7 (322-367)||(29808443-29808488)
chr7 (320-460)||(12506703-12506843)
chr7 (424-476)||(45072515-45072567)
[»] chr1 (18 HSPs)
chr1 (318-476)||(17971359-17971517)
chr1 (318-507)||(32715686-32715874)
chr1 (319-507)||(27442338-27442525)
chr1 (319-505)||(28723932-28724117)
chr1 (319-476)||(3574720-3574879)
chr1 (333-476)||(13603078-13603224)
chr1 (318-467)||(36437205-36437354)
chr1 (431-507)||(45691567-45691643)
chr1 (322-476)||(9851810-9851963)
chr1 (329-467)||(39150187-39150324)
chr1 (318-507)||(28165091-28165280)
chr1 (391-476)||(42454869-42454954)
chr1 (318-467)||(42745537-42745685)
chr1 (326-476)||(31181048-31181199)
chr1 (322-408)||(17988348-17988434)
chr1 (321-476)||(31152431-31152584)
chr1 (321-355)||(31003698-31003732)
chr1 (323-476)||(46443700-46443851)
[»] chr2 (25 HSPs)
chr2 (323-507)||(14200333-14200516)
chr2 (325-507)||(7011095-7011274)
chr2 (330-507)||(32872346-32872523)
chr2 (330-476)||(31404951-31405096)
chr2 (318-476)||(38214106-38214264)
chr2 (319-476)||(39063591-39063748)
chr2 (318-476)||(40442711-40442869)
chr2 (318-476)||(40503868-40504026)
chr2 (322-476)||(38496470-38496624)
chr2 (391-476)||(44173636-44173721)
chr2 (336-506)||(2287486-2287654)
chr2 (318-476)||(3268791-3268949)
chr2 (318-476)||(3269350-3269508)
chr2 (318-476)||(3269909-3270067)
chr2 (336-419)||(34262721-34262803)
chr2 (424-507)||(34309311-34309394)
chr2 (336-506)||(2315509-2315677)
chr2 (319-460)||(16781256-16781396)
chr2 (326-476)||(4015785-4015934)
chr2 (319-476)||(40664228-40664386)
chr2 (386-507)||(45723883-45724004)
chr2 (318-416)||(3711895-3711992)
chr2 (403-476)||(21794914-21794988)
chr2 (318-355)||(21794849-21794886)
chr2 (319-370)||(35310800-35310852)
[»] chr8 (15 HSPs)
chr8 (318-507)||(38209485-38209674)
chr8 (318-507)||(36408151-36408339)
chr8 (318-467)||(36054809-36054958)
chr8 (378-507)||(5923871-5924004)
chr8 (318-476)||(8251229-8251387)
chr8 (319-476)||(31658847-31659003)
chr8 (319-476)||(2207766-2207921)
chr8 (374-476)||(2152369-2152472)
chr8 (319-476)||(16890265-16890425)
chr8 (321-476)||(1445349-1445504)
chr8 (403-476)||(30653628-30653701)
chr8 (318-372)||(21504882-21504936)
chr8 (320-413)||(30112485-30112578)
chr8 (377-413)||(4641095-4641131)
chr8 (319-354)||(35431579-35431614)
[»] chr4 (12 HSPs)
chr4 (326-507)||(25376810-25376991)
chr4 (318-467)||(18838745-18838893)
chr4 (319-419)||(54863918-54864018)
chr4 (326-424)||(21128097-21128195)
chr4 (375-507)||(25382400-25382531)
chr4 (374-476)||(31707349-31707448)
chr4 (324-467)||(16572251-16572391)
chr4 (320-413)||(33721675-33721768)
chr4 (319-456)||(34319546-34319682)
chr4 (318-413)||(44884411-44884507)
chr4 (318-475)||(42312399-42312564)
chr4 (326-400)||(47231644-47231718)
[»] chr3 (23 HSPs)
chr3 (318-507)||(30041272-30041460)
chr3 (378-506)||(35104722-35104850)
chr3 (330-413)||(49983561-49983644)
chr3 (318-476)||(41559980-41560132)
chr3 (386-476)||(43105144-43105234)
chr3 (318-476)||(45261357-45261512)
chr3 (318-476)||(40344929-40345085)
chr3 (326-467)||(22923629-22923773)
chr3 (403-507)||(49983786-49983892)
chr3 (358-489)||(30577821-30577952)
chr3 (326-396)||(43105935-43106004)
chr3 (320-476)||(17003574-17003729)
chr3 (319-428)||(32211834-32211943)
chr3 (322-489)||(24650120-24650285)
chr3 (319-476)||(8825356-8825511)
chr3 (318-455)||(38854607-38854744)
chr3 (327-440)||(25295085-25295198)
chr3 (318-467)||(46918469-46918617)
chr3 (319-476)||(35455302-35455455)
chr3 (351-460)||(49787770-49787879)
chr3 (318-410)||(43320194-43320286)
chr3 (422-476)||(42279233-42279287)
chr3 (170-202)||(2567789-2567821)
[»] chr6 (9 HSPs)
chr6 (336-507)||(9425503-9425675)
chr6 (333-476)||(6657887-6658029)
chr6 (318-507)||(19780224-19780413)
chr6 (319-476)||(180334-180491)
chr6 (363-476)||(34837147-34837260)
chr6 (318-467)||(606623-606772)
chr6 (326-413)||(1856752-1856839)
chr6 (421-476)||(12143716-12143771)
chr6 (271-303)||(30627822-30627854)
[»] scaffold0015 (1 HSPs)
scaffold0015 (318-504)||(38802-38987)
[»] scaffold0006 (1 HSPs)
scaffold0006 (333-476)||(131735-131881)
[»] scaffold0836 (1 HSPs)
scaffold0836 (318-467)||(3015-3164)
[»] scaffold1809 (1 HSPs)
scaffold1809 (319-467)||(503-651)
[»] scaffold0088 (1 HSPs)
scaffold0088 (318-476)||(51266-51424)
[»] chr5 (13 HSPs)
chr5 (380-476)||(11691056-11691152)
chr5 (323-467)||(27193009-27193153)
chr5 (325-471)||(17693562-17693705)
chr5 (322-370)||(1962962-1963010)
chr5 (328-431)||(3257251-3257354)
chr5 (320-460)||(6688782-6688924)
chr5 (318-476)||(18704992-18705150)
chr5 (322-467)||(3629215-3629360)
chr5 (326-477)||(17686233-17686384)
chr5 (364-467)||(2225619-2225722)
chr5 (345-440)||(11983614-11983709)
chr5 (318-353)||(23010685-23010720)
chr5 (391-467)||(14917792-14917865)
[»] scaffold0024 (1 HSPs)
scaffold0024 (318-474)||(154333-154489)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 192 - 507
Target Start/End: Complemental strand, 10600025 - 10599716
Alignment:
Q  192 atttattttttgttgtagaatcattaacatgtgctcaaataaaaattgttactataatttttaatttctaatgtgataatactcactccggtctcattta 291  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||| ||||||    
T  10600025 atttattttttgttctagaatcattaac--gtgctcaaataaaaattgttaatgtcaattttaatttctaatgtgataatactcactccggtcccattta 10599928  T
Q  292 taagaaaaatttnnnnnnnnnnnnnntttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctca 391  Q
    |||||||| |||                | ||||||||||||||||||||||||||||||| || |||||||||||||||| | |||||||||||| |||    
T  10599927 taagaaaatttttaaaaaaaaaaa----ttgtcctatttataagaaaaagtcacaacttttgaggtacatttattgtttgaaaaacttttctaaccttca 10599832  T
Q  392 tttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaactta 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |    
T  10599831 tttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttgtaaaatcattcaaaacattgcaacaactaa 10599732  T
Q  492 tcattgtcttggtttt 507  Q
    ||| ||||||||||||    
T  10599731 tcaatgtcttggtttt 10599716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 318 - 507
Target Start/End: Original strand, 14568350 - 14568539
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    ||||||||||| |||||||||||||  |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||| || | |||    
T  14568350 tttggtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattag 14568449  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    || ||||||| ||||||||| ||| || ||  | ||||||||| ||||||||||||||| ||| ||| |||| || ||||||||||||||    
T  14568450 tgggtatattgaatacttcaaaaatttataatacggtatatttgtaaaaacattcaaaatattacaataactaatgattgtcttggtttt 14568539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 10600511 - 10600410
Alignment:
Q  74 cgtagcatagaatatgaagagtgttaaatgcctagtgttattatgatggcgctaaaacctattttaaggatcttttaccaatatttggctatttatttat 173  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  10600511 cgtagcatagaagatgaagagtgttaaatgcctagtgttattatgatggcgccaaaacctattttaaggatcttttaccaatatttgactatttatttat 10600412  T
Q  174 ac 175  Q
    ||    
T  10600411 ac 10600410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 41508093 - 41508251
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    ||||||||||  ||||||||||  |||||| ||||||| |  | |||||| || | |||||||| || |||| ||||||||||| ||||||||||| |||    
T  41508093 tttggtcctaaatataagaaaatatcacaatttttaaggtgtagttattgcttaaaagacttttttaccccttatttaatgtttgtctttttaatattag 41508192  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    || || |||||||| ||||||||  |||||||||||||||||| |||||||||||||||    
T  41508193 tgggtgtatttaatgcttcacaattttttatgagggtatatttgtaaaaacattcaaaa 41508251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 400
Target Start/End: Original strand, 42935447 - 42935529
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtt 400  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||  |||||||||||||    
T  42935447 tttggttctatttataagaaaaagtcacaacttttgagatacatttattgtttaaaagatttttctaattctcatttaatgtt 42935529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 421 - 507
Target Start/End: Original strand, 10409789 - 10409877
Alignment:
Q  421 gtatatttaatacttcacaaaattttatgagggtatatttataaaaacattc--aaaacattgcaacaacttatcattgtcttggtttt 507  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||| |||||||||||| || ||||| ||||||||    
T  10409789 gtatatttaatacttcacaaatttttaagagggtatatttataaaaacattcaaaaaaaattgcaacaactaatgattgttttggtttt 10409877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 471
Target Start/End: Complemental strand, 14650247 - 14650104
Alignment:
Q  325 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaac-cctcatttaatgtttatctttttaataatagtgtgta 423  Q
    ||||||||||||||| ||||||| |||||||||  ||||||||  | | |||||||| | |  ||||||| |||||||||| |||||||| |||||  ||    
T  14650247 ctatttataagaaaatgtcacaatttttaagatgtatttattgcataaaagactttttttagtcctcattcaatgtttatcattttaatactagtggata 14650148  T
Q  424 tatttaatacttcacaaaattttatgagggtatatttataaaaacatt 471  Q
    ||||    |||||| ||||||||| |||||||||||| ||||||||||    
T  14650147 tatt----acttcataaaattttacgagggtatatttgtaaaaacatt 14650104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 476
Target Start/End: Complemental strand, 14658873 - 14658771
Alignment:
Q  374 agacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattca 473  Q
    ||||||||  || |||| |||||||||||||||||||||| |||||   ||||||||||||||| |   |||||||||||||||||| |||||||||| |    
T  14658873 agactttttcaatcctcgtttaatgtttatctttttaatactagtggaaatatttaatacttcatatgtttttatgagggtatatttgtaaaaacattta 14658774  T
Q  474 aaa 476  Q
    |||    
T  14658773 aaa 14658771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 471
Target Start/End: Original strand, 13777702 - 13777786
Alignment:
Q  388 ctcatttaatgtttatctttttaa-taatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacatt 471  Q
    |||||||||| ||| ||||||||| || ||||  ||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  13777702 ctcatttaatatttgtctttttaagtattagtaagtatatttaatacttcacaaatttttatgaacgtatatttataaaaacatt 13777786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 20949066 - 20949223
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||| ||||||||||||||| |||| |||||||||| |  | |||||| || |  || |||| || |||| ||||||||| | |||||| |||| |||    
T  20949066 tttggttctatttataagaaaatgtcataacttttaaggtgtagttattgcttaaatgatttttttatccct-atttaatgtctctcttttgaatattag 20949164  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    | ||| ||||||||  |||||||  |||||||||||||||||| |||||| ||| ||||    
T  20949165 tatgtgtatttaatgtttcacaattttttatgagggtatatttgtaaaaatatttaaaa 20949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 17757558 - 17757486
Alignment:
Q  326 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatg 398  Q
    |||||||||||||||| ||||||||||||| ||||||||||| || | |||| ||| ||||||| ||||||||    
T  17757558 tatttataagaaaaagacacaacttttaaggtacatttattgcttaaaagacatttttaaccctaatttaatg 17757486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 459
Target Start/End: Original strand, 46341502 - 46341631
Alignment:
Q  330 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 429  Q
    ||||||||||  |||||||||||||| |  | |||||| || | |||||| |||| | || ||||| ||||| | ||||| ||||||||| || ||||||    
T  46341502 tataagaaaatatcacaacttttaaggtgtagttattgcttaaaagacttctctaccacttatttattgtttttgtttttgataatagtgggtgtattta 46341601  T
Q  430 atacttcacaaaattttatgagggtatatt 459  Q
    || ||||||||  ||||| |||||||||||    
T  46341602 atgcttcacaactttttacgagggtatatt 46341631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 37048576 - 37048663
Alignment:
Q  326 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 413  Q
    ||||||||||||||  |||||||||||||  |  | | ||||||| | ||||||||||| || | |||||||||||||||||||||||    
T  37048576 tatttataagaaaatatcacaacttttaaagtgtagtgattgtttaaaagacttttctaccctttatttaatgtttatctttttaata 37048663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 17205122 - 17205159
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaag 355  Q
    |||||||||||||||||||||| |||||||||||||||    
T  17205122 tttggtcctatttataagaaaatgtcacaacttttaag 17205159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 509
Target Start/End: Original strand, 42935834 - 42935913
Alignment:
Q  431 tacttcacaaaattttatgagggtatatttataaaaacat-tcaaaacattgcaacaacttatcattgtcttggtttttg 509  Q
    ||||||||||  ||||| |||||||||||| |||||||||   |||| |||||||||||| || ||||||||| ||||||    
T  42935834 tacttcacaagtttttaagagggtatatttgtaaaaacatgaaaaaaaattgcaacaactaatgattgtcttgatttttg 42935913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 367
Target Start/End: Original strand, 29808443 - 29808488
Alignment:
Q  322 gtcctatttataagaaaaagtcacaacttttaagatacatttattg 367  Q
    |||||||||||||||||||| ||||||||||| | | |||||||||    
T  29808443 gtcctatttataagaaaaagccacaacttttacggtgcatttattg 29808488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 460
Target Start/End: Original strand, 12506703 - 12506843
Alignment:
Q  320 tggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 419  Q
    ||||||||  ||||||||||  | |||||||||||| |  | ||||||||  | ||||||||||| |||| ||||||||| | | ||||||||   |||     
T  12506703 tggtcctaaatataagaaaatattacaacttttaaggtgtagttattgttcaaaagacttttctatcccttatttaatgtgtttgtttttaatctcagta 12506802  T
Q  420 tgtatatttaatacttcacaaaattttatgagggtatattt 460  Q
     || |||||| |  |||||||  ||||||||||||||||||    
T  12506803 agtgtatttattgtttcacaattttttatgagggtatattt 12506843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 476
Target Start/End: Complemental strand, 45072567 - 45072515
Alignment:
Q  424 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |||||||| |||||||   ||||||||| ||||||||||||||| ||||||||    
T  45072567 tatttaatgcttcacagttttttatgagagtatatttataaaaatattcaaaa 45072515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 318 - 476
Target Start/End: Complemental strand, 17971517 - 17971359
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||| | |||||||||||||||||||||||||||  |||||| |||| |||    
T  17971517 tttggtcctatttataagaaaaagtcacaacttttaaggtatatttattgtttaaaagacttttctaaccctcatttaatgttggtcttttcaatattag 17971418  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  17971417 tgtgtatatttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaa 17971359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 318 - 507
Target Start/End: Original strand, 32715686 - 32715874
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||||||||||||||||||||||||| ||||||| | |||||||||||| | || |||||||| ||||||||||||||| ||||||| |||| |||    
T  32715686 tttggtcctatttataagaaaaagtcacaaattttaaggt-catttattgtttaaaagtcttttctagccctcatttaatgttgatcttttcaatattag 32715784  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    || ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||| |||||||| || ||||||||||||||    
T  32715785 tgggtatatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggtttt 32715874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 319 - 507
Target Start/End: Complemental strand, 27442525 - 27442338
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    |||||||||||||||||||||| |||||||||||||  || ||||| ||||| | |||||||||||||||||||||||||||  |||||  |||| || |    
T  27442525 ttggtcctatttataagaaaaaatcacaacttttaaagtatatttagtgtttaaaagacttttctaaccctcatttaatgttggtctttc-aatattaat 27442427  T
Q  419 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    | ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||||||||| || ||||||||||||||    
T  27442426 gggtatatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattgcaacaactaatgattgtcttggtttt 27442338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 319 - 505
Target Start/End: Complemental strand, 28724117 - 28723932
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    ||||||| || |||||||||||||||||||||| | | | |||||||| ||| | |||||||||||||||||| ||||||||||||||||||||| ||||    
T  28724117 ttggtccaatatataagaaaaagtcacaactttaatg-tgcatttattatttaaaagacttttctaaccctcaattaatgtttatctttttaatattagt 28724019  T
Q  419 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtt 505  Q
    |  |||||||||||||||||||| |||||||||||||||| | ||||| ||||||||| ||| ||||  || || ||||||||||||    
T  28724018 ggttatatttaatacttcacaaatttttatgagggtatatctgtaaaagcattcaaaaaattacaaccgctaatgattgtcttggtt 28723932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 319 - 476
Target Start/End: Original strand, 3574720 - 3574879
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    ||||||||||||||||||||| |||||||||||| | ||  | ||||||||| | | | || |||| ||||||||||||||||||| |||||||| || |    
T  3574720 ttggtcctatttataagaaaatgtcacaacttttcaaatgtagttattgtttaaaaaatttgtctacccctcatttaatgtttatcattttaatattaat 3574819  T
Q  419 gtgtat--atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
     || ||  |||||||| |||||||  |||||| || ||||||||||||||||||||||||    
T  3574820 ttgaatgtatttaatatttcacaattttttataagagtatatttataaaaacattcaaaa 3574879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 333 - 476
Target Start/End: Original strand, 13603078 - 13603224
Alignment:
Q  333 aagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaat- 431  Q
    ||||||||||||||||||| ||| | |||||||||||  | |||||||||||||| ||| | || |||| ||||||||||| |||||  ||||||||||     
T  13603078 aagaaaaagtcacaacttt-aaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaata 13603176  T
Q  432 --acttcacaaaattttatgagggtatatttat-aaaaacattcaaaa 476  Q
      |||||||||| |||||||||||||||||| | ||||||||||||||    
T  13603177 atacttcacaaatttttatgagggtatatttgtaaaaaacattcaaaa 13603224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 467
Target Start/End: Complemental strand, 36437354 - 36437205
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||||||||||||||||| |||||||||||||||  | | |||||| || | |||||||| || |||||||||||||| | ||||||||||| |||    
T  36437354 tttggtcctatttataagaaaatgtcacaacttttaag-gatagttattgcttaaaagacttttttatccctcatttaatgtctgtctttttaatattag 36437256  T
Q  418 tgtg-tatatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    || | | ||||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  36437255 tgggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaa 36437205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 431 - 507
Target Start/End: Complemental strand, 45691643 - 45691567
Alignment:
Q  431 tacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    ||||||||||| |||||||||||||||||| |||||| |||||||| ||| |||||||| || ||||||||||||||    
T  45691643 tacttcacaaatttttatgagggtatatttgtaaaaatattcaaaaaattacaacaactaataattgtcttggtttt 45691567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 476
Target Start/End: Complemental strand, 9851963 - 9851810
Alignment:
Q  322 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg 421  Q
    |||||||||||||||||| ||||||||||||||  |  | |||||| || |  ||| ||| || |||| ||||||||||| |||||| |||| ||||| |    
T  9851963 gtcctatttataagaaaatgtcacaacttttaaagtgtagttattgcttaaatgacctttttatccct-atttaatgtttctcttttaaatattagtggg 9851865  T
Q  422 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    ||||||||||  ||||||  ||||||| | ||||||||| |||||| ||||||||    
T  9851864 tatatttaatgtttcacagtattttataaaggtatatttgtaaaaatattcaaaa 9851810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 39150324 - 39150187
Alignment:
Q  329 ttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattt 428  Q
    |||||||||||  |||| ||||||||| |  | |||||| || | ||||||||||| |||| ||||||||||| | ||||||||| || || || |||||    
T  39150324 ttataagaaaatatcactacttttaaggtgtagttattgcttaaaagacttttctaccccttatttaatgtttttgtttttaatattaatgagtgtattt 39150225  T
Q  429 aatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    ||| |||||| || |||||||||||||||||| ||||||    
T  39150224 aatgcttcac-aacttttatgagggtatatttgtaaaaa 39150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 318 - 507
Target Start/End: Complemental strand, 28165280 - 28165091
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||| |||||||||| |||| ||||||||||| ||| || | |||||| || | ||| |||| || |||||||| | | ||||||||||||||| | |    
T  28165280 tttggttctatttataataaaatgtcacaactttaaaggtatagttattgcttaaaagatttttttacccctcattaagtctttatctttttaatattgg 28165181  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    |   | ||||||||  |||||||  |||||| ||||||||||| |||||| |||||||| ||| ||| || | || ||||| ||||||||    
T  28165180 tagatgtatttaatgtttcacaattttttataagggtatatttgtaaaaatattcaaaaaattacaataattgatgattgtattggtttt 28165091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 391 - 476
Target Start/End: Complemental strand, 42454954 - 42454869
Alignment:
Q  391 atttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |||||| |||| ||||||||||| ||||| || |||||||| ||||| ||  ||||||||||||||||||||||||| ||||||||    
T  42454954 atttaacgtttgtctttttaatattagtgagtgtatttaatgcttcataattttttatgagggtatatttataaaaatattcaaaa 42454869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 467
Target Start/End: Original strand, 42745537 - 42745685
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||||||||||||||||| ||||||| |||| |  || | ||||||||| | | |||||| || ||||||||||| | ||  |||||||||| |||    
T  42745537 tttggtcctatttataagaaaatgtcacaatttttgaagtataattattgtttaaaatactttt-tatccctcatttaaggattgcctttttaatattag 42745635  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    ||  | ||||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  42745636 tggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaa 42745685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 476
Target Start/End: Complemental strand, 31181199 - 31181048
Alignment:
Q  326 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatg-tttatctttttaataatagtgtgtat 424  Q
    |||||||||||||| ||||||||||||||  || | ||||||||| | |||||||| ||  | |||||||||| ||| | ||||||||| ||| | || |    
T  31181199 tatttataagaaaatgtcacaacttttaacttatagttattgtttaaaagacttttttacacttcatttaatgttttttttttttaatattagcgagtgt 31181100  T
Q  425 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |||||||  |||||||  || ||| |||||||| || |||||| ||||||||    
T  31181099 atttaatgtttcacaattttctataagggtatacttgtaaaaatattcaaaa 31181048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 17988434 - 17988348
Alignment:
Q  322 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttt 408  Q
    |||||| ||||||||||| ||||||||||||||| |  | ||||||||| | |||||||| || |||| |||||||| || ||||||    
T  17988434 gtcctacttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttttaccccttatttaatgcttctctttt 17988348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 321 - 476
Target Start/End: Original strand, 31152431 - 31152584
Alignment:
Q  321 ggtcctatttataagaaaaag-tcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 419  Q
    |||||||||||||| | |||  ||||||||||||||||    |||||| || | ||||||| ||| |||||||||||||||| || |||||||| |||||    
T  31152431 ggtcctatttataaaagaaatatcacaacttttaagatgtcgttattgcttaaaagactttgctacccctcatttaatgtttctc-ttttaatattagtg 31152529  T
Q  420 tgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
        ||||||||  |||||  | ||||||||| |||||||| |||||| ||||||||    
T  31152530 aacgtatttaatgtttcac--atttttatgagcgtatatttgtaaaaatattcaaaa 31152584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 355
Target Start/End: Complemental strand, 31003732 - 31003698
Alignment:
Q  321 ggtcctatttataagaaaaagtcacaacttttaag 355  Q
    ||||||||||||||||||| |||||||||||||||    
T  31003732 ggtcctatttataagaaaatgtcacaacttttaag 31003698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 476
Target Start/End: Original strand, 46443700 - 46443851
Alignment:
Q  323 tcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 422  Q
    ||||||||||||||||| ||||||||||||||| |  | |||||  || | | |||||| || ||||||||| ||  || ||||||||||  |||||  |    
T  46443700 tcctatttataagaaaacgtcacaacttttaaggtgtaattattacttaaaaaacttttttatccctcattt-atagttctctttttaatgttagtgaat 46443798  T
Q  423 atatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
     ||| ||||  ||||| || ||||||| |||||||||| |||||| ||||||||    
T  46443799 gtatataatgtttcac-aatttttatgtgggtatatttgtaaaaatattcaaaa 46443851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 323 - 507
Target Start/End: Complemental strand, 14200516 - 14200333
Alignment:
Q  323 tcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 422  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||| ||||||| |||| ||||| ||    
T  14200516 tcctatttataagaaaa-gtcacaacttttaagatacatttattatttaaaagacttttttaaccctcatttaatgttgatcttttcaatattagtgagt 14200418  T
Q  423 atatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||   | |||| || ||||||||||||||    
T  14200417 atatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattaggataactaatgattgtcttggtttt 14200333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 325 - 507
Target Start/End: Original strand, 7011095 - 7011274
Alignment:
Q  325 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 424  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||    |||||||| |||| ||||| ||||    
T  7011095 ctatttataagaaaaagtcacaatttttaagatacatttattgtttaaaagacttttctaaccctcatttaa----tatcttttcaatattagtgggtat 7011190  T
Q  425 atttaatacttcacaaaattttatgagggtatatttataaaaacattc-aaaacattgcaacaacttatcattgtcttggtttt 507  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||||| |||| ||||||||||||  | ||||||||| ||||    
T  7011191 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactactgattgtcttgatttt 7011274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 330 - 507
Target Start/End: Original strand, 32872346 - 32872523
Alignment:
Q  330 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 429  Q
    |||||||||||||    ||||||||| |||||||||||||| | ||||||||| |||||| ||||||||||| || |||||||| ||||| |||||||||    
T  32872346 tataagaaaaagttgtgacttttaagttacatttattgtttaaaagacttttccaaccctaatttaatgtttgtccttttaatattagtgggtatattta 32872445  T
Q  430 atacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| ||| |||| ||| || ||||||||||||||    
T  32872446 atacttcacaattttttatgagggtatatttgtaaaaacattcaaaaaattacaaccactaatgattgtcttggtttt 32872523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 330 - 476
Target Start/End: Original strand, 31404951 - 31405096
Alignment:
Q  330 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 429  Q
    ||||||||||||||| |  ||||||| |||||||||| ||| | |||||||||||||||||||||||| ||| ||||||||||| |||||  ||||||||    
T  31404951 tataagaaaaagtcatat-ttttaaggtacatttattttttaaaagacttttctaaccctcatttaatatttgtctttttaatattagtgcatatattta 31405049  T
Q  430 atacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |||||||| ||| || ||||||| ||||||| |||||| ||||||||    
T  31405050 atacttcataaatttctatgaggatatatttgtaaaaatattcaaaa 31405096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 38214106 - 38214264
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||| |||||||||||||| |||||||||||||| |  ||||||||||| | |||||||| || ||||||||||||  || ||||||||||| |||    
T  38214106 tttggtccaatttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatatccctcatttaatacttctctttttaatattag 38214205  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    | ||| ||||||||  |||||||  |||||||||| ||||||| |||||| ||||||||    
T  38214206 tatgtgtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaa 38214264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 319 - 476
Target Start/End: Complemental strand, 39063748 - 39063591
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    ||||||| |||||||||||||| |||||||||||||| |  ||||||||||| | |||||||| ||   ||||||||||  || ||||||||||| ||||    
T  39063748 ttggtccaatttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatattgctcatttaatacttctctttttaatattagt 39063649  T
Q  419 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |||| ||||||||  |||||||  |||||||||| ||||||| |||||| ||||||||    
T  39063648 gtgtgtatttaatgtttcacaattttttatgaggttatatttgtaaaaatattcaaaa 39063591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 40442711 - 40442869
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||| ||||||||||||||||| ||||||||||||||| |  | ||||||||| | | |||||| || |||| ||||| ||||||||||||||||| |||    
T  40442711 tttgatcctatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttatctttttaatattag 40442810  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |  ||  ||||||| ||||||||  |||||| ||||||||| |||||||| ||||||||    
T  40442811 taggtgcatttaatgcttcacaactttttataagggtatatctataaaaatattcaaaa 40442869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 40503868 - 40504026
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||| ||||||||||||| ||||||||||||||| |  | ||||||||| | | |||||| || |||| ||||| ||||| ||||||||||| |||    
T  40503868 tttggtcccatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttgtctttttaatattag 40503967  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |  ||  ||||||| ||||||||  |||||||||||||||| | |||||| ||||||||    
T  40503968 taggtgcatttaatgcttcacaactttttatgagggtatatctgtaaaaatattcaaaa 40504026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 322 - 476
Target Start/End: Original strand, 38496470 - 38496624
Alignment:
Q  322 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg 421  Q
    |||||||||||||||||| |||| || ||||||| || | ||||||||| | |||| |||||| |||| |||||| |||| | ||||||||| ||||  |    
T  38496470 gtcctatttataagaaaatgtcagaatttttaaggtatagttattgtttaaaagacctttctaccccttatttaacgtttgtatttttaatattagtagg 38496569  T
Q  422 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    | ||||||||  ||| || | |||||| ||||||||||| |||||| ||||||||    
T  38496570 tgtatttaatgtttcgcacatttttatcagggtatatttgtaaaaatattcaaaa 38496624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 391 - 476
Target Start/End: Complemental strand, 44173721 - 44173636
Alignment:
Q  391 atttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    ||||||||||||||||||||||| |||||  |||| ||||||||| ||||||||||  |||||||||||| |||||||||| ||||    
T  44173721 atttaatgtttatctttttaatattagtgaatatagttaatactttacaaaattttccgagggtatatttctaaaaacatttaaaa 44173636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 506
Target Start/End: Complemental strand, 2287654 - 2287486
Alignment:
Q  336 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatactt 435  Q
    ||||||||||||||||||| ||| |||||||  || | |||||||| ||||| || |||||| ||| | ||||||||| ||||  |||||||||||| ||    
T  2287654 aaaaagtcacaacttttaaaatatatttatttgttaaaagactttt-taaccttcgtttaatatttttttttttaatattagta-gtatatttaatattt 2287557  T
Q  436 cacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggttt 506  Q
     ||||| ||  ||||  ||||| ||||||||||||||||||  ||||||| | | || |||||||||||||    
T  2287556 tacaaatttcgatgaaagtataattataaaaacattcaaaatgttgcaactattaattattgtcttggttt 2287486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 3268791 - 3268949
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||| | |||||||||||  |||||||||||||| |  | ||||||  | | ||||||||||| |||| ||||||||||| | ||||||||| ||     
T  3268791 tttggtccaaattataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaa 3268890  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |  || |||||||  ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  3268891 taggtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaa 3268949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 3269350 - 3269508
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||| | |||||||||||  |||||||||||||| |  | ||||||  | | ||||||||||| |||| ||||||||||| | ||||||||| ||     
T  3269350 tttggtccaaattataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaa 3269449  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |  || |||||||  ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  3269450 taggtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaa 3269508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 3269909 - 3270067
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||| | |||||||||||  |||||||||||||| |  | ||||||  | | ||||||||||| |||| ||||||||||| | ||||||||| ||     
T  3269909 tttggtccaaattataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaa 3270008  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |  || |||||||  ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  3270009 taggtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaa 3270067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 336 - 419
Target Start/End: Original strand, 34262721 - 34262803
Alignment:
Q  336 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 419  Q
    ||||||| |||| ||||||| | |||||||||||| | |||||||||||||||||| ||||||||| ||||||||||| |||||    
T  34262721 aaaaagtaacaa-ttttaaggttcatttattgtttaaaagacttttctaaccctcaattaatgtttgtctttttaatattagtg 34262803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 424 - 507
Target Start/End: Original strand, 34309311 - 34309394
Alignment:
Q  424 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||| |||  ||| || ||||||||| ||||    
T  34309311 tatttaatacttcacaaatttttatgagggtatatttgtaaaagcattcaaaaaattacaatcactaatgattgtcttgatttt 34309394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 336 - 506
Target Start/End: Complemental strand, 2315677 - 2315509
Alignment:
Q  336 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatactt 435  Q
    ||||||||||||||| ||| ||| |||||||  || | |||||||| ||||| || |||||| ||| ||||||||||| || |  |||||||||||| ||    
T  2315677 aaaaagtcacaacttataaaatatatttattagttaaaagactttt-taaccttcgtttaatatttctctttttaatattaata-gtatatttaatattt 2315580  T
Q  436 cacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggttt 506  Q
     ||||| ||  ||||  ||||| ||||||||||||||||||  ||||||| | | || |||||||||||||    
T  2315579 tacaaatttcgatgaaagtataattataaaaacattcaaaatgttgcaactattaattattgtcttggttt 2315509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 460
Target Start/End: Original strand, 16781256 - 16781396
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    |||||| ||||||||||||||||||||||| |||||| || | ||| ||||| | |||||||||||  ||| | ||||||||| ||||| ||||| ||||    
T  16781256 ttggtcatatttataagaaaaagtcacaac-tttaaggtataattaatgtttaaaagacttttctacgccttagttaatgtttgtctttgtaatattagt 16781354  T
Q  419 gtgtatatttaatacttcacaaaattttatgagggtatattt 460  Q
      || ||||||||  ||||| |  ||| ||||||||||||||    
T  16781355 aggtgtatttaatgtttcaccatttttaatgagggtatattt 16781396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 326 - 476
Target Start/End: Complemental strand, 4015934 - 4015785
Alignment:
Q  326 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 425  Q
    ||||||||||||||||||||||| | ||||||| | ||| ||||| | ||||||||||| |||| | ||||||||| ||||| ||||| ||||  ||  |    
T  4015934 tatttataagaaaaagtcacaac-tctaagatatagttaatgtttaaaagacttttctaccccttagttaatgtttgtctttgtaatattagtaggtgca 4015836  T
Q  426 tttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    ||||||  |||| ||  ||| | ||||||||||||||| ||  ||||||||    
T  4015835 tttaatgtttcataatttttaacgagggtatatttatataattattcaaaa 4015785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 319 - 476
Target Start/End: Original strand, 40664228 - 40664386
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatc-tttttaataatag 417  Q
    ||||||| ||| |||||||||  |||||||| ||||  |  ||||||| ||| | |||||||| || ||||||||||||| || || ||||||| | | |    
T  40664228 ttggtccaattgataagaaaatttcacaactcttaaagtgtatttattatttaaaagacttttatatccctcatttaatgcttctcttttttaacattgg 40664327  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    ||||| ||||||||  |||||||  ||||| |||||||||||| ||| || ||||||||    
T  40664328 tgtgtgtatttaatgtttcacaattttttacgagggtatatttgtaagaatattcaaaa 40664386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 507
Target Start/End: Complemental strand, 45724004 - 45723883
Alignment:
Q  386 ccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaac 485  Q
    |||||||||||| ||  |||||| |||| ||||  ||||||||||||||| | ||| |||||||| | ||||||| ||| ||||||||||| |||  | |    
T  45724004 ccctcatttaatattggtcttttcaatattagtaggtatatttaatactttataaatttttatgaagatatatttgtaacaacattcaaaaaattagagc 45723905  T
Q  486 aacttatcattgtcttggtttt 507  Q
    |||| || ||||| ||||||||    
T  45723904 aactaatgattgttttggtttt 45723883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 416
Target Start/End: Complemental strand, 3711992 - 3711895
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataata 416  Q
    |||||| ||||||||||||||| |||||||||||||||  | | ||||||||| | |||||||| || | || ||||||||| ||||||| ||| ||||    
T  3711992 tttggttctatttataagaaaatgtcacaacttttaag-gatagttattgtttaaaagacttttttatcgcttatttaatgtatatctttgtaaaaata 3711895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 476
Target Start/End: Original strand, 21794914 - 21794988
Alignment:
Q  403 tctttttaataatagtgtgtatatttaatacttcacaaaatttt-atgagggtatatttataaaaacattcaaaa 476  Q
    ||||||||||| |||||||| ||||||||  |||||||  |||| |||||||||||||| |||||| ||||||||    
T  21794914 tctttttaatattagtgtgtgtatttaatgtttcacaatttttttatgagggtatatttgtaaaaatattcaaaa 21794988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 21794849 - 21794886
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaag 355  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  21794849 tttggtccaatttataagaaaaattcacaacttttaag 21794886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 370
Target Start/End: Original strand, 35310800 - 35310852
Alignment:
Q  319 ttggtcctatttataagaaaaagtc-acaacttttaagatacatttattgttt 370  Q
    ||||| |||||||||||||||| || || |||||||||||| |||||||||||    
T  35310800 ttggttctatttataagaaaaaatccactacttttaagatatatttattgttt 35310852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 318 - 507
Target Start/End: Complemental strand, 38209674 - 38209485
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||  |||||| |||| |||    
T  38209674 tttggtcatatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaagacttctctaaccctcatttaatgttggtcttttcaatattag 38209575  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    || ||||||| ||||||||||||| |||||  |||||||||||||||||| ||| |||| ||| |||||| | || ||| ||||||||||    
T  38209574 tgggtatattaaatacttcacaaatttttaaaagggtatatttataaaaatatttaaaaaatttcaacaagtaatgattatcttggtttt 38209485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 318 - 507
Target Start/End: Complemental strand, 36408339 - 36408151
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    ||||||| ||| |||||||||||||||||||||| ||| |||||||||||||| ||| |||||| |||||||| |||||||||| ||||||||||| |||    
T  36408339 tttggtcttatatataagaaaaagtcacaacttt-aaggtacatttattgtttaacaaacttttttaaccctcgtttaatgtttgtctttttaatattag 36408241  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    ||  |||| ||||||||| ||||| |||||||||||||||||| ||||||||||||||| |||  ||| ||| || |||||||| |||||    
T  36408240 tggatataattaatacttaacaaatttttatgagggtatatttgtaaaaacattcaaaaaattataactactaataattgtcttagtttt 36408151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 318 - 467
Target Start/End: Original strand, 36054809 - 36054958
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||||||||||||||||| ||||||||||||||| || ||||||||||| | |||||||| || |||| | ||||||||| ||||||||||| |||    
T  36054809 tttggtcctatttataagaaaatgtcacaacttttaaggtatatttattgtttaaaagacttttataccccttaattaatgtttgtctttttaatattag 36054908  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    ||  | ||||||||||||| |||  ||| || ||||||||||||||||||    
T  36054909 tggatgtatttaatacttcccaatttttaataagggtatatttataaaaa 36054958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 378 - 507
Target Start/End: Original strand, 5923871 - 5924004
Alignment:
Q  378 ttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgaggg----tatatttataaaaacattca 473  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||| |||||||||||    ||||||| |||||||||| |    
T  5923871 ttttctaaccctcatttaatgtttgtctttttaatattagtgtgtataattaatactttacaaatttttatgagggcatatatatttttaaaaacattta 5923970  T
Q  474 aaacattgcaacaacttatcattgtcttggtttt 507  Q
    ||| ||| | || ||| || ||| ||||||||||    
T  5923971 aaaaattactaccactaatgattatcttggtttt 5924004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 8251229 - 8251387
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    ||||||||||||||||||||||  |||||||||||||| |  | |||||| || | |||| ||| |  || | |||||||| || ||||||||||| |||    
T  8251229 tttggtcctatttataagaaaatatcacaacttttaaggtgtaattattgcttaaaagacctttttccccattatttaatggttgtctttttaatattag 8251328  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    || || |||||||| ||||||||  |||||||||||||||||| |||||| ||||||||    
T  8251329 tgagtttatttaatgcttcacaattttttatgagggtatatttgtaaaaatattcaaaa 8251387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 319 - 476
Target Start/End: Original strand, 31658847 - 31659003
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    ||||| |||||||||||||||  ||||||||||||||||  | ||||||||| | |||||||| ||||| | ||||||||||| ||||||||||| ||||    
T  31658847 ttggttctatttataagaaaatatcacaacttttaagatgtagttattgtttaaaagacttttttaacctttatttaatgtttgtctttttaatactagt 31658946  T
Q  419 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |  | |||||||| || ||  || |||||||||| ||||||| |||||| ||||||||    
T  31658947 ggatgtatttaatgctgca-taatttttatgaggatatatttgtaaaaatattcaaaa 31659003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 319 - 476
Target Start/End: Original strand, 2207766 - 2207921
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    ||||||||||||||| |||||  |||||| ||||||||| || ||||||  | | ||| ||||||| |||| ||||||||||| | ||||||||| || |    
T  2207766 ttggtcctatttata-gaaaatatcacaatttttaagatgcagttattgcgttaaagaattttctaccccttatttaatgtttgtatttttaatattaat 2207864  T
Q  419 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    | || |||||||| |||||| || |||||||||||||||||| |||||| ||||||||    
T  2207865 gggtgtatttaatgcttcac-aatttttatgagggtatatttgtaaaaatattcaaaa 2207921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 374 - 476
Target Start/End: Original strand, 2152369 - 2152472
Alignment:
Q  374 agacttttctaaccctcatttaatgtttatcttttt-aataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattc 472  Q
    ||||||||||| |||| ||||||||||||||||||| |||| ||| | || |||||||| ||||||||  |||||| |||||||||||||||||| ||||    
T  2152369 agacttttctaccccttatttaatgtttatcttttttaatattagcgagtctatttaatgcttcacaattttttataagggtatatttataaaaatattc 2152468  T
Q  473 aaaa 476  Q
    ||||    
T  2152469 aaaa 2152472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 319 - 476
Target Start/End: Complemental strand, 16890425 - 16890265
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttt---aataat 415  Q
    ||||||||||||||| |||||  |||||||||||||| || | ||| ||||| | ||||||||||| || | ||||| ||||| | |||||   |||| |    
T  16890425 ttggtcctatttatatgaaaatatcacaacttttaaggtatagttagtgtttcaaagacttttctaccctttatttattgtttgtttttttataaatatt 16890326  T
Q  416 agtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |||| || ||||||||  |||||||  |||||||||||||||||| |||||| ||||||||    
T  16890325 agtgagtttatttaatgtttcacaattttttatgagggtatatttgtaaaaatattcaaaa 16890265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 321 - 476
Target Start/End: Original strand, 1445349 - 1445504
Alignment:
Q  321 ggtcctatttataagaaaaagtcacaacttttaagat-acatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 419  Q
    ||||||||||||||||||| ||||||||||||||| |   | |||||| || |  |||||||||| |||| ||||||||||| ||||||  ||| |||||    
T  1445349 ggtcctatttataagaaaatgtcacaacttttaaggtgtaagttattgcttaaatgacttttctatccct-atttaatgtttctcttttagatattagtg 1445447  T
Q  420 tgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
     || ||||||||  |||||||  ||| |||| ||||||||| |||||  ||||||||    
T  1445448 agtgtatttaatgtttcacaatttttaatgaaggtatatttgtaaaagtattcaaaa 1445504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 30653701 - 30653628
Alignment:
Q  403 tctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    ||||||||||| |||| ||| ||||||||  |||||||| |||||||||||||||||| |||||  ||||||||    
T  30653701 tctttttaatactagtttgtgtatttaatgtttcacaaatttttatgagggtatatttgtaaaattattcaaaa 30653628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 372
Target Start/End: Complemental strand, 21504936 - 21504882
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttga 372  Q
    |||||||| ||||||||||||| || ||||||||||||||  |||||||||||||    
T  21504936 tttggtccaatttataagaaaatgttacaacttttaagatgtatttattgtttga 21504882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 413
Target Start/End: Complemental strand, 30112578 - 30112485
Alignment:
Q  320 tggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 413  Q
    |||||||||||||||||||| ||||||| ||||||| |  | |||||| || | ||| |||| || ||||| |||||||| | |||||||||||    
T  30112578 tggtcctatttataagaaaatgtcacaaattttaaggtgtagttattgcttaaaagatttttttatccctcgtttaatgtatgtctttttaata 30112485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 4641095 - 4641131
Alignment:
Q  377 cttttctaaccctcatttaatgtttatctttttaata 413  Q
    ||||||||||||||||||||||||| |||||||||||    
T  4641095 cttttctaaccctcatttaatgtttgtctttttaata 4641131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 354
Target Start/End: Original strand, 35431579 - 35431614
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaa 354  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35431579 ttggtcctatttataagaaaatgtcacaacttttaa 35431614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 326 - 507
Target Start/End: Complemental strand, 25376991 - 25376810
Alignment:
Q  326 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 425  Q
    |||||| ||||||||||||||  ||||||| || | ||||||||| | ||||||||||||||||||||||||||| ||||||| |||| | ||| |||||    
T  25376991 tatttacaagaaaaagtcacagattttaaggtataattattgtttaaaagacttttctaaccctcatttaatgttgatcttttcaatatttgtgagtata 25376892  T
Q  426 tttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||||||| ||| |||||||| || ||||||||||||||    
T  25376891 tttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggtttt 25376810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 318 - 467
Target Start/End: Original strand, 18838745 - 18838893
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||| |||||||| |||||| |||| |||||||||| || | ||||||||| | ||||||||||| ||||||||||||| |||||||||||||| |||    
T  18838745 tttggttctatttatgagaaaatgtcataacttttaaggtataattattgtttaaaagacttttcta-ccctcatttaatgattatctttttaatattag 18838843  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    || || ||||||||  |||||||  |||||||||||||||||| ||||||    
T  18838844 tgggtgtatttaatgtttcacaattttttatgagggtatatttgtaaaaa 18838893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 319 - 419
Target Start/End: Original strand, 54863918 - 54864018
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||||| ||||||||||||| ||||||| |||| ||||    
T  54863918 ttggtcctatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaaggcttttctaactctcatttaatgttgatcttttcaatattagt 54864017  T
Q  419 g 419  Q
    |    
T  54864018 g 54864018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 424
Target Start/End: Original strand, 21128097 - 21128195
Alignment:
Q  326 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 424  Q
    |||||||||||||| |||| |||||||||  || ||||||| ||| | ||||||||| ||||||||||| |||||||||||||| ||| ||||| ||||    
T  21128097 tatttataagaaaatgtcataacttttaatgtatatttattttttaaaagacttttccaaccctcattttatgtttatcttttttatattagtgagtat 21128195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 507
Target Start/End: Original strand, 25382400 - 25382531
Alignment:
Q  375 gacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaa 474  Q
    ||||||| || |||| ||||||||||  |||||||| || ||||| |||| |||||||||||||||| ||| || ||||||||||| | |||||||||||    
T  25382400 gacttttgtagcccttatttaatgttagtctttttagtattagtgagtatttttaatacttcacaaattttcataagggtatatttgt-aaaacattcaa 25382498  T
Q  475 aacattgcaacaacttatcattgtcttggtttt 507  Q
    || ||||| | || | || ||||||||| ||||    
T  25382499 aaaattgccataattaattattgtcttgatttt 25382531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 476
Target Start/End: Complemental strand, 31707448 - 31707349
Alignment:
Q  374 agacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattca 473  Q
    ||||||||||| |||| ||||||||||| ||||||||||| ||||| || |||   || ||||| ||| |||||||||||||||||| |||||| |||||    
T  31707448 agacttttctaccccttatttaatgtttgtctttttaatattagtgggtgtat---atgcttcataaatttttatgagggtatatttgtaaaaatattca 31707352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 467
Target Start/End: Original strand, 16572251 - 16572391
Alignment:
Q  324 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 423  Q
    |||||||||||||||| ||||||||||||||| |  | |||||| || ||||| |||| || |||||||||||||  | | ||||||||| ||||   |     
T  16572251 cctatttataagaaaatgtcacaacttttaaggtgtagttattgcttaacagaattttttatccctcatttaatgactgtatttttaatattagt---tg 16572347  T
Q  424 tatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    ||||||||| ||||||| ||| ||| | ||||||||| ||||||    
T  16572348 tatttaatatttcacaatattctataatggtatatttttaaaaa 16572391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 413
Target Start/End: Complemental strand, 33721768 - 33721675
Alignment:
Q  320 tggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 413  Q
    |||||||||||||||||||| ||||||| ||||||  |  | ||||||||| | ||||||||||| | ||| ||||||||||||| ||||||||    
T  33721768 tggtcctatttataagaaaatgtcacaatttttaatgtgtagttattgtttaaaagacttttctacctctcgtttaatgtttatccttttaata 33721675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 456
Target Start/End: Original strand, 34319546 - 34319682
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    ||||||||||||||||||||| ||||||| ||||||  | |  ||||||||| | |  ||||||| ||||| ||||||||||| ||||||||||| |  |    
T  34319546 ttggtcctatttataagaaaatgtcacaatttttaaagtgcggttattgtttaaaaagcttttct-acccttatttaatgtttttctttttaatatttat 34319644  T
Q  419 gtgtatatttaatacttcacaaaattttatgagggtat 456  Q
    |  ||||||||||  || ||||  ||||||||||||||    
T  34319645 ggatatatttaatgttttacaattttttatgagggtat 34319682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 44884507 - 44884411
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaactttt--aagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 413  Q
    ||||||||||| |||||||||| ||||||||||||  ||| |  | ||||||||| | |||||||| || ||||||||||||||||  ||||||||||    
T  44884507 tttggtcctatatataagaaaatgtcacaacttttttaaggtgtagttattgtttaaaagactttt-tatccctcatttaatgtttgcctttttaata 44884411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 475
Target Start/End: Complemental strand, 42312564 - 42312399
Alignment:
Q  318 tttggtcctatttataagaaaa-agtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttt------- 409  Q
    ||||||| ||||||||| |||| | |||||||||||||| || | |||||| || | ||||||||||| || |  ||| |||||| |||||||           
T  42312564 tttggtcttatttataaaaaaataatcacaacttttaaggtatagttattgcttaaaagacttttctatcctttgttttatgtttgtctttttttttttt 42312465  T
Q  410 aataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaa 475  Q
    |||| ||| |  ||||||| || ||||||||  |||||||||||||||||| |||||| |||||||    
T  42312464 aatattagaggatatattttatgcttcacaattttttatgagggtatatttgtaaaaatattcaaa 42312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 400
Target Start/End: Complemental strand, 47231718 - 47231644
Alignment:
Q  326 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtt 400  Q
    |||||||||||||| ||||  |||||||||||| ||||||||||| | ||| |||| || | || ||||||||||    
T  47231718 tatttataagaaaatgtcaatacttttaagatatatttattgtttaaaagatttttttacctcttatttaatgtt 47231644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 318 - 507
Target Start/End: Complemental strand, 30041460 - 30041272
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||| || ||| ||||||||| |||||||| ||| || ||||||||||| | |||||||||||||||| | ||||||||| ||||||||||| |||    
T  30041460 tttggtccaatatattagaaaaagtgacaacttt-aaggtatatttattgtttaaaagacttttctaacccttaattaatgtttgtctttttaatattag 30041362  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    ||  ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| |||| ||| || ||||||||||||||    
T  30041361 tggttatatttaatacttcacaaatctttatgagggtatatttataaaaacattcaaaaaattacaaccactaatgattgtcttggtttt 30041272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 378 - 506
Target Start/End: Original strand, 35104722 - 35104850
Alignment:
Q  378 ttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaac 477  Q
    |||||||||| ||||||||||||  |||||| |||| ||||||||||||||||||| ||| ||||||||| |||||||||||| || ||||||||||||     
T  35104722 ttttctaaccttcatttaatgttggtcttttcaatattagtgtgtatatttaatacctcaaaaaattttaagagggtatatttgtacaaacattcaaaaa 35104821  T
Q  478 attgcaacaacttatcattgtcttggttt 506  Q
    |||||||||||| || |||||||||||||    
T  35104822 attgcaacaactaataattgtcttggttt 35104850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 330 - 413
Target Start/End: Original strand, 49983561 - 49983644
Alignment:
Q  330 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 413  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||    
T  49983561 tataagaaaaagtcacaacttttaagatacatttattgtttaaaagacttttctaaccctcatttaatgtttgtctttttaata 49983644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 41559980 - 41560132
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||| || ||||||||||| ||| || |||||||||||||||||  ||| | |||||||| |||| |||||||||||||| ||||| ||||| |||    
T  41559980 tttggtccaatatataagaaaaaatcataatttttaagatacatttatgatttaaaagacttttttaactctcatttaatgtttgtctttctaatattag 41560079  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    || |      | |||||||||||| |||||||| |||||||||||||||||||||||||    
T  41560080 tgag------ttatacttcacaaatttttatgaaggtatatttataaaaacattcaaaa 41560132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 386 - 476
Target Start/End: Complemental strand, 43105234 - 43105144
Alignment:
Q  386 ccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    ||||||||||||||| ||||||| |||| ||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||||||||    
T  43105234 ccctcatttaatgttgatcttttcaatattagtgggtatatttgatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaa 43105144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 45261357 - 45261512
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||||||||||||||||| ||||||||||||||| |  | |||||| || |  |||||||||| |||| ||||||||||| |||||| |||| |||    
T  45261357 tttggtcctatttataagaaaatgtcacaacttttaagctgtagttattgcttaaatgacttttctatccct-atttaatgtttctcttttaaatattag 45261455  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    || || ||||||||  |||||  |||||| ||||||||||||| ||||||  |||||||    
T  45261456 tgggtgtatttaatgtttcac--aattttttgagggtatatttgtaaaaatgttcaaaa 45261512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 318 - 476
Target Start/End: Complemental strand, 40345085 - 40344929
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||| |||||| |||||||||| ||||||||||||||| |  | | |||| || | |||||||| || |||||||||||| ||| ||||||||||| |||    
T  40345085 tttgttcctatctataagaaaatgtcacaacttttaaggtgtagtcattgcttaagagacttttatacccctcatttaatatttgtctttttaatattag 40344986  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    || |  ||||||||  |||||||  |||||| ||||||||||| |||||| ||||||||    
T  40344985 tgag--tatttaatggttcacaattttttataagggtatatttgtaaaaatattcaaaa 40344929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 326 - 467
Target Start/End: Original strand, 22923629 - 22923773
Alignment:
Q  326 tatttataagaaaaagtcacaacttttaagatac---atttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 422  Q
    ||||||||||||||||| ||||||| ||||||||   |||||||| || |  ||| ||||||| | | |||||||  | |||||||||||| ||||  ||    
T  22923629 tatttataagaaaaagttacaacttgtaagatactatatttattggttaaaggacatttctaatcataatttaattgtgatctttttaatattagtaggt 22923728  T
Q  423 atatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    ||||||||||| ||||||| |||||||| ||||||||| ||||||    
T  22923729 atatttaatacatcacaaatttttatgaaggtatatttgtaaaaa 22923773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 403 - 507
Target Start/End: Original strand, 49983786 - 49983892
Alignment:
Q  403 tctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatattt---ataaaaacattcaaaacattgcaacaacttatcattgtc 499  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||   | |||||||||||||| ||| |||  ||| || ||||||    
T  49983786 tctttttaatattagtgggtatatttaatacttcacaaatttttatgagggtatatttgtaaaaaaaacattcaaaa-attacaatcactaatgattgtc 49983884  T
Q  500 ttggtttt 507  Q
    ||||||||    
T  49983885 ttggtttt 49983892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 358 - 489
Target Start/End: Original strand, 30577821 - 30577952
Alignment:
Q  358 acatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtata 457  Q
    ||||||||| ||| | |||| |||||| |||||||||||||||  |||||| || | ||||   |||||||||||||||||  | |||||||| ||||||    
T  30577821 acatttattatttaaaagacgtttctatccctcatttaatgttggtcttttcaacattagtagatatatttaatacttcactcatttttatgatggtata 30577920  T
Q  458 tttataaaaacattcaaaacattgcaacaact 489  Q
    ||| |||||||||| |||| ||| ||||||||    
T  30577921 tttgtaaaaacatttaaaaaattacaacaact 30577952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 43106004 - 43105935
Alignment:
Q  326 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaa 396  Q
    |||||||||||||||||||||||||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  43106004 tatttataagaaaaagtcacaacttttaaggt-tatttattgtttaaaagacttttctaaccctcatttaa 43105935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 320 - 476
Target Start/End: Complemental strand, 17003729 - 17003574
Alignment:
Q  320 tggtcctatttataagaaaaa-gtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    ||||||||||||||| ||||| ||||||||||||||| |  | |||||| || |  ||||||| || |||| ||||||||||| |||||| |||| ||||    
T  17003729 tggtcctatttataaaaaaaatgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttctcttttaaatattagt 17003631  T
Q  419 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    | || | ||||||  |||||||  |||||||||||||||||| |||||| ||||||||    
T  17003630 gggtgtgtttaatgtttcacaat-ttttatgagggtatatttgtaaaaatattcaaaa 17003574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 319 - 428
Target Start/End: Complemental strand, 32211943 - 32211834
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    |||||| ||||||||||||||  |||||||||||||| |  | ||||||||| | ||||||||||| || | ||||||||||| ||||||||||| ||||    
T  32211943 ttggtcttatttataagaaaatttcacaacttttaaggtgtagttattgtttaaaagacttttctacccgttatttaatgtttgtctttttaatattagt 32211844  T
Q  419 gtgtatattt 428  Q
    | || |||||    
T  32211843 gggtgtattt 32211834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 489
Target Start/End: Original strand, 24650120 - 24650285
Alignment:
Q  322 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg 421  Q
    ||||||||||||| ||||  | |||||||||||| || ||||||||||  | | |||||| ||||| || |||||| ||| ||||||||||| ||||| |    
T  24650120 gtcctatttataaaaaaa--ttacaacttttaaggtatatttattgttaaaaaaacttttttaaccttcttttaatttttgtctttttaatattagtgag 24650217  T
Q  422 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaact 489  Q
     |||||||||| |||||||  |||||| |  |||||||| |||||  ||  |||| ||||||||||||    
T  24650218 catatttaatatttcacaattttttataaaagtatatttgtaaaagtataaaaaaaattgcaacaact 24650285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 319 - 476
Target Start/End: Complemental strand, 8825511 - 8825356
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatg--tttatctttttaataata 416  Q
    ||||||||||||||||||||| ||||||| ||||||| |  | |||||| || | ||||||||||| || ||||||||||  ||||   |||||||| ||    
T  8825511 ttggtcctatttataagaaaatgtcacaa-ttttaaggtgtagttattgcttaaaagacttttctatccttcatttaatgacttta---ttttaatatta 8825416  T
Q  417 gtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
     || || |||||||| || |||||  |||||| |||||||||||||||||| ||| ||||    
T  8825415 atgagtgtatttaatgctacacaattttttataagggtatatttataaaaatatttaaaa 8825356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 318 - 455
Target Start/End: Original strand, 38854607 - 38854744
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgttt-atctttttaataata 416  Q
    |||||| |||||||||||||||| |||||||||||||  || ||||||| || || |||||||||| |||||| |||||| |||  | |||||||||  |    
T  38854607 tttggttctatttataagaaaaattcacaacttttaaagtatatttatttttaga-agacttttctcaccctcgtttaatttttgttttttttaatatca 38854705  T
Q  417 gtgtgtatatttaatacttcacaaaattttatgagggta 455  Q
     || ||| ||| ||||||||||||| |||||||| ||||    
T  38854706 atgagtaaattcaatacttcacaaatttttatgaaggta 38854744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 440
Target Start/End: Complemental strand, 25295198 - 25295085
Alignment:
Q  327 atttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatat 426  Q
    ||||||||||||| || |||||||||||| |  | ||||||||| | |||||||| || ||||||||||||| || ||||||||||| ||||| || |||    
T  25295198 atttataagaaaatgttacaacttttaaggtgtaattattgtttaaaagacttttttatccctcatttaatgcttctctttttaatattagtgggtttat 25295099  T
Q  427 ttaatacttcacaa 440  Q
    | |||  |||||||    
T  25295098 taaatgtttcacaa 25295085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 467
Target Start/End: Complemental strand, 46918617 - 46918469
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||||||||||||||||| ||||||| |||||||  | | |||||| || | |||||||| || || ||||||||||| | ||||||||||| ||     
T  46918617 tttggtcctatttataagaaaatgtcacaatttttaag-gatagttattgcttaaaagacttttttatccttcatttaatgtctgtctttttaatattaa 46918519  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    ||  | ||||||||  |||| || ||| ||| ||||||||||| ||||||    
T  46918518 tgaatgtatttaatgtttcaaaatattctataagggtatatttgtaaaaa 46918469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 319 - 476
Target Start/End: Original strand, 35455302 - 35455455
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    |||||| |||||||||||||| ||||||||||||||| |  | |||||| || |  |||||||||| |||| |||||||||||||  ||| |||| ||||    
T  35455302 ttggtcttatttataagaaaatgtcacaacttttaaggtgtaattattgcttaaatgacttttctatccct-atttaatgtttat-atttaaatattagt 35455399  T
Q  419 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    | || ||||||||  |||||||  ||||||||  |||||||| || ||| ||||||||    
T  35455400 gagtgtatttaatgtttcacaattttttatga--gtatatttgtagaaatattcaaaa 35455455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 460
Target Start/End: Original strand, 49787770 - 49787879
Alignment:
Q  351 ttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatga 450  Q
    |||||||| ||||||||||| | | |||||| |||||||| |||||||||| || |||||| | || || |||||||||||| || ||||| ||  ||||    
T  49787770 ttaagatatatttattgtttaaaatacttttataaccctcgtttaatgtttgtccttttaaaattaatgagtatatttaatattttacaaatttcaatga 49787869  T
Q  451 gggtatattt 460  Q
    |||| |||||    
T  49787870 gggtgtattt 49787879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 410
Target Start/End: Complemental strand, 43320286 - 43320194
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttta 410  Q
    ||||| |||||||||||||||| ||||||||||||||| |    ||||||||| | ||||||||||| |||  ||| ||||||| ||||||||    
T  43320286 tttggacctatttataagaaaatgtcacaacttttaaggtgtggttattgtttaaaagacttttctagcccctattcaatgtttgtcttttta 43320194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 42279287 - 42279233
Alignment:
Q  422 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    ||||||||||| |||| ||| |||||||||||||||||| |||||| ||| ||||    
T  42279287 tatatttaatatttcataaatttttatgagggtatatttgtaaaaatattaaaaa 42279233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 2567789 - 2567821
Alignment:
Q  170 ttatacatcgtaaattgtgttaatttatttttt 202  Q
    |||| ||||||||||||||||||||||||||||    
T  2567789 ttatgcatcgtaaattgtgttaatttatttttt 2567821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 336 - 507
Target Start/End: Original strand, 9425503 - 9425675
Alignment:
Q  336 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatactt 435  Q
    ||||| ||||||||||| || || ||||||||||| | |||||||| ||| ||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  9425503 aaaaaatcacaacttttgaggtatatttattgtttaaaagacttttttaatcctcatttaatgtttatctttttcataatagtgaatatatttaatactt 9425602  T
Q  436 cacaaaattttatgagggtatatttataaaaacattc-aaaacattgcaacaacttatcattgtcttggtttt 507  Q
    |||| ||||||||||| |||||||| ||||||||||| |||| |||||||||||| || ||| ||||||||||    
T  9425603 cacagaattttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactaatgattttcttggtttt 9425675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 333 - 476
Target Start/End: Original strand, 6657887 - 6658029
Alignment:
Q  333 aagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaata 432  Q
    ||||||||||||||||||| ||| |||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  6657887 aagaaaaagtcacaacttt-aaggtacatttattgtttaaatgacttttctaaccctcatttaatgtttgtctttttaatattagtgggtatatttaata 6657985  T
Q  433 cttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    ||||||||| |||||||||||||||||| |||| ||||| ||||    
T  6657986 cttcacaaatttttatgagggtatatttgtaaatacattaaaaa 6658029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 318 - 507
Target Start/End: Original strand, 19780224 - 19780413
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    ||||||||||| |||||||||||||  |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||| || | |||    
T  19780224 tttggtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattag 19780323  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 507  Q
    || ||||||||||||||||||||| || ||    ||||||||| |||||||||| |||| ||| ||| |||| || ||| ||||||||||    
T  19780324 tgggtatatttaatacttcacaaatttataatgcggtatatttgtaaaaacattaaaaaaattacaataactaatgattatcttggtttt 19780413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 476
Target Start/End: Original strand, 180334 - 180491
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    |||||||||||||||||||||  |||||| |||||||||  | |||||| || | |||||||| || |||| ||||||||||| ||||||||||| ||||    
T  180334 ttggtcctatttataagaaaatatcacaatttttaagatgtagttattgcttaaaagacttttataccccttatttaatgtttgtctttttaatattagt 180433  T
Q  419 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
       | |||||||  ||||| ||  |||||| ||||||||||| |||| | ||||||||    
T  180434 cgatgtatttaacgcttcaaaattttttataagggtatatttgtaaacatattcaaaa 180491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 476
Target Start/End: Complemental strand, 34837260 - 34837147
Alignment:
Q  363 tattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttat 462  Q
    |||||||| | |||||||| || |||| |||||||| || ||||||||||| || ||  | |||| ||| ||||||||  |||||||||||||||||| |    
T  34837260 tattgtttaaaagacttttttaccccttatttaatgcttgtctttttaatattaatggatgtattgaatgcttcacaattttttatgagggtatatttgt 34837161  T
Q  463 aaaaacattcaaaa 476  Q
    ||||| ||||||||    
T  34837160 aaaaatattcaaaa 34837147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 467
Target Start/End: Complemental strand, 606772 - 606623
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||||||||||||||||| ||||||||||||||| |  | |||| | || | | ||||||  | |||| ||||||||  | | ||||||||| |||    
T  606772 tttggtcctatttataagaaaatgtcacaacttttaaggtgtacttatagcttaaaatactttttaatcccttatttaatgactgtatttttaatattag 606673  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    ||  | ||||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  606672 tggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaa 606623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 1856752 - 1856839
Alignment:
Q  326 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 413  Q
    ||||||||| ||||  ||||||||||||||   || ||||||||| | ||||||||||| | |||||||||| ||| |||||||||||    
T  1856752 tatttataaaaaaatatcacaacttttaagtatcagttattgtttaaaagacttttctatctctcatttaatatttctctttttaata 1856839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 476
Target Start/End: Complemental strand, 12143771 - 12143716
Alignment:
Q  421 gtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    ||||||||||| ||||||||  |||||||||||| ||||| |||||| ||||||||    
T  12143771 gtatatttaatgcttcacaattttttatgagggtgtatttgtaaaaatattcaaaa 12143716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 30627822 - 30627854
Alignment:
Q  271 tactcactccggtctcatttataagaaaaattt 303  Q
    ||||||||||||||| |||||||||||||||||    
T  30627822 tactcactccggtcttatttataagaaaaattt 30627854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 318 - 504
Target Start/End: Complemental strand, 38987 - 38802
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||||||||||| | | | ||||||| |||| ||| |||| |  | || | |||| |||    
T  38987 tttggtcttatttataagaaaaagtcacaatttttaagatatatttattgtttaaaatatttttctagcccttattgaatg-tcgttttatcaatattag 38889  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggt 504  Q
    ||  ||| ||||||| ||| |||| ||||||||| |||||||| ||||||||||||||| ||||||| |||| || ||||| |||||    
T  38888 tggatatgtttaatagttcccaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaagaactaatgattgttttggt 38802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 333 - 476
Target Start/End: Original strand, 131735 - 131881
Alignment:
Q  333 aagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaat- 431  Q
    ||||||||||||||||||| ||| | |||||||||||  | |||||||||||||| ||| | || |||| ||||||||||| |||||  ||||||||||     
T  131735 aagaaaaagtcacaacttt-aaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaata 131833  T
Q  432 --acttcacaaaattttatgagggtatatttat-aaaaacattcaaaa 476  Q
      |||||||||| |||||||||||||||||| | ||||||||||||||    
T  131834 atacttcacaaatttttatgagggtatatttgtaaaaaacattcaaaa 131881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 318 - 467
Target Start/End: Original strand, 3015 - 3164
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||||||||||||||||| ||||||||||||||| |  | ||||||||| | ||||||||||| |||||||| |||  || ||||||||||| |||    
T  3015 tttggtcctatttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttctatccctcattcaataattctctttttaatattag 3114  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    ||  | ||||||||  ||||||| ||| ||| |||| || ||| ||||||    
T  3115 tggatgtatttaatgtttcacaacattctataagggcatgtttgtaaaaa 3164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 319 - 467
Target Start/End: Complemental strand, 651 - 503
Alignment:
Q  319 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 418  Q
    ||||||||| |||||||||||||||||||| |||||| |  | ||||||||| | |||||||| || ||||||||||||| || || |||||||| ||||    
T  651 ttggtcctaattataagaaaaagtcacaacatttaaggtgtagttattgtttaaaagacttttttatccctcatttaatgattgtcgttttaatattagt 552  T
Q  419 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    |  |  |||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  551 ggatccatttaatgtttcacaacattctataagggtatatttgtaaaaa 503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 51266 - 51424
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||| ||||||||||| ||| ||||||||||||||| |  |||||||| || | ||| |||| || ||||||||||||  || ||||||||||  |||    
T  51266 tttggttctatttataagtaaatgtcacaacttttaaggtgtatttattgcttaaaagatttttttatccctcatttaataattctctttttaattttag 51365  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |  || ||||||||  |||||||  ||||||||||||||| || |||||| ||||||||    
T  51366 ttggtgtatttaatgtttcacaactttttatgagggtataattgtaaaaatattcaaaa 51424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 380 - 476
Target Start/End: Complemental strand, 11691152 - 11691056
Alignment:
Q  380 ttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    ||||| |||||||||||||||| ||||||||||  ||||| || ||||||||| |||| || ||||||||||| | ||||| |||||| ||||||||    
T  11691152 ttctatccctcatttaatgtttctctttttaatcttagtgagtgtatttaatatttcataatattttatgaggatgtatttgtaaaaatattcaaaa 11691056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 467
Target Start/End: Original strand, 27193009 - 27193153
Alignment:
Q  323 tcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 422  Q
    ||||||||||||| ||| |||||||||||||||||| | ||||||||| | |||||||| || || ||||||||||  | |||||||||||  | || ||    
T  27193009 tcctatttataaggaaatgtcacaacttttaagatatagttattgtttaaaagacttttttatccttcatttaatgcatctctttttaatataactgagt 27193108  T
Q  423 atatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    || ||||||  |||| ||  |||||||| | ||||||| ||||||    
T  27193109 atttttaatgtttcataattttttatgatgatatatttgtaaaaa 27193153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 325 - 471
Target Start/End: Original strand, 17693562 - 17693705
Alignment:
Q  325 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttt-tctaaccctcatttaatgtttatctttttaataatagtgtgta 423  Q
    ||||||||||||||| ||||||| |||||||||  |||||||   | | ||||||| | ||  ||||||| |||||||||| |||||||| |||||  ||    
T  17693562 ctatttataagaaaatgtcacaatttttaagatgtatttattacataaaagactttctttagtcctcattcaatgtttatcattttaatactagtggata 17693661  T
Q  424 tatttaatacttcacaaaattttatgagggtatatttataaaaacatt 471  Q
    ||||    |||||| ||||||||| |||||||||||| ||||||||||    
T  17693662 tatt----acttcataaaattttacgagggtatatttgtaaaaacatt 17693705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 1963010 - 1962962
Alignment:
Q  322 gtcctatttataagaaaaagtcacaacttttaagatacatttattgttt 370  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  1963010 gtcctatttataagaaaaagtgacaacttttaaaatatatttattgttt 1962962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 431
Target Start/End: Complemental strand, 3257354 - 3257251
Alignment:
Q  328 tttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatt 427  Q
    ||||||||||||  ||||||||||||||    |  |||||||| | ||||||||||| | || ||||||||||| ||||||||||| |||||  ||||||    
T  3257354 tttataagaaaatatcacaacttttaaggcgtaactattgtttaaaagacttttctatctcttatttaatgtttgtctttttaatattagtggatatatt 3257255  T
Q  428 taat 431  Q
    ||||    
T  3257254 taat 3257251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 460
Target Start/End: Original strand, 6688782 - 6688924
Alignment:
Q  320 tggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttta--ataatag 417  Q
    ||||||||  ||||||||||  |||||||||||||| |  | ||||||||| | ||||||||||| |||| ||||||| | | | ||||||  ||| |||    
T  6688782 tggtcctaaatataagaaaatatcacaacttttaaggtgtagttattgtttaaaagacttttctatcccttatttaatatgtttgtttttaatatattag 6688881  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatattt 460  Q
    |  || |||||||| ||| ||||  ||||||||||||||||||    
T  6688882 taagtgtatttaatgctttacaattttttatgagggtatattt 6688924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 476
Target Start/End: Original strand, 18704992 - 18705150
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||||| | |||||||||||  ||| |||||||||| |  | |||||  || | |||||||| || || | ||||||||||| | ||||||||| ||     
T  18704992 tttggtccaaattataagaaaacatcataacttttaaggtgtagttattacttaaaagacttttttaccctttatttaatgtttttgtttttaatattaa 18705091  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 476  Q
    |  || |||||||| ||||||||  |||||| ||| ||||||| |||||| ||||||||    
T  18705092 taggtgtatttaatgcttcacaactttttataaggatatatttgtaaaaatattcaaaa 18705150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 467
Target Start/End: Complemental strand, 3629360 - 3629215
Alignment:
Q  322 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg 421  Q
    |||| ||||||||||||| ||||||||||||||| |  | |||||  || | |||||||| || |||| ||||||||  | | ||||||||| |||||      
T  3629360 gtccaatttataagaaaatgtcacaacttttaaggtgtagttattacttaaaagacttttgtatccctaatttaatgactgtatttttaatattagtgaa 3629261  T
Q  422 tatatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    | ||||||||  ||||||| ||| ||| ||| ||||||| ||||||    
T  3629260 tgtatttaatgtttcacaacattctataaggttatatttgtaaaaa 3629215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 477
Target Start/End: Original strand, 17686233 - 17686384
Alignment:
Q  326 tatttataagaaaaa-gtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 424  Q
    ||||||||||||||| |||| |||||||||| |  ||||| | | | | ||||||||  || |||| ||||||||| |||||||||||| |||||   |     
T  17686233 tatttataagaaaaaagtcataacttttaaggtgtatttactatataaaagactttttcaatcctcctttaatgtt-atctttttaatactagtggaaac 17686331  T
Q  425 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaac 477  Q
    ||||||||||||| |   |||||||| |||||| || |||||||||| |||||    
T  17686332 atttaatacttcatatgtttttatgaaggtatacttgtaaaaacatttaaaac 17686384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 467
Target Start/End: Original strand, 2225619 - 2225722
Alignment:
Q  364 attgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttata 463  Q
    ||||||| | ||||||||||| |  | ||||||||||| | ||||||||| |||||  | ||||||||  |||||||  |||||||| ||||||||| ||    
T  2225619 attgtttaaaagacttttctaccatttatttaatgtttttgtttttaatattagtggttgtatttaatgtttcacaactttttatgaaggtatatttgta 2225718  T
Q  464 aaaa 467  Q
    ||||    
T  2225719 aaaa 2225722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 440
Target Start/End: Complemental strand, 11983709 - 11983614
Alignment:
Q  345 caacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaa 440  Q
    ||||||||||| |  | ||||||||| | ||| |||| || |||||||||||||||| ||||||||||| |||||  | ||||||||  |||||||    
T  11983709 caacttttaaggtgtaattattgtttaaaagatttttttacccctcatttaatgtttctctttttaatattagtggatgtatttaatgtttcacaa 11983614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 353
Target Start/End: Original strand, 23010685 - 23010720
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaactttta 353  Q
    |||||||||||||||||||||||||||||| |||||    
T  23010685 tttggtcctatttataagaaaaagtcacaaatttta 23010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 467
Target Start/End: Original strand, 14917792 - 14917865
Alignment:
Q  391 atttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 467  Q
    |||||||||||| | ||||||||||   |||| |||||||| ||||||||  ||||| |||||||||||| ||||||    
T  14917792 atttaatgtttagccttttaataat---gtgtgtatttaattcttcacaattttttacgagggtatatttgtaaaaa 14917865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 474
Target Start/End: Original strand, 154333 - 154489
Alignment:
Q  318 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 417  Q
    |||||| |||||||||||||||  | |||||||||||| |  | ||||||||| | |||| ||| || |  | ||||||||||| ||||||||||| | |    
T  154333 tttggttctatttataagaaaatattacaacttttaaggtgtagttattgtttaaaagacctttttaccttttatttaatgtttgtctttttaatattgg 154432  T
Q  418 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaa 474  Q
    || || |||||||| |||||||   ||||||||||| || ||| |||||| ||||||    
T  154433 tgggtgtatttaatgcttcacagttttttatgagggcatgtttgtaaaaatattcaa 154489  T

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