View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_7 (Length: 506)
Name: NF4890_low_7
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Complemental strand, 35447481 - 35446999
Alignment:
| Q |
11 |
aagttggctgctccacctccaaatgaattctctgattagtctcagctttctcttcaacttttaccaacatttcctcatctggtagtataactcttacaaa |
110 |
Q |
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| T |
35447481 |
aagttggctgctccacctccaaatgaattctctgattagtctcagctttctcttcaacttttaccaacatttcctcatctggtagtataactcttacaaa |
35447382 |
T |
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| Q |
111 |
caatccctggagcgatttcctcgtgtcatttggttgtgttaatgagcaattgcatgcgttcttccttctgttcaggaggtggcagtcgagtcatcgtagg |
210 |
Q |
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| T |
35447381 |
caatccctggagcgatttcctcgtgtaatttggttatgtcaatgagcaattgcatgcgttcttccttctgttcaggaggtggcagtcgagtcatcgtagg |
35447282 |
T |
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| Q |
211 |
aatgattgttcgtgatagggaaaaggttggtgctagcgtttcatgcaatgatgaagctgttctatgttctaacaatgacgctcgccaacatatgagatca |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35447281 |
aatgattgttcgtgatagggaaaaggttggtgctagcgtttcatgcaatgatgaagctgttctatgttctaacaatgacgctcgccaacgtatgagatca |
35447182 |
T |
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| Q |
311 |
cttagctgctatggttttgatgatacttctagacannnnnnngcattagttagaaggtaaaagatgatttgggaaaccgaggttcttagaacttcgttcc |
410 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35447181 |
cttagctgctatggttttgatgatacttctaggcatttttttgcattagttagaaggtaaaagatgatttgggaaaccgaggttcttagaacttcgttcc |
35447082 |
T |
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| Q |
411 |
cacaaaaggtgctattaaatgttcttgccggagaaaagaagtatcagccataggaggtgcaaagcaactttaactctagttga |
493 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35447081 |
cacaaaaggcgctattaaatgttcttgccggagaaaagaagtatcagccataggaggtgcaaagcaactttaactccagttga |
35446999 |
T |
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