View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4890_low_9 (Length: 438)
Name: NF4890_low_9
Description: NF4890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4890_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 30763004 - 30763251
Alignment:
| Q |
13 |
aatattcaagtggaaatctcaagtttcatcaaataaaaagaagtcctcagaatcactgctcgaggttgaagctagagtcaaagaaaaggaagtactcgtc |
112 |
Q |
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| T |
30763004 |
aatattcaagtggaaatctcaagtttcatcaaataaaaagaagtcctcagaatcactgctcgaggttgaagctagagtcaaagaaaaggaagtactcatc |
30763103 |
T |
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| Q |
113 |
agaattcactgtgagaagcnnnnnnncatagtgctcaaaatacatgaattgcttgaaaagttcaatctcactataacaagtagtagcatgttaccatatg |
212 |
Q |
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| T |
30763104 |
agaattcattgtgagaagcaaaaagacatagtgctcaaaatacatgaattgcttgaaaagttcaatatcactataacaagtagtagcatgttaccatttg |
30763203 |
T |
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| Q |
213 |
gtgcttctattcttgtaatcaacatttgtgctaaggtatgaaactgtc |
260 |
Q |
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| T |
30763204 |
gtgattctattcttgtaatcaacatttgtgctcaggtatgaaactgtc |
30763251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 297 - 422
Target Start/End: Original strand, 30763295 - 30763420
Alignment:
| Q |
297 |
ccttcttagtagtctactaattaaaattcactttttaagatgaatagatagggtgtctagggttcgaacatcgacccttgcaaattatccatgtcaactg |
396 |
Q |
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| T |
30763295 |
ccttctcaatagtctactaattaaaattcactttttaagatgaataagtagagtgtctaggattcaaacatcgatccttgcaaattatccatatcaactg |
30763394 |
T |
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| Q |
397 |
aacaatgcttacgaggacataaaatt |
422 |
Q |
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| T |
30763395 |
agcaatgcttacggggacataaaatt |
30763420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 4985855 - 4985811
Alignment:
| Q |
321 |
aattcactttttaagatgaatagatagggtgtctagggttcgaac |
365 |
Q |
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| T |
4985855 |
aattcactttttaagatgaataagtagggtgtccagggttcgaac |
4985811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 5156993 - 5156936
Alignment:
| Q |
321 |
aattcactttttaagatgaatagatagggtgtctagggttcgaacatcgacccttgca |
378 |
Q |
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| T |
5156993 |
aattcaccttataaggtgaataagtagggtgtctagggttcgaaccttgacccttgca |
5156936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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