View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4891-Insertion-1 (Length: 1100)
Name: NF4891-Insertion-1
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4891-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 6e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 63 - 213
Target Start/End: Complemental strand, 32007677 - 32007525
Alignment:
| Q |
63 |
ttcgtaaatcaaaatttacatcaattctttatcatacaacagacaagtgttgctaatacactcaacaagagttgtagtactttgatttgatttgagaaac |
162 |
Q |
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| T |
32007677 |
ttcgtaaatcaaaatttacatcaattctttatcatacaacagacaagtgttgctaatacactcaacaagagttgtagtactttgatttgatttgagaaac |
32007578 |
T |
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| Q |
163 |
acttgttaaatgcaataatattcttttgtagaacacaa--caaattaaatcta |
213 |
Q |
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| T |
32007577 |
acttgttaaatgcaataatattcttttgtagaacacaaagcaaattaaatcta |
32007525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 245 - 345
Target Start/End: Complemental strand, 32007493 - 32007393
Alignment:
| Q |
245 |
caaacaaccctcgttgaagaatggacattattttgttttccaatactccaagattgattgattgtattttaagcaacttggcataatatttcacatttat |
344 |
Q |
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| T |
32007493 |
caaacaaccctccttgaagaatggacattattttgttttccaatactccaagattgattgattgtattttaagcaacttggcataatatttcacatttat |
32007394 |
T |
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| Q |
345 |
t |
345 |
Q |
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| |
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| T |
32007393 |
t |
32007393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 593 - 655
Target Start/End: Complemental strand, 32007336 - 32007274
Alignment:
| Q |
593 |
agccacaaaagaaggttttggctttggctgctgtcagatttagagttcaatttatttggttct |
655 |
Q |
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| T |
32007336 |
agccacaaaagaaggttttggctttggctgctgtcagatttagagttcaatttatttggttct |
32007274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 2e-40; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 42116366 - 42116245
Alignment:
| Q |
8 |
gtttcataatgaaaaaacaatattccatgtattatgatgatgttaccttaatttcttcgtaaatcaaaatttacatcaattctttatcatacaacagaca |
107 |
Q |
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| T |
42116366 |
gtttcataatgttacaacaatattccatgtattatgatcatgttaccttagcttctccgtaaatcaaaatttacatcaattctttatcatacaacataca |
42116267 |
T |
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| Q |
108 |
agtgttgctaatacactcaaca |
129 |
Q |
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| T |
42116266 |
agtgttactaatacactcaaca |
42116245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 387 - 524
Target Start/End: Complemental strand, 42115990 - 42115857
Alignment:
| Q |
387 |
taataaataagaatttagattaaatatgtgatctaattaagtccatgaataaacttggttgttatggggttgttggattcactgttgggagatggacgga |
486 |
Q |
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| T |
42115990 |
taataaataaacatttagattaaatatgtgatctat----gcccatgaataagcttggttgttatgggattgttggattcactgttgggagatggacgaa |
42115895 |
T |
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| Q |
487 |
aatttattaaaagaaaagacagtgatgaaggcgaaaca |
524 |
Q |
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| T |
42115894 |
aatttatcaaaagaaaagacagtgatgcaggagaaaca |
42115857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 252 - 371
Target Start/End: Complemental strand, 42116163 - 42116043
Alignment:
| Q |
252 |
ccctcgttgaagaatggacattattttgttt-tccaatactccaagattgattgattgtattttaagcaacttggcataatatttcacatttatttgaca |
350 |
Q |
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||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |
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| T |
42116163 |
ccctccttgaagaatggacattattttgtttatatgatactccaagattgattgattgtattttaagaaacttggcataataattcacatttatatgacc |
42116064 |
T |
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| Q |
351 |
ctttaaaatttgcaattctgt |
371 |
Q |
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|||| | ||||||||||||| |
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| T |
42116063 |
cttttacctttgcaattctgt |
42116043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 624 - 692
Target Start/End: Complemental strand, 42114209 - 42114131
Alignment:
| Q |
624 |
tgtcagatttagagttcaatttatttggttcta----------tacatggataattccaagtgccataaataaattttt |
692 |
Q |
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| T |
42114209 |
tgtcagatttagagttcaatttatttggtgctatagtagcagttatatggataattccaagtgccataaataaaatttt |
42114131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 44810828 - 44810866
Alignment:
| Q |
689 |
ttttggtggctgaattgattgatgaagagaggtaaagag |
727 |
Q |
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| T |
44810828 |
ttttggtggctgaattcattgatgaagagaggtaaagag |
44810866 |
T |
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