View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4891-Insertion-13 (Length: 473)

Name: NF4891-Insertion-13
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4891-Insertion-13
NF4891-Insertion-13
[»] chr5 (7 HSPs)
chr5 (8-459)||(36845574-36846022)
chr5 (98-339)||(6160139-6160353)
chr5 (8-63)||(6160364-6160419)
chr5 (382-447)||(6160129-6160194)
chr5 (278-315)||(36856197-36856234)
chr5 (263-315)||(36856106-36856158)
chr5 (102-150)||(36856264-36856312)
[»] chr6 (7 HSPs)
chr6 (22-447)||(6681713-6682120)
chr6 (264-408)||(6771256-6771394)
chr6 (272-360)||(6682044-6682131)
chr6 (102-150)||(6670820-6670868)
chr6 (321-396)||(6765037-6765112)
chr6 (265-315)||(6670987-6671037)
chr6 (382-445)||(6771311-6771375)
[»] chr3 (2 HSPs)
chr3 (265-444)||(46524612-46524795)
chr3 (266-315)||(2942437-2942486)
[»] scaffold0299 (3 HSPs)
scaffold0299 (126-396)||(17454-17703)
scaffold0299 (26-88)||(17165-17227)
scaffold0299 (126-324)||(17230-17413)


Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Complemental strand, 36846022 - 36845574
Alignment:
Q  8 gatggaacagtcgctggccaatgaatctttgtgaatatatagagtgcacaacaagtcgttataagcagtcaacatgcagcgatcacttgacaaattttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36846022 gatggaacagtcgctggccaatgaatctttgtgaatatatagagtacacaacaagtcgttataagcagtcaacatgcagcgatcacttgacaaattttat 36845923  T
Q  108 tagctttgatgaagcattttaaatttcattgaagctaagtgtaaacagtttaacataattagtgttgtgattttcatctttccttttgtgtatataaatt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36845922 tagctttgatgaagcattttaaatttcattgaagctaagtgtaaacagtttaacgtaattagtgttgtgattttcatctttccttttgtgtatataaatt 36845823  T
Q  208 tgattattatgtatatacataggttaggggttaggaatagccttattattattcatttctcttaaaataagagattcaattttgtgttgttgtgaatata 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36845822 tgattattatgtatatacataggttaggggttaggaatagccttat---tattcatttctcttaaaataagagattcaattttgtgttgttgtgaatata 36845726  T
Q  308 tattcaatggttgagagcctaagctccaactattcaatttaagtctcatttttgaggggcttgaaattagaaaatcaagtttgtattgtggtaaatgtat 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  36845725 tattcaatggttgagagcctaagctccaactattcaatttaagtctcatttttgagaggcttgaaattagaaaatcaagtttgtattgttgtaaatgtat 36845626  T
Q  408 attaaatggttgagagctaagctccaactattcaattcaattcaattctttc 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36845625 attaaatggttgagagctaagctccaactattcaattcaattcaattctttc 36845574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 98 - 339
Target Start/End: Complemental strand, 6160353 - 6160139
Alignment:
Q  98 caaattttattagctttgatgaagcattttaaatttcattgaagctaagtgtaaacagtttaacataattagtgttgtgattttcatctttccttttgtg 197  Q
    |||||||||||| |||||||||||| | ||||||||| || ||||||||||| |||           || ||||||||| ||||||||||||||||||||    
T  6160353 caaattttattaactttgatgaagc-tattaaatttcgttaaagctaagtgtcaac-----------ataagtgttgtgcttttcatctttccttttgtg 6160266  T
Q  198 tatataaatttgattattatgtatatacataggttaggggttaggaatagccttattattattcatttctcttaaaataagagattcaattttgtgttgt 297  Q
    ||| ||||||||   ||||||||||||||||       ||||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||    
T  6160265 tatgtaaatttg---attatgtatatacata-------ggttaggaatagcc---ttattattca-ttctcttaaaataagagattcaattttgtgttgt 6160180  T
Q  298 tgtgaatatatattcaatggttgagagcctaagctccaacta 339  Q
    ||||||| ||||||||||||||||||| |||||||| |||||    
T  6160179 tgtgaatgtatattcaatggttgagag-ctaagctcaaacta 6160139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 6160419 - 6160364
Alignment:
Q  8 gatggaacagtcgctggccaatgaatctttgtgaatatatagagtgcacaacaagt 63  Q
    |||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  6160419 gatggagcaatcgttggccaatgaatctttgtgaatatatagagtgcacaataagt 6160364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 447
Target Start/End: Complemental strand, 6160194 - 6160129
Alignment:
Q  382 tcaagtttgtattgtggtaaatgtatattaaatggttgagagctaagctccaactattcaattcaa 447  Q
    |||| ||||| |||| || |||||||||| |||||||||||||||||||| |||||  ||||||||    
T  6160194 tcaattttgtgttgttgtgaatgtatattcaatggttgagagctaagctcaaactacacaattcaa 6160129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 36856234 - 36856197
Alignment:
Q  278 gagattcaattttgtgttgttgtgaatatatattcaat 315  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  36856234 gagattcaattttgtattgttgtgaatatacattcaat 36856197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 36856158 - 36856106
Alignment:
Q  263 tttctcttaaaataagagattcaattttgtgttgttgtgaatatatattcaat 315  Q
    |||||||||||| |||| | |||||||||| ||||||| ||| ||||||||||    
T  36856158 tttctcttaaaacaagataatcaattttgtattgttgttaatgtatattcaat 36856106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 36856312 - 36856264
Alignment:
Q  102 ttttattagctttgatgaagcattttaaatttcattgaagctaagtgta 150  Q
    |||||| |||||||||||||| | ||||||||| || ||||||||||||    
T  36856312 ttttatcagctttgatgaagcgtattaaatttcgtttaagctaagtgta 36856264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 7e-90; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 22 - 447
Target Start/End: Original strand, 6681713 - 6682120
Alignment:
Q  22 tggccaatgaatctttgtgaatatatagagtgcacaacaagtcgttataagcagtcaacatgcagcgatcacttgacaaattttattagctttgatgaag 121  Q
    |||||||||||||||||| |||||||||||||||||| || | ||| |||||||| ||| ||| | ||||||||| |||||||||||| |||||||||||    
T  6681713 tggccaatgaatctttgttaatatatagagtgcacaataaatggttttaagcagtgaacgtgccgggatcacttgccaaattttattatctttgatgaag 6681812  T
Q  122 cattttaaatttcattgaagctaagtgtaaacagtttaacataattagtgttgtgattttcatctttccttttgtgtatataaatttgattattatgtat 221  Q
    ||| ||||||||| ||||||| ||| |||||||| |  ||||||   ||||||||||||| ||||||||||||||||||||||||||||||||   |||     
T  6681813 catattaaatttcgttgaagc-aagcgtaaacagctcgacataa---gtgttgtgattttaatctttccttttgtgtatataaatttgattat---gtaa 6681905  T
Q  222 -atacataggttaggggttaggaatagccttattattattcatttctcttaaaataagagattcaattttgtgttgttgtgaatatatattcaatggttg 320  Q
     ||||||||||||||       ||||| |||||||||  |    |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||    
T  6681906 catacataggttagg-------aataggcttattattgat----tctcttaaaataagagattcaattttgtgttgttgtaaaagtatattcaatggttg 6681994  T
Q  321 agagcctaagctccaactattcaatttaagtctcatttttgaggggcttgaaattagaaaatcaagtttgtattgtggtaaatgtatattaaatggttga 420  Q
    |||| | |||||||||| |||||||| |||||||| |||| || | |||||||||||| | |||| |||||||||| || |||||||||| |||| ||||    
T  6681995 agaggcaaagctccaaccattcaattcaagtctca-ttttaagagacttgaaattagagattcaattttgtattgttgtgaatgtatattcaatgattga 6682093  T
Q  421 gagctaagctccaactattcaattcaa 447  Q
    |||||||||||  ||||||||||||||    
T  6682094 gagctaagctctgactattcaattcaa 6682120  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 408
Target Start/End: Complemental strand, 6771394 - 6771256
Alignment:
Q  264 ttctcttaaaataagagattcaattttgtgttgttgtgaatatatattcaatggttgagagcctaagctccaactattcaatttaagtctcatttttgag 363  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||| ||||||||||| ||||||||     ||||| |||| ||    
T  6771394 ttctcttaaaataagagattcaattttgtgttgttttaaaagtatattcaatggttgagaggctaagctccaattattcaat-----tctca-ttttaag 6771301  T
Q  364 gggcttgaaattagaaaatcaagtttgtattgtggtaaatgtata 408  Q
     | ||||||||||||||||||| |||||||| | || ||||||||    
T  6771300 agacttgaaattagaaaatcaattttgtatttttgtgaatgtata 6771256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 272 - 360
Target Start/End: Original strand, 6682044 - 6682131
Alignment:
Q  272 aaataagagattcaattttgtgttgttgtgaatatatattcaatggttgagagcctaagctccaactattcaatttaagtctcattttt 360  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||  ||||||||||| ||||||| |||||    
T  6682044 aaattagagattcaattttgtattgttgtgaatgtatattcaatgattgagagc-taagctctgactattcaattcaagtctctttttt 6682131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 6670820 - 6670868
Alignment:
Q  102 ttttattagctttgatgaagcattttaaatttcattgaagctaagtgta 150  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||||    
T  6670820 ttttatcagctttgatgaagcatattaaatttcgttgaagctaagtgta 6670868  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 6765112 - 6765037
Alignment:
Q  321 agagcctaagctccaactattcaatttaagtctcatttttgaggggctt-gaaattagaaaatcaagtttgtattgt 396  Q
    |||||||||||||||||||||||||| ||||||||||||  || | ||| || ||||||||||||| ||||||||||    
T  6765112 agagcctaagctccaactattcaattcaagtctcatttta-agagacttagatattagaaaatcaattttgtattgt 6765037  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 6670987 - 6671037
Alignment:
Q  265 tctcttaaaataagagattcaattttgtgttgttgtgaatatatattcaat 315  Q
    |||||||||| |||||| |||||||||| ||||||||||| ||||||||||    
T  6670987 tctcttaaaacaagagaatcaattttgtattgttgtgaatgtatattcaat 6671037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 445
Target Start/End: Complemental strand, 6771375 - 6771311
Alignment:
Q  382 tcaagtttgtattgtggtaaatgtatattaaatggttgagag-ctaagctccaactattcaattc 445  Q
    |||| ||||| ||||  |||| ||||||| |||||||||||| ||||||||||| ||||||||||    
T  6771375 tcaattttgtgttgttttaaaagtatattcaatggttgagaggctaagctccaattattcaattc 6771311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 265 - 444
Target Start/End: Original strand, 46524612 - 46524795
Alignment:
Q  265 tctcttaaaataagagattcaattttgtgttgttgtgaatatata--ttcaatggttgagagcctaagctccaactattcaatttaagtct--cattttt 360  Q
    |||||||||| |||||| |||||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||| || ||||| ||||  |||||||    
T  46524612 tctcttaaaacaagagaatcaattttgtattgctgtgaatatatacattcaatggttgagagcctaagctccaactactctatttatgtctcccattttt 46524711  T
Q  361 gaggggcttgaaattagaaaatcaagtttgtattgtggtaaatgtatattaaatggttgagagctaagctccaactattcaatt 444  Q
     || | |||||||||||| | |||| |||||||||| || |||| | ||| |||||| ||||||||||||| |||| |||||||    
T  46524712 aagagacttgaaattagagattcaattttgtattgttgtgaatgcaaattcaatggtggagagctaagctctaactcttcaatt 46524795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 2942486 - 2942437
Alignment:
Q  266 ctcttaaaataagagattcaattttgtgttgttgtgaatatatattcaat 315  Q
    ||||||||| |||||| | |||||||| ||||||||||| ||||||||||    
T  2942486 ctcttaaaacaagagaattaattttgtattgttgtgaatgtatattcaat 2942437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 126 - 396
Target Start/End: Original strand, 17454 - 17703
Alignment:
Q  126 ttaaatttcattgaagc-taagtgtaaacagtttaacataattagtgttgtgattttcatctttccttttgtgtatataaatttgattattatgtatata 224  Q
    ||||||||| ||||||| |||| ||||||||||  ||||||   ||||||| ||||||||| |||||||| |||||||||||||| ||||   |||   |    
T  17454 ttaaatttcgttgaagcctaagcgtaaacagttcgacataa---gtgttgtaattttcatccttccttttctgtatataaatttgtttat---gta---a 17544  T
Q  225 cataggttaggggttaggaatagccttattattattcatttctcttaaaataagagattcaattttgtgttgttgtgaatatatattcaatggttgagag 324  Q
    ||||   ||  |||||||||||| || ||||||   |||  |||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||    
T  17545 cata---tataggttaggaataggctcattatt---cata-ctcttaaaatgagagactcaattttgtgttgttgtgaatatttattcaatggtagagag 17637  T
Q  325 cctaagctccaactattcaatttaagtctcatttttgaggggcttgaaattagaaaatcaagtttgtattgt 396  Q
     | |||||||||||||| |||     ||||| |||| || | ||||||||||||||||||| ||||||||||    
T  17638 tcaaagctccaactattaaat-----tctca-ttttaagagacttgaaattagaaaatcaattttgtattgt 17703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 17165 - 17227
Alignment:
Q  26 caatgaatctttgtgaatatatagagtgcacaacaagtcgttataagcagtcaacatgcagcg 88  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||    
T  17165 caatgaatctttgtgaatatatagagtgcacaataagtggttataaacagtcaacatgcagcg 17227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 324
Target Start/End: Original strand, 17230 - 17413
Alignment:
Q  126 ttaaatttcattgaagc-taagtgtaaacagtttaacataattagtgttgtgattttcatctttccttttgtgtatataaatttgattattatgtatata 224  Q
    ||||||||| ||||||| |||| ||||||||||  ||||||   ||||||| ||||||||| |||||||| |||||||||||||| ||||   |||   |    
T  17230 ttaaatttcgttgaagcataagcgtaaacagttcgacataa---gtgttgtaattttcatccttccttttctgtatataaatttgtttat---gta---a 17320  T
Q  225 cataggttaggggttaggaatagccttattattattcatttctcttaaaataagagattcaattttgtgttgttgtgaatatatattcaatggttgagag 324  Q
    ||||   ||  |||||||||||| || ||||||   |||  |||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||    
T  17321 cata---tataggttaggaataggctcattatt---cata-ctcttaaaatgagagactcaattttgtgttgttgtgaatatttattcaatggtagagag 17413  T

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