View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4891-Insertion-14 (Length: 452)
Name: NF4891-Insertion-14
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4891-Insertion-14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 452
Target Start/End: Original strand, 35684623 - 35685068
Alignment:
| Q |
7 |
aaaaatctactatgttccatggagaccattctttaatcagaacacatttccaactttgcatggaacactcccaattataagacctattctcactcgagaa |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35684623 |
aaaagtctactatgttccatggagaccattctttaatcagaacacatttccaactttgcatggaacactcccaattataagaactattctcactcgagaa |
35684722 |
T |
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| Q |
107 |
agaattaccgttgcgcatggacatcaaaccttttcaacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatc |
206 |
Q |
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| T |
35684723 |
agaattaccgttgtgcatggacatcaaaccttttcaacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatc |
35684822 |
T |
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| Q |
207 |
attccttgaatggttttagtgatgctggaagtatacacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatac |
306 |
Q |
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| T |
35684823 |
attccttgaatggttttagtgatgctggaagtatacacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatac |
35684922 |
T |
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| Q |
307 |
aagtaaggagaacacggttttgagatcgggtttggcgccggagaaggtttttgtaatacctaatgctgttgacactgccaagtttaagccaatgtcggag |
406 |
Q |
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| T |
35684923 |
aagtaaggagaacacggttttgaggtcgggtttggcgccggagaaggtttttgtaatacctaatgctgttgacactgccaagtttaagccaatgtcggag |
35685022 |
T |
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| Q |
407 |
gaggagcgccgtagttctaaacctagtagatccgaaattgttattg |
452 |
Q |
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| T |
35685023 |
gaggagcgccgtagttctaaacctagtagatccgaaattgttattg |
35685068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 378
Target Start/End: Complemental strand, 40672512 - 40672148
Alignment:
| Q |
14 |
tactatgttccatggagaccattctttaatcagaacacatttccaactttgcatggaacactcccaattataagacctattctcactcgagaaagaatta |
113 |
Q |
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| T |
40672512 |
tactatgttccatggagaccatttgttatgcagaatacgtttccaaccatctatgggttattaccaattataagaacgattcttattcgagaaagaatta |
40672413 |
T |
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| Q |
114 |
ccgttgcgcatggacatcaaaccttttcaacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattcctt |
213 |
Q |
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| T |
40672412 |
cagtggtgcatggacaccaagccttttcgacattttgtcatgaaactctcatgcatgcaagaaccatgggatacaaggttgtgtttacagatcattctct |
40672313 |
T |
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| Q |
214 |
gaatggttttagtgatgctggaagtatacacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaag |
313 |
Q |
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| T |
40672312 |
gtacggttttgctgatgctggaagcattcacatgaacaaggtgttgcagtttaccttggcagatgtgactcaagccatatgtgtttctcacacaagcaag |
40672213 |
T |
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| Q |
314 |
gagaacacggttttgagatcgggtttggcgccggagaaggtttttgtaatacctaatgctgttga |
378 |
Q |
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| T |
40672212 |
gaaaacacagtgttacggtcaggtttgccaccagataaagtttttgtaatacctaatgccgttga |
40672148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 20685468 - 20685601
Alignment:
| Q |
18 |
atgttccatggagaccattctttaatcagaacacatttccaactttgcatggaacactcccaattataagacctattctcactcgagaaagaattaccgt |
117 |
Q |
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| T |
20685468 |
atgttccacggagaccattctttaatatgaatacatttccaactttatatggaacactcccaattataagaactattttcactcgagaaagaattaccgt |
20685567 |
T |
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| Q |
118 |
tgcgcatggacatcaaaccttttcaacactttgt |
151 |
Q |
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| T |
20685568 |
tgtgcatggacatcaaaccttttcaacactttgt |
20685601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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