View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4891-Insertion-16 (Length: 430)
Name: NF4891-Insertion-16
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4891-Insertion-16 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 8 - 430
Target Start/End: Complemental strand, 45129919 - 45129497
Alignment:
| Q |
8 |
caatccgcaaccataattttcccttattttaccatgtataaatgtttgcagcataaacacaaccagcgttttaactatgaacgtctatccggatttcaca |
107 |
Q |
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| T |
45129919 |
caatccgcaaccataattttcccttattttaccatgtataaatgtttgcagcataaacacaaccagcgttttaactatgaacgtctatccggatttcaca |
45129820 |
T |
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| Q |
108 |
gatatgactatgagccatgcactcaacacaacatgattcataagatagaactataaaacaatagactcaaacccttcatatacacagtatatatacgagt |
207 |
Q |
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| T |
45129819 |
gatatgactatgagccatgcactcaacacaacatgattcataagatagaactataaaacaatagactcaaacccttcatatacacagtatatatacgagt |
45129720 |
T |
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| Q |
208 |
actgccaaatttaccttagaaactgagcataatgtggtccatagggtccttcaactgagacattaagatgatccaaagatgaagaagaaagttcttgata |
307 |
Q |
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| T |
45129719 |
actgccaaatttaccttagaaactgagcagaatgtggtccatagggtccttcaactgagacattaagatgatccaaagatgaagaagaaagttcttgata |
45129620 |
T |
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| Q |
308 |
aagcttgtttgaccagctgcccacatttttaattgtaacactaaggcagttcgtctccaaattacaactagaagacaccgtaaaagggtgccattgcagc |
407 |
Q |
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| T |
45129619 |
aagcttgtttgaccagctgcccacatttttaattgtaacactaaggcagttcgtctccaaattacaactagaagacaccgtaaaagggtgccattgcagc |
45129520 |
T |
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| Q |
408 |
ttggaaacctttggaacatttat |
430 |
Q |
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| T |
45129519 |
ttggaaacctttggaacatttat |
45129497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 220 - 430
Target Start/End: Complemental strand, 45112492 - 45112282
Alignment:
| Q |
220 |
accttagaaactgagcataatgtggtccatagggtccttcaactgagacattaagatgatccaaagatgaagaagaaagttcttgataaagcttgtttga |
319 |
Q |
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| T |
45112492 |
accttagaaattgtgcagtatggggtccgtaaggtccttcaactgaaatattaagatgatccaaagatgaagaagaaagttcctgatacagcttgtttga |
45112393 |
T |
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| Q |
320 |
ccagctgcccacatttttaattgtaacactaaggcagttcgtctccaaattacaactagaagacaccgtaaaagggtgccattgcagcttggaaaccttt |
419 |
Q |
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| T |
45112392 |
ccagctacccacattttttatggcaacactcagatagttagtctccatattacaactagaagtcactgtaaaagggtgccattgcagcttggaaaccttt |
45112293 |
T |
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| Q |
420 |
ggaacatttat |
430 |
Q |
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| T |
45112292 |
ggaacatttat |
45112282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 45113003 - 45112921
Alignment:
| Q |
11 |
tccgcaaccataattttcccttattttaccat-gtataaatgtttgcagcataaacacaaccagcgttttaactatgaacgtc |
92 |
Q |
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| T |
45113003 |
tccgcaaccataatttatccttattttaccacagtataaacgtttgcagcataaacagaaccagcggtttaactatgaacgtc |
45112921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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