View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4891-Insertion-17 (Length: 184)
Name: NF4891-Insertion-17
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4891-Insertion-17 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 5445889 - 5445713
Alignment:
| Q |
8 |
aaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggcct |
107 |
Q |
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| T |
5445889 |
aaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggcct |
5445790 |
T |
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| Q |
108 |
taacctggaacattccttcatcaatggtcactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcaca |
184 |
Q |
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| T |
5445789 |
taacctggaacattccttcatcaatggtcactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcaca |
5445713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 5433393 - 5433497
Alignment:
| Q |
8 |
aaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggcct |
107 |
Q |
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| T |
5433393 |
aaatctttcttgtactttctatgaaacaattcaacaagacggttcaccaaattgttatcaaagtcaacaccacttaaatgagtatctctcaatgaggctt |
5433492 |
T |
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| Q |
108 |
taacc |
112 |
Q |
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| T |
5433493 |
taacc |
5433497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 5440785 - 5440959
Alignment:
| Q |
8 |
aaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaa--atga--gtatctcccaatgtg |
103 |
Q |
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| T |
5440785 |
aaatccttcttgtactttctataaaataattcaacaagaaggttcaccaaattgttatcaaactcaacatcacccaaacattaacgtatgtctcaatgtt |
5440884 |
T |
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| Q |
104 |
gccttaacctggaacattccttcatcaatggt-cactaaggaaacatcgaatgttccaccaccaagatcaaacac |
177 |
Q |
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| T |
5440885 |
gctttaactttgaatattccttcgtcaatgatggactaaggaaacatcaaaagttccaccaccaaggtcgaacac |
5440959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 5432486 - 5432565
Alignment:
| Q |
14 |
ttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatc |
93 |
Q |
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| T |
5432486 |
ttcttgtacattctctttaacaattcaacaagacagttcaccaaattgttatcaaaattgaaagcacccaaatgagtatc |
5432565 |
T |
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