View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4891-Insertion-2 (Length: 1050)

Name: NF4891-Insertion-2
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4891-Insertion-2
NF4891-Insertion-2
[»] chr5 (12 HSPs)
chr5 (8-350)||(36881833-36882170)
chr5 (624-878)||(36882695-36882952)
chr5 (10-116)||(36892919-36893025)
chr5 (419-498)||(36882476-36882558)
chr5 (8-113)||(36902035-36902143)
chr5 (296-349)||(12521543-12521596)
chr5 (296-349)||(2880549-2880602)
chr5 (541-602)||(36882622-36882683)
chr5 (303-351)||(29588892-29588940)
chr5 (298-332)||(28413288-28413322)
chr5 (298-331)||(11615534-11615567)
chr5 (298-331)||(36638780-36638813)
[»] scaffold0519 (1 HSPs)
scaffold0519 (633-706)||(7450-7521)
[»] chr8 (3 HSPs)
chr8 (633-706)||(11229298-11229369)
chr8 (296-349)||(28769341-28769394)
chr8 (312-349)||(42370379-42370416)
[»] chr4 (7 HSPs)
chr4 (296-330)||(22662249-22662283)
chr4 (303-348)||(45927365-45927410)
chr4 (296-330)||(22666728-22666762)
chr4 (301-331)||(41603418-41603448)
chr4 (298-331)||(6466050-6466083)
chr4 (302-351)||(37575944-37575993)
chr4 (301-330)||(43886138-43886167)
[»] chr3 (3 HSPs)
chr3 (61-107)||(23278833-23278879)
chr3 (298-332)||(38318992-38319026)
chr3 (312-349)||(13371132-13371169)
[»] chr7 (2 HSPs)
chr7 (306-349)||(39505971-39506014)
chr7 (297-331)||(2825234-2825268)
[»] chr1 (9 HSPs)
chr1 (298-349)||(35925705-35925756)
chr1 (298-349)||(37593688-37593739)
chr1 (296-339)||(52286703-52286746)
chr1 (303-349)||(3597290-3597336)
chr1 (303-349)||(11893602-11893648)
chr1 (299-337)||(27820201-27820239)
chr1 (299-349)||(27820342-27820392)
chr1 (299-349)||(51695500-51695550)
chr1 (296-349)||(14629968-14630021)
[»] scaffold0089 (1 HSPs)
scaffold0089 (312-349)||(33645-33682)
[»] chr6 (2 HSPs)
chr6 (298-331)||(4420676-4420709)
chr6 (312-349)||(20512662-20512699)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 36881833 - 36882170
Alignment:
Q  8 aatattgcatttggcagcaaaggcactaggtgatggtaaaccttggcagattgctggttctgccttacaaatgatgtgggatataaaatggtttcaggta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36881833 aatattgcatttggcagcaaaggcactaggtgatggtaaaccttggcagattgctggttctgccttacaaatgatgtgggatataaaatggtttcaggta 36881932  T
Q  108 catacaattattacaaccatattcataatcatttttaaaatattgcttacttattttgaagttagtttcttaactttaatttttcttaaacctcatggac 207  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |    
T  36881933 catacaattattacaaccatattcacaatcatttttaaaatattgcttacttattttgaagttagtttcttaactttaatttttcttaaacctcttgcgc 36882032  T
Q  208 atgttggattgatttattttaggtctatctattaacataacatttgtgatgctcttcacaagaacctatgaaaacaacatacaacaacatatgttcataa 307  Q
    |||||||||||| ||||||||||| |||||||| |||||||||||||||  ||||| |||||||||||||||||||||||| |||     ||||||||||    
T  36882033 atgttggattgacttattttaggtttatctattgacataacatttgtgagactctttacaagaacctatgaaaacaacatataac-----atgttcataa 36882127  T
Q  308 gctattttcagcttatttccataaaatcttcataatagcttac 350  Q
     ||||||||| ||||||||||||||||||||||||||||||||    
T  36882128 cctattttcatcttatttccataaaatcttcataatagcttac 36882170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 624 - 878
Target Start/End: Original strand, 36882695 - 36882952
Alignment:
Q  624 ggaaggatgaagtagaagaaatcgaggacttttggaggggggagcttcggggaatttatttttctttatgatacaaaatcttcttagtttgggagaactc 723  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||     
T  36882695 ggaaggatgaagtagaagaaatcgaggactttgggaggggggagctttggggaatttatttttctttataatacaaaatcttcttaatttgggagaactt 36882794  T
Q  724 aaaagttg-attgaacaaagatttgagagggtttgcagggcttgga-taaattcaaacattaaaaatttaaaatgcctatttactccatta-ttttcagg 820  Q
    |||||||| | |||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||||||||| || | | |    
T  36882795 aaaagttgtactgaacaaagatttgagagggtttgcagggcttggacaaaattcaaagattaaaaatttaaaatgtctatttactccattacttgtaaag 36882894  T
Q  821 tgaagaatatgcatgtagttgattttagaaacttccatgaagcaaaagttttactaaa 878  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  36882895 tgaagaatatgcatgtagatgatttgagaaacttccatgaagcaaaagttttactaaa 36882952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 36892919 - 36893025
Alignment:
Q  10 tattgcatttggcagcaaaggcactaggtgatggtaaaccttggcagattgctggttctgccttacaaatgatgtgggatataaaatggtttcaggtaca 109  Q
    ||||||||||||||||  ||||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36892919 tattgcatttggcagccgaggcattaggtggtgataaaccttggcagattgctggttctgccttgcaaatgatgtgggatataaaatggtttcaggtaca 36893018  T
Q  110 tacaatt 116  Q
    || ||||    
T  36893019 taaaatt 36893025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 419 - 498
Target Start/End: Original strand, 36882476 - 36882558
Alignment:
Q  419 tattaaattgcttatcaaagtaaaccataagcttacaagcatt---tttgggagtaaatgacattttagtcattgaaatagta 498  Q
    |||||||||| ||||||||| |||||| |||||||||| ||||   |||||||||||||||||||||||||||||||||||||    
T  36882476 tattaaattggttatcaaagcaaaccacaagcttacaaacattatttttgggagtaaatgacattttagtcattgaaatagta 36882558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 36902035 - 36902143
Alignment:
Q  8 aatattgcatttggcagcaaaggcactaggtgatggtaaaccttggcaga---ttgctggttctgccttacaaatgatgtgggatataaaatggtttcag 104  Q
    ||||||||||||||||||| |||||| || || || ||||||| | ||||   ||||| | ||||| |||||||||||||||||||| ||||||||||||    
T  36902035 aatattgcatttggcagcagaggcacaagctgttgataaacctggacagaatattgctaggtctgcattacaaatgatgtgggatatgaaatggtttcag 36902134  T
Q  105 gtacataca 113  Q
    |||||||||    
T  36902135 gtacataca 36902143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 12521596 - 12521543
Alignment:
Q  296 atatgttcataagctattttcagcttatttccataaaatcttcataatagctta 349  Q
    ||||||||||||||| ||||||||||||||||||||  |||||| |||||||||    
T  12521596 atatgttcataagctgttttcagcttatttccataagctcttcaaaatagctta 12521543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 2880549 - 2880602
Alignment:
Q  296 atatgttcataagctattttcagcttatttccataaaatcttcataatagctta 349  Q
    ||||||||||||| | ||||||||||||||||||||| |||||  |||||||||    
T  2880549 atatgttcataaggtgttttcagcttatttccataaactcttctgaatagctta 2880602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 541 - 602
Target Start/End: Original strand, 36882622 - 36882683
Alignment:
Q  541 caatttagttatttcatcaaaacaattatttggggtatgtttggaagtttacgagaggaggg 602  Q
    |||||| ||| |||||| |||| | ||||||||||||||||||| |||||| ||||||||||    
T  36882622 caatttggttctttcataaaaatatttatttggggtatgtttgggagtttatgagaggaggg 36882683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 29588940 - 29588892
Alignment:
Q  303 cataagctattttcagcttatttccataaaatcttcataatagcttacg 351  Q
    |||| ||||||||||||||||||||||||| ||||||  ||||||||||    
T  29588940 cataggctattttcagcttatttccataaactcttcaacatagcttacg 29588892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 28413288 - 28413322
Alignment:
Q  298 atgttcataagctattttcagcttatttccataaa 332  Q
    ||||||||||||| |||||||||||||||||||||    
T  28413288 atgttcataagctgttttcagcttatttccataaa 28413322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 11615567 - 11615534
Alignment:
Q  298 atgttcataagctattttcagcttatttccataa 331  Q
    ||||||||||||| ||||||||||||||||||||    
T  11615567 atgttcataagctgttttcagcttatttccataa 11615534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 36638813 - 36638780
Alignment:
Q  298 atgttcataagctattttcagcttatttccataa 331  Q
    ||||||||||||| ||||||||||||||||||||    
T  36638813 atgttcataagcttttttcagcttatttccataa 36638780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 706
Target Start/End: Original strand, 7450 - 7521
Alignment:
Q  633 aagtagaagaaatcgaggacttttggaggggggagcttcggggaatttatttttctttatgatacaaaatcttc 706  Q
    |||||||| |||| |||||| ||  ||||||  |||||||||||||||||||||||| || |||||||||||||    
T  7450 aagtagaataaatagaggacatt--gaggggaaagcttcggggaatttatttttcttcataatacaaaatcttc 7521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 706
Target Start/End: Complemental strand, 11229369 - 11229298
Alignment:
Q  633 aagtagaagaaatcgaggacttttggaggggggagcttcggggaatttatttttctttatgatacaaaatcttc 706  Q
    |||||||| |||| |||||| ||  ||||||  |||||||||||||||||||||||| || |||||||||||||    
T  11229369 aagtagaataaatagaggacatt--gaggggaaagcttcggggaatttatttttcttcataatacaaaatcttc 11229298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 28769341 - 28769394
Alignment:
Q  296 atatgttcataagctattttcagcttatttccataaaatcttcataatagctta 349  Q
    |||||| |||||| | ||||||||||||||||||||| ||| || |||||||||    
T  28769341 atatgtccataagttgttttcagcttatttccataaactctccaaaatagctta 28769394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 42370379 - 42370416
Alignment:
Q  312 ttttcagcttatttccataaaatcttcataatagctta 349  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  42370379 ttttcagcttatttccataaactcttcatgatagctta 42370416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 22662249 - 22662283
Alignment:
Q  296 atatgttcataagctattttcagcttatttccata 330  Q
    |||||||||||||||||||||||||||||||||||    
T  22662249 atatgttcataagctattttcagcttatttccata 22662283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 45927410 - 45927365
Alignment:
Q  303 cataagctattttcagcttatttccataaaatcttcataatagctt 348  Q
    |||||||| ||||||||||||||||||||| ||| |||||||||||    
T  45927410 cataagctgttttcagcttatttccataaactctccataatagctt 45927365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 22666728 - 22666762
Alignment:
Q  296 atatgttcataagctattttcagcttatttccata 330  Q
    ||||||||||||||||||||||| |||||||||||    
T  22666728 atatgttcataagctattttcagtttatttccata 22666762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 331
Target Start/End: Original strand, 41603418 - 41603448
Alignment:
Q  301 ttcataagctattttcagcttatttccataa 331  Q
    |||||||||||||||||||||||||||||||    
T  41603418 ttcataagctattttcagcttatttccataa 41603448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 6466050 - 6466083
Alignment:
Q  298 atgttcataagctattttcagcttatttccataa 331  Q
    |||||||||||||||||||| |||||||||||||    
T  6466050 atgttcataagctattttcaacttatttccataa 6466083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 37575944 - 37575993
Alignment:
Q  302 tcataagctattttcagcttatttccataaaatcttcataatagcttacg 351  Q
    ||||||| | ||||||||| ||||||||||| ||||||||||| ||||||    
T  37575944 tcataagttgttttcagctcatttccataaactcttcataatatcttacg 37575993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 43886138 - 43886167
Alignment:
Q  301 ttcataagctattttcagcttatttccata 330  Q
    ||||||||||||||||||||||||||||||    
T  43886138 ttcataagctattttcagcttatttccata 43886167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 23278833 - 23278879
Alignment:
Q  61 ctggttctgccttacaaatgatgtgggatataaaatggtttcaggta 107  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||||    
T  23278833 ctggtgctgccttgcaaatgatgtggcatataaaatggtttcaggta 23278879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 38319026 - 38318992
Alignment:
Q  298 atgttcataagctattttcagcttatttccataaa 332  Q
    |||||||||||||||||||||||||||||||||||    
T  38319026 atgttcataagctattttcagcttatttccataaa 38318992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 13371169 - 13371132
Alignment:
Q  312 ttttcagcttatttccataaaatcttcataatagctta 349  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  13371169 ttttcagcttatttccataagctcttcataatagctta 13371132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 349
Target Start/End: Complemental strand, 39506014 - 39505971
Alignment:
Q  306 aagctattttcagcttatttccataaaatcttcataatagctta 349  Q
    ||||||||||||||||||||||||||| ||| || |||||||||    
T  39506014 aagctattttcagcttatttccataaactctccagaatagctta 39505971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 2825234 - 2825268
Alignment:
Q  297 tatgttcataagctattttcagcttatttccataa 331  Q
    |||||||||||| ||||||||||||||||||||||    
T  2825234 tatgttcataagttattttcagcttatttccataa 2825268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 349
Target Start/End: Complemental strand, 35925756 - 35925705
Alignment:
Q  298 atgttcataagctattttcagcttatttccataaaatcttcataatagctta 349  Q
    ||||||||||||| |||||| |||||||||||||| ||| ||| ||||||||    
T  35925756 atgttcataagctgttttcaacttatttccataaactctccatgatagctta 35925705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 37593688 - 37593739
Alignment:
Q  298 atgttcataagctattttcagcttatttccataaaatcttcataatagctta 349  Q
    ||||||||||||| |||||||||||||| |||||  |||||| |||||||||    
T  37593688 atgttcataagctgttttcagcttattttcataagctcttcaaaatagctta 37593739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 52286746 - 52286703
Alignment:
Q  296 atatgttcataagctattttcagcttatttccataaaatcttca 339  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  52286746 atatgtccataagctatttttagcttatttccataaactcttca 52286703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 3597290 - 3597336
Alignment:
Q  303 cataagctattttcagcttatttccataaaatcttcataatagctta 349  Q
    |||||||||||||||||||||||||||||| | ||| | ||||||||    
T  3597290 cataagctattttcagcttatttccataaactgttcgtgatagctta 3597336  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 11893602 - 11893648
Alignment:
Q  303 cataagctattttcagcttatttccataaaatcttcataatagctta 349  Q
    |||||| | ||||||||||||||||||||| |||||| |||||||||    
T  11893602 cataagttgttttcagcttatttccataaactcttcaaaatagctta 11893648  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 27820201 - 27820239
Alignment:
Q  299 tgttcataagctattttcagcttatttccataaaatctt 337  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  27820201 tgttcataagctattttcagcttattttcataaattctt 27820239  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 27820342 - 27820392
Alignment:
Q  299 tgttcataagctattttcagcttatttccataaaatcttcataatagctta 349  Q
    ||||||||||||||||||||||||||| |||||| ||| ||  ||||||||    
T  27820342 tgttcataagctattttcagcttattttcataaattctccaagatagctta 27820392  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 51695500 - 51695550
Alignment:
Q  299 tgttcataagctattttcagcttatttccataaaatcttcataatagctta 349  Q
    ||||||||||||||||||||||||||| |||||| ||| ||  ||||||||    
T  51695500 tgttcataagctattttcagcttattttcataaattctccaagatagctta 51695550  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 14629968 - 14630021
Alignment:
Q  296 atatgttcataagctattttcagcttatttccataaaatcttcataatagctta 349  Q
    ||||||||||||| | ||||||||||||||||||||| ||| ||  ||||||||    
T  14629968 atatgttcataagttgttttcagcttatttccataaagtctccaagatagctta 14630021  T

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Target: scaffold0089 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 33645 - 33682
Alignment:
Q  312 ttttcagcttatttccataaaatcttcataatagctta 349  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  33645 ttttcagcttatttccataagctcttcataatagctta 33682  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 4420709 - 4420676
Alignment:
Q  298 atgttcataagctattttcagcttatttccataa 331  Q
    ||||||||||||| ||||||||||||||||||||    
T  4420709 atgttcataagctgttttcagcttatttccataa 4420676  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 20512662 - 20512699
Alignment:
Q  312 ttttcagcttatttccataaaatcttcataatagctta 349  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  20512662 ttttcagcttatttccataagctcttcataatagctta 20512699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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